mRNA_P-littoralis_Contig158.34.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.34.1
Unique NamemRNA_P-littoralis_Contig158.34.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig158.34.1 vs. uniprot
Match: D7G449_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G449_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 2.450e-72
Identity = 117/127 (92.13%), Postives = 121/127 (95.28%), Query Frame = 1
Query:   22 MPSTLGKLYDAAASGSVERTVAVLSQGSVDIDGGYGDGGRTPLMVASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALIKAGADTEALGVDGTPLHVAAAKGFHEGMVVLIHAG 402
            MPSTL KLYDAAASGSVERTVAVLSQGSV+IDGGYGD GRTPLM ASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKAL+KAGA  EA GVDGTPLHVAAAKGFH+GMV+LIHAG
Sbjct:    1 MPSTLSKLYDAAASGSVERTVAVLSQGSVNIDGGYGDVGRTPLMAASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHAG 127          
BLAST of mRNA_P-littoralis_Contig158.34.1 vs. uniprot
Match: D7G2C8_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C8_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 1.140e-68
Identity = 113/125 (90.40%), Postives = 117/125 (93.60%), Query Frame = 1
Query:   22 MPSTLGKLYDAAASGSVERTVAVLSQGSVDIDGGYGDGGRTPLMVASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALIKAGADTEALGVDGTPLHVAAAKGFHEGMVVLIH 396
            MPSTL KLYDAAASGSVERTVAVLSQGSVDIDGGYGD GRTPLM ASTMGYLRVVRVLLR GARVSVADNDGATALHLSIV KHLAVS+AL+KAGA  EA GVDGTPLHVAAAKGFH+GMV+LIH
Sbjct:    1 MPSTLSKLYDAAASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAASTMGYLRVVRVLLRPGARVSVADNDGATALHLSIVIKHLAVSRALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIH 125          
BLAST of mRNA_P-littoralis_Contig158.34.1 vs. uniprot
Match: A0A6H5JL58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 218 bits (556), Expect = 3.830e-64
Identity = 115/128 (89.84%), Postives = 119/128 (92.97%), Query Frame = 1
Query:   22 MPSTLGKLYDAAASGSVERTVAVLSQGSVDIDGGYGDGGRTPLMVASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALIKAGADTEALGVDGTPLHVAAAKGFHEGMVVLIHAGS 405
            MPSTL KLY A ASGSVERTVAVLSQGSVDIDGGYGD GRTPLM A TMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKAL+KAGA  EA GVDGTPLHVAAAKGFH+GMV+LIHAG+
Sbjct:    1 MPSTLSKLYHAPASGSVERTVAVLSQGSVDIDGGYGDVGRTPLMAAFTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALVKAGAGVEARGVDGTPLHVAAAKGFHKGMVMLIHAGA 128          
BLAST of mRNA_P-littoralis_Contig158.34.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 4.630e-41
Identity = 87/116 (75.00%), Postives = 93/116 (80.17%), Query Frame = 1
Query:   58 ASGSVERTVAVLSQGSVDIDGGYGDGGRTPLMVASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALIKAGADTEALGVDGTPLHVAAAKGFHEGMVVLIHAGS 405
            A GSVERTVA+LS+GSVDIDG YGD GRTPLMVASTMGYLRV RVLLRLGA VSVADNDGATALHLS+ N+HLAVSKALIKAGA+ EA  VDG              MVVLIHAG+
Sbjct:    5 ARGSVERTVALLSRGSVDIDGSYGDAGRTPLMVASTMGYLRVERVLLRLGAGVSVADNDGATALHLSVFNQHLAVSKALIKAGAEVEARCVDG--------------MVVLIHAGA 106          
BLAST of mRNA_P-littoralis_Contig158.34.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 2.000e-36
Identity = 76/90 (84.44%), Postives = 79/90 (87.78%), Query Frame = 1
Query:  154 VASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALIKAGADTEA-------LGVDGTPLHVAAAKGFHEGMVVLIHAG 402
            VASTMGYLRVVRVLLRLGARVS ADNDGATALHLSIVNKHLAVSKAL+KAGAD EA       LGV  TPLHVAAAKGFH+GMV+LIHAG
Sbjct:   37 VASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIVNKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMVMLIHAG 126          
BLAST of mRNA_P-littoralis_Contig158.34.1 vs. uniprot
Match: D8LH66_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.980e-30
Identity = 74/125 (59.20%), Postives = 86/125 (68.80%), Query Frame = 1
Query:   22 MPSTLGKLYDAAASGSVERTVAVLSQGSVDIDGGYGDGGRTPLMVASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALIKAGADTEAL-GVDGTPLHVAAAKGFHEGMVVLI 393
            MPSTL K     ASGS++ T+A        ID G GD  +TPLMVAS +G  RVVR LLR GA VSVAD+DG TALH S+ + HLAVSK LI+AGAD EA  G   TPLHVAA KGF +GM +L+
Sbjct:    1 MPSTLSK-----ASGSIDPTIATTG-----IDRGCGDTNQTPLMVASVIGSSRVVRDLLRQGASVSVADSDGCTALHHSVYHNHLAVSKDLIEAGADLEARHGGKDTPLHVAATKGFCQGMKLLM 115          
BLAST of mRNA_P-littoralis_Contig158.34.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 3.520e-30
Identity = 77/139 (55.40%), Postives = 96/139 (69.06%), Query Frame = 1
Query:   22 MPSTLGK-LYDAAASGSVERTVAVLSQGSVDIDGGYGDGGRTPLMVASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALIKAGADTEALG---------VDG-TPLHVAAAKGFHEGMVVLIHAGS 405
            +PST    LY AA+SGSVERT+ +LS G  +ID    + G T LM A+  GYLR+VRVLLR GA VSV+ +DG TALH +I  ++LAV+KALIKAGA+ EA           V G TPLH+AA +GF EGMV LI+AG+
Sbjct:   13 VPSTTSDTLYCAASSGSVERTLDLLSGGFTEIDRRCDEHGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGRNLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGA 151          
BLAST of mRNA_P-littoralis_Contig158.34.1 vs. uniprot
Match: D8LNF8_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF8_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.410e-15
Identity = 61/127 (48.03%), Postives = 78/127 (61.42%), Query Frame = 1
Query:   13 VPTMPSTLGK---LYDAAASGSVERTVAVL-SQGSVDIDGGYGDGGRTPLMVASTMGYLRVVRVLLRLGARVSVADNDGATALHLSIVNK-HLAVSKALIKAGADTEALGVDG-TPLHVAAAKGFHE 375
            VP  P   G    L+ AA  GS+ER VA+L S+ S+DI+ G  + G TPLM+A+  G  RVVR+L   GA VSV  +D  TALH S  +  H  V+K L+KAGAD EA+  +G TPLH+ A  G  E
Sbjct:    6 VPAQPWPRGPQNDLHRAANDGSIERVVALLASRPSIDINQGA-EYGWTPLMLAAWRGSSRVVRILPNKGANVSVVADDFHTALHFSTQDGGHPVVTKMLLKAGADFEAVTSEGETPLHLVADSGCWE 131          
BLAST of mRNA_P-littoralis_Contig158.34.1 vs. uniprot
Match: D8LP44_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.620e-15
Identity = 61/140 (43.57%), Postives = 75/140 (53.57%), Query Frame = 1
Query:   22 MPSTLGKLYDAAASGSVERTVAVLSQGSVDIDGGYGDGGRTPLMVASTMGYLRVVRVLLRLGARVSVADNDG--------ATALHLSIVNKHLAVSKALIKAG---ADTEALGVDG-TPLHVAAAKGFHEGMVVLIHAGS 405
            MPST   LY+AA +GSVERT+ +LS G  +ID    + G T LM A+  GYLR+VRVLLR GA VSV+ +DG                            KA     D E   V G TPLH+A  +GF +GMV LI AG+
Sbjct:    1 MPSTTSTLYNAAWTGSVERTLDLLSDGFTEIDRRCEENGVTALMCAANKGYLRIVRVLLRFGADVSVSTDDGHXXXXXXXXXXXXXXXXXXXXXXXXXXXKADFLHPDQEV--VQGQTPLHLATGEGFCDGMVALIDAGA 138          
BLAST of mRNA_P-littoralis_Contig158.34.1 vs. uniprot
Match: D7FVK3_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVK3_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.350e-10
Identity = 39/75 (52.00%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   34 LGKLYDAAASGSVERTVAVLSQGSVDIDGGYGDGGRTPLMVASTMGYLRVVRVLLRLGARVSVADNDGATALHLS 258
            + KL++AA  GS   T A+LS GS+DIDGG   GG TPLM A    +  VV +LL  GA VS  +++G TALHLS
Sbjct:   15 INKLHEAARDGSTWLTAAILSTGSIDIDGGDSSGG-TPLMHAICNDHPSVVSILLSKGASVSAINDEGNTALHLS 88          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.34.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G449_ECTSI2.450e-7292.13EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G2C8_ECTSI1.140e-6890.40EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JL58_9PHAE3.830e-6489.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1W5_9PHAE4.630e-4175.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNS0_9PHAE2.000e-3684.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LH66_ECTSI1.980e-3059.20EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5KSL5_9PHAE3.520e-3055.40Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
D8LNF8_ECTSI1.410e-1548.03EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LP44_ECTSI1.620e-1543.57EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7FVK3_ECTSI1.350e-1052.00EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:101081..101485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G449
PFAMsAnk_2,Ank_3,Ank_4,SET
Model size405
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.29e-73
EggNOG OGsCOG2940@1|root,KOG1082@2759|Eukaryota
Ec32 ortholog descriptionEsV-1-1
Ec32 orthologEc-03_003700.1
DescriptionHistone-lysine N-methyltransferase
Cds size384
COG categoryZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789754.2353718-CDS-P-littoralis_Contig158:101080..1014641680789754.2353718-CDS-P-littoralis_Contig158:101080..101464Pylaiella littoralis U1_48CDSP-littoralis_Contig158 101081..101464 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789754.2545242-UTR-P-littoralis_Contig158:101464..1014851680789754.2545242-UTR-P-littoralis_Contig158:101464..101485Pylaiella littoralis U1_48UTRP-littoralis_Contig158 101465..101485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.34.1prot_P-littoralis_Contig158.34.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 101081..101464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.34.1

>prot_P-littoralis_Contig158.34.1 ID=prot_P-littoralis_Contig158.34.1|Name=mRNA_P-littoralis_Contig158.34.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=128bp
MPSTLGKLYDAAASGSVERTVAVLSQGSVDIDGGYGDGGRTPLMVASTMG
YLRVVRVLLRLGARVSVADNDGATALHLSIVNKHLAVSKALIKAGADTEA
LGVDGTPLHVAAAKGFHEGMVVLIHAGS
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mRNA from alignment at P-littoralis_Contig158:101081..101485-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.34.1 ID=mRNA_P-littoralis_Contig158.34.1|Name=mRNA_P-littoralis_Contig158.34.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=405bp|location=Sequence derived from alignment at P-littoralis_Contig158:101081..101485- (Pylaiella littoralis U1_48)
GTACTTGTTTCAGTTCCCACCATGCCGTCAACTCTAGGCAAACTGTATGA TGCCGCAGCCAGTGGTTCCGTCGAGCGTACGGTTGCCGTGCTTTCTCAAG GGTCGGTCGACATCGACGGAGGCTACGGTGATGGGGGTCGGACCCCTCTT ATGGTGGCCTCCACCATGGGATACTTGCGGGTCGTAAGGGTCCTTTTGAG ACTAGGAGCCAGAGTGTCGGTGGCGGACAATGACGGTGCGACTGCTCTAC ACCTGTCGATTGTCAACAAACACCTGGCCGTCAGCAAGGCTCTGATTAAG GCGGGAGCGGACACTGAAGCGCTTGGTGTAGACGGTACGCCGCTTCACGT TGCCGCGGCGAAAGGATTCCACGAGGGAATGGTGGTGCTGATCCACGCGG GTTCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig158:101081..101485-

>mRNA_P-littoralis_Contig158.34.1 ID=mRNA_P-littoralis_Contig158.34.1|Name=mRNA_P-littoralis_Contig158.34.1|organism=Pylaiella littoralis U1_48|type=CDS|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig158:101081..101485- (Pylaiella littoralis U1_48)
ATGCCGTCAACTCTAGGCAAACTGTATGATGCCGCAGCCAGTGGTTCCGT
CGAGCGTACGGTTGCCGTGCTTTCTCAAGGGTCGGTCGACATCGACGGAG
GCTACGGTGATGGGGGTCGGACCCCTCTTATGGTGGCCTCCACCATGGGA
TACTTGCGGGTCGTAAGGGTCCTTTTGAGACTAGGAGCCAGAGTGTCGGT
GGCGGACAATGACGGTGCGACTGCTCTACACCTGTCGATTGTCAACAAAC
ACCTGGCCGTCAGCAAGGCTCTGATTAAGGCGGGAGCGGACACTGAAGCG
CTTGGTGTAGACGGTACGCCGCTTCACGTTGCCGCGGCGAAAGGATTCCA
CGAGGGAATGGTGGTGCTGATCCACGCGGGTTCT
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