mRNA_P-littoralis_Contig158.27.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.27.1
Unique NamemRNA_P-littoralis_Contig158.27.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:46037..48901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LR92
PFAMsLRR_8
Model size308
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue7.2e-09
EggNOG OGsCOG4886@1|root,KOG4237@2759|Eukaryota
Ec32 ortholog descriptionLeucine-rich repeat
Ec32 orthologEc-28_000190.1
Descriptioncorticospinal neuron axon guidance through spinal cord
Cds size306
COG categoryKLT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789753.5788996-CDS-P-littoralis_Contig158:46036..460681680789753.5788996-CDS-P-littoralis_Contig158:46036..46068Pylaiella littoralis U1_48CDSP-littoralis_Contig158 46037..46068 +
1680789753.588887-CDS-P-littoralis_Contig158:46373..464241680789753.588887-CDS-P-littoralis_Contig158:46373..46424Pylaiella littoralis U1_48CDSP-littoralis_Contig158 46374..46424 +
1680789753.6046686-CDS-P-littoralis_Contig158:47181..472371680789753.6046686-CDS-P-littoralis_Contig158:47181..47237Pylaiella littoralis U1_48CDSP-littoralis_Contig158 47182..47237 +
1680789753.6135952-CDS-P-littoralis_Contig158:47956..480311680789753.6135952-CDS-P-littoralis_Contig158:47956..48031Pylaiella littoralis U1_48CDSP-littoralis_Contig158 47957..48031 +
1680789753.622065-CDS-P-littoralis_Contig158:48809..489011680789753.622065-CDS-P-littoralis_Contig158:48809..48901Pylaiella littoralis U1_48CDSP-littoralis_Contig158 48810..48901 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.27.1prot_P-littoralis_Contig158.27.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 46037..48901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.27.1

>prot_P-littoralis_Contig158.27.1 ID=prot_P-littoralis_Contig158.27.1|Name=mRNA_P-littoralis_Contig158.27.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=102bp
LFDSLNVLEELFVLDNYGLTCVPDLPANAIANVFQSNTEVVTDGVCGCTP
TEVIFCDEDLSCQPGESGYTCVTATPAPTPPPSIAPTPAPSECLVNWAPG
I*
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mRNA from alignment at P-littoralis_Contig158:46037..48901+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.27.1 ID=mRNA_P-littoralis_Contig158.27.1|Name=mRNA_P-littoralis_Contig158.27.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2865bp|location=Sequence derived from alignment at P-littoralis_Contig158:46037..48901+ (Pylaiella littoralis U1_48)
CTCTTTGACTCTTTGAATGTCCTCGAAGAGTTGTGAGTACGTGTGGCCAA
AGTAATTCCCTAACACGATTCAACCCTGAAATACTTGAGGGCTCAATACC
AGGCGTATTCGGCGCGTTCATAGCCGAGCAACGCGAAACGTAGAGCGCTC
AACGCGAATCACATCAAACTGAAAGGCATAGGGGCGCCAATGTCGGCTCG
TCACCGGGAGCTCTCATGTTAGGTGTTCCGTGCAGCAGCACAAAGTTTAG
TGGGTTTCTTTGCGCCATTCGAGACGATGCGACTGACTCGGCAGCGTGAC
CCCGTTGGTATGTGTCCGTCGTCGTGCATGTCGACAGGTTTGTGTTGGAT
AATTATGGGCTTACGTGCGTTCCCGATCTTCCCGCCAAGTGAGTGAACAT
TCTTCCCGCGTCCCCTCTGCCTGCCAACCGCGACTTGTCGTTTACGATCA
ACTCATACGACAACGTTGAGACCGAAACAGTTATATTCCGCATGGTGAGG
CTCGCGAGTGGCGATACGCCCGTAGACGACAGGCTACTAGCGAACCGCAC
GATACGTGTGGCGTTACACCGCTGCATTGTTTCGGAATGCATATGAAGTA
TCTTGTATTAAACGAAGTAGATTGCAGTGGGAGAAACATCCACAAGAATC
GCGACCCATGGTACGATAGCCTGTGTGATAAAATATCCCCTTCAGTTTTT
GTCGGTGAGGGCAACGGTATGTTTTCTGTTTTACGACCGAAAAACACTTC
CTGGGTCATGCTTGTGTGAGACGTACAGTAGATGAGTAGGGCTAGGCGCC
CGGTCGACGGCGTCCGGCTCCTTATGGTGAATGCTTATTTGTGGACAAAC
CGCGATCGACCACTCCGAGAAATATGATCAAAATCGAACAGGCGGCAGAT
GCAAGGTCATTGCTTCGGCTGGGACCACGAACAACACGTCTGTGAAGTGC
CCGATTGTGACAGAACAAGCTTTCTCGCCCCTTGAACAGTTCGCATTTGC
AGTACAATTTCATCCGAATTGAGACCAGCTCGCTTGGTTGTTTGCAATTT
GATGACCAGCACACCTTACGGGCAGACGGGAGATACTACATATACTAAGC
TGTCTCGTCTCGCTCGTGCAACAACACCCCGCCTTAATTTTTCAGCGCCA
TCGCGAATGTCTTCCAGTCAAACACGGAGGTTGTCACTGATGGCGTGTGC
GGTAAGTGACTGGGCGTTCGTGCACACCATACACGCAGCTTTGCCAGCAT
CTCTCGTGTATGAGCTCTTGCTGTAGAGAGGGACAACCCTGATGAGATCA
GCGCGTATTCTGTAAACATGTAGTTCCGACGCACTTATTTCATGCCAGAT
ACGTGCGACAAATGCAAGGTGTAAAGTACAAGTGCGGAAACCAATGTCAA
AATTTTCCAGAGTTTTAGCGCCGGCGAGACATGATTTTGGACCGACGCGT
CCTCACTCCTACCCGTGACGATGAGTAATATTTTACTTGTCAGTGGTCAT
TGTTGGATCCTGAATTTTCTCAATCCCACAATGGTTTCTTCCTAATACAC
GTGTAATACCGGTCAGATCAATACCTCCTATGTCCCCCATGCTGAGCCCT
CATGGAGGGTGACAACCGTTTTCGCAGCGATTTCTGCCGGTCATACTCGA
GGAGCACACCGACATGTACCCTGCCTGACTGCCTTGGTGTCCAGCGTCTT
GCAATTGGTTGGCTCGTGCAAAATTCACTCGTGCTTTGAATTCCTCTGGT
CTACTGGACGATAACAAAGTCAATGGAGGGGCAGCGAGAGTTTGCAGTTC
GCAAATAGGTATTTCCACAAGTCATGTGACCGGTTATGCCATCGATGCCA
GACTTCCACGCCCAACAACTGCATGCATATCCCGTTGGTTGTCATTATGT
GTGCAAACATCGTTGGTCAGGTTGCACACCCACCGAGGTTATTTTCTGTG
ACGAGGATTTGAGCTGCCAACCTGGAGAGAGTGGCTACACCTGTGGTGAG
AAGAGCTTCTCACACAAATTGCTTTCAGTCTTCGTTCGAAGTGGGAAAGT
AGGGACACGCAGGGAGGGGGTCGGCAAACTGACTGGCTCTCGCAGCGATC
ATTCACTCGAAACCCGTTGTTCAAACTACTGTCCCGGGTGCGGCAAAGGT
TCTGTTGAGGCAACACAGGTCGTACTGCAGTGGAGAAGTATGGCGGAGCA
GTACTTTCGCGTGTCACGGTGGTATTTTGACGGATGTGATGATGTCGTGC
AAGCTTACTGTTTGGCGTCGCTGGTGTAATGCCGTAATGGTGATGCTTGC
TCGTAACTTCGTCGGTCGGTGGCATATAAAAAATCGTTTTTCAAGGCAGC
CCGGAGCCCCCCCGGGGATAGCTGCGATGTGGTTCCCACGGAGATCTTGA
CCTACCTCGGTCTCCCTCTGGCAGCATCCCTTCAGTCGTCCTGCTGCGTC
CCAGTTTCTCTTTTGCGTATTTCCCCCTTGCCATCGTGCGTCTTGTTGTA
CACGGCACGATTCATGATCGCTCTTTCTAGCGCACCGGGTTAACTTCATT
CGATGTTCCACGTTGATACGCCACTGCCTGAATTTTCGTTGAGGTTGTCA
ACCCTACCACAAACGCGAAAACATTACACCAATCTAGTAACTCTTTTCTC
GCGGGGTCATCACGTTCTAACTGCATTCTGTGTTACTAGTCTCGCAAGGA
GCCCCCCCCGTGTATCTGCACCACGCAACCTTCCCTTAACGTAGATACTC
TTCCGCGATTGCATTATTTTCAGTGACGGCGACGCCTGCCCCCACGCCGC
CGCCTTCGATCGCACCTACCCCAGCCCCTAGTGAGTGCCTCGTGAATTGG
GCACCCGGCATCTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig158:46037..48901+

>mRNA_P-littoralis_Contig158.27.1 ID=mRNA_P-littoralis_Contig158.27.1|Name=mRNA_P-littoralis_Contig158.27.1|organism=Pylaiella littoralis U1_48|type=CDS|length=306bp|location=Sequence derived from alignment at P-littoralis_Contig158:46037..48901+ (Pylaiella littoralis U1_48)
CTCTTTGACTCTTTGAATGTCCTCGAAGAGTTGTTTGTGTTGGATAATTA
TGGGCTTACGTGCGTTCCCGATCTTCCCGCCAACGCCATCGCGAATGTCT
TCCAGTCAAACACGGAGGTTGTCACTGATGGCGTGTGCGGTTGCACACCC
ACCGAGGTTATTTTCTGTGACGAGGATTTGAGCTGCCAACCTGGAGAGAG
TGGCTACACCTGTGTGACGGCGACGCCTGCCCCCACGCCGCCGCCTTCGA
TCGCACCTACCCCAGCCCCTAGTGAGTGCCTCGTGAATTGGGCACCCGGC
ATCTAG
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