mRNA_P-littoralis_Contig158.6.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.6.2
Unique NamemRNA_P-littoralis_Contig158.6.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.6.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:18856..23816 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2778
Hectar predicted targeting categoryother localisation
Exons10
Cds size1881
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.6.2prot_P-littoralis_Contig158.6.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 19718..23781 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789753.4352489-UTR-P-littoralis_Contig158:18855..197171680789753.4352489-UTR-P-littoralis_Contig158:18855..19717Pylaiella littoralis U1_48UTRP-littoralis_Contig158 18856..19717 -
1680789753.5517137-UTR-P-littoralis_Contig158:23781..238161680789753.5517137-UTR-P-littoralis_Contig158:23781..23816Pylaiella littoralis U1_48UTRP-littoralis_Contig158 23782..23816 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789753.444235-CDS-P-littoralis_Contig158:19717..199611680789753.444235-CDS-P-littoralis_Contig158:19717..19961Pylaiella littoralis U1_48CDSP-littoralis_Contig158 19718..19961 -
1680789753.454691-CDS-P-littoralis_Contig158:20097..202621680789753.454691-CDS-P-littoralis_Contig158:20097..20262Pylaiella littoralis U1_48CDSP-littoralis_Contig158 20098..20262 -
1680789753.4627874-CDS-P-littoralis_Contig158:20466..206361680789753.4627874-CDS-P-littoralis_Contig158:20466..20636Pylaiella littoralis U1_48CDSP-littoralis_Contig158 20467..20636 -
1680789753.4749608-CDS-P-littoralis_Contig158:20852..209661680789753.4749608-CDS-P-littoralis_Contig158:20852..20966Pylaiella littoralis U1_48CDSP-littoralis_Contig158 20853..20966 -
1680789753.4860735-CDS-P-littoralis_Contig158:21193..215281680789753.4860735-CDS-P-littoralis_Contig158:21193..21528Pylaiella littoralis U1_48CDSP-littoralis_Contig158 21194..21528 -
1680789753.4949713-CDS-P-littoralis_Contig158:21757..218591680789753.4949713-CDS-P-littoralis_Contig158:21757..21859Pylaiella littoralis U1_48CDSP-littoralis_Contig158 21758..21859 -
1680789753.5093935-CDS-P-littoralis_Contig158:22053..221581680789753.5093935-CDS-P-littoralis_Contig158:22053..22158Pylaiella littoralis U1_48CDSP-littoralis_Contig158 22054..22158 -
1680789753.5202909-CDS-P-littoralis_Contig158:22311..224311680789753.5202909-CDS-P-littoralis_Contig158:22311..22431Pylaiella littoralis U1_48CDSP-littoralis_Contig158 22312..22431 -
1680789753.5288932-CDS-P-littoralis_Contig158:22835..229581680789753.5288932-CDS-P-littoralis_Contig158:22835..22958Pylaiella littoralis U1_48CDSP-littoralis_Contig158 22836..22958 -
1680789753.5419624-CDS-P-littoralis_Contig158:23378..237811680789753.5419624-CDS-P-littoralis_Contig158:23378..23781Pylaiella littoralis U1_48CDSP-littoralis_Contig158 23379..23781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.6.2

>prot_P-littoralis_Contig158.6.2 ID=prot_P-littoralis_Contig158.6.2|Name=mRNA_P-littoralis_Contig158.6.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=627bp
MPACSIVSGCTNPTLPISSHKCYICSTSLHNLCVQAANGTQCAPTQWLCG
LTYCVANPPNPSNGGMASGSSAGPSGSPTPSCAAGSSCTSNSGTDPLSMH
CQRCLSACHLLCLPEVNNTVGVCTGCSSGATAASAVDVTGKGKGKGPALP
AAFVAQTANSPANSTPQAAASALGAGAAVSQPNTLPATPLQTPAPVVNPY
ATPGVPAARGIGGFSGAAASQASSTAPQTPAPVFNPYLPAVGSTAGGGSA
GGGQSKQPTPKNKGSAAMKNPYTTPTNTGGASSVGGRRTSARLNVGSSEK
GTPSVSDTKSVIATAVKVSCFEAVPQAFASKDNRDAICALVKSELFEQTI
LEAVSRKRPQQCPSKKAIDRAVAESGACVTGIVNSVLEPSLKKAIQRMSS
ASDKLSKVVDGMGGDEKKTKKKSGSAPLPTTAAQVKLDAEQYAGLVKDVG
NNVMAQMETRLQVMACHIITKVSSAAVASPEVVAAPLTKDSDVSEKKKHR
YPRKAPSRKKHDEETESESSERSSSSGADTPPSFKRKGKTQRGKPRKKPA
LQRVDQNASQMAHQAPQHAGPQHAVVGGVPANGIMQTFTGMNPVGFPANA
QTASVPRFGGQPMPGTNSTWLFPGGF*
back to top

mRNA from alignment at P-littoralis_Contig158:18856..23816-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.6.2 ID=mRNA_P-littoralis_Contig158.6.2|Name=mRNA_P-littoralis_Contig158.6.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4961bp|location=Sequence derived from alignment at P-littoralis_Contig158:18856..23816- (Pylaiella littoralis U1_48)
AAGTGTGGGAATCGCCGAAAGGCACGCCTGTCGACATGCCTGCGTGCTCT
ATTGTTTCGGGGTGCACGAATCCTACGCTCCCGATCTCCTCCCACAAGTG
CTACATCTGCAGCACATCTCTGCACAACCTGTGTGTGCAAGCAGCAAACG
GAACGCAATGTGCTCCAACACAGTGGCTGTGCGGGCTCACCTACTGCGTA
GCTAACCCACCTAACCCATCCAACGGTGGTATGGCTAGTGGATCCAGTGC
GGGACCCAGCGGATCGCCAACACCGTCGTGCGCCGCTGGGTCAAGCTGCA
CCAGCAACAGCGGCACCGATCCGCTTTCCATGCATTGTCAGCGATGCCTT
TCAGCTTGCCACCTGCTTTGCCTTCCCGAAGTCAACAATACTGTCGGCGT
GTGCACGGGCTGTTCATCTGGGGCAACTGCCGCATCAGGTAAGCGAAGAC
ATAGTACTCAGTCTTGTGGATGGGGATTTTCCGAACATAGGACGCGGTCT
CTCGGCATCGATCCAGGTAATATACTCGTAGTCGCCTGTGTCCTGAAACA
CGAGTTTGAAAATAAAAAACGTCGACCTACATTCGCGGGTCCCTGCAATA
CACACAGCATGCAGTACTTCAGGCTAGGATACAAGCGCGTGCTTTATCAC
ACAAGCTTAGGGTTCGTGTAAGCGGTGTAGCCCTCACCACTCGCATTGAC
TCACGCACTGGGAAACCCACGTACTCCGGTGATTTCTGCTTTGACTTCTC
TTTACTTTTCGCGCCCCAATTGGTTGGTGTTTGGTGTTCAAAAATGTCGA
TTTATGTCATGCATCTCTCTGACGAAACTCTACACGTCACATGCGCATCT
TTTCACAGCGGTGGATGTAACCGGCAAGGGGAAGGGGAAGGGACCAGCTC
TCCCTGCTGCTTTTGTTGCGCAGACGGCGAACTCACCCGCCAACAGCACT
CCTCAGGCGGCAGCTTCAGCCCTAGGTGCAGGTAATATACTCATATACTT
AGTACTTGTATTAAAATGGAACTTGATTTTTCAAAAGTCGAGAAAATTTC
AACGTCTCTTCGGTTGTTGACCGTATGATAGTTTTTTTTGTCTTTGTCAC
ATGTGCTTTTAAGCACTTCGTAAATTATACTCAAGAGTATTTGCGTAGAA
CTTGAGGTTAGGGTCAAAGAGGTCACCTCCGTTGGAATACGGCGGTGAAA
CCGCAAGGAAGTTGTTGTTTACTCTCGAAAACCGAAATCGCCCTGTATTC
CTGTGACAAACCTTCACAGTGAGTTTGACTCTTTTGTAGCCTTCTGTGTA
TCCTTCTGTGTTCGGGTCTTATTTTCGCTTTGACCACAGCAGTAGAAACA
TTCTTTCCGCCCCCCGCTCCTCAACCGTCTTCCAGGTGCGGCTGTTTCGC
AGCCGAACACGCTCCCCGCCACCCCACTCCAGACCCCGGCCCCTGTTGTG
AACCCCTACGCCACTCCTGGCGTGCCGGCAGCACGAGGCATAGGTGGCTT
CTCAGGTGGGTCGATCCGAGATGTTGCATGTGAGAACTGCTGTTGTGCGC
GACGGAATACATACGTGTCATGTGCGTTGTGTCTTTCATCGTTTTATCGA
GTAGTTGCAAGTATAATAACGACCTTACTTTCGCCCCCGTGCCGTGAGGC
TCGTGCAGGTGCGGCCGCTTCGCAGGCGTCCTCGACTGCACCTCAGACTC
CGGCCCCCGTCTTTAACCCCTATCTCCCTGCTGTCGGGTCGACAGCAGGA
GGTGGGTCTGCAGGTGCGTAGTTTTAAAACGTTTAACTTTCGTATTTGCG
CGTAGTACCACTGCTGTGGCTGCCTTATCGCGAGGCAGAACTTGCAATTT
GTCGAAAAATGGTTGAGTCTTCACCTGTGCTTTTATTTTATTTCCTATAC
CCACAAGAGTTGGTGACACCCTCACACACCCACCCTCGATGATCGGTTGA
CGCACAGGAGGGGGGCAGTCAAAGCAGCCTACACCCAAGAACAAAGGGTC
TGCGGCGATGAAGAACCCGTACACTACCCCGACTAATACTGGCGGTGCAT
CTTCCGTGGGTGAGTCGCTTGAGTGTTTTCTTGTTTTTGCAATTAATGAT
GGAAAGAGGTTCACGGTTTTCGTCGCGTGCGCTACGTTTTTTTTCTTTTT
ACTCGTAGACGGCCTCTTCTTGCAAAGCCGATCCACTCTCCACCCGACTT
TAAATGCGAACCACAAACAAGCACCTGAGCCATACTGACGTTGTCGACTA
CGTCTTGTCGGGATCCAATCTTCTCCGATCATGAGTAGGTGGCAGGCGAA
CCTCAGCCCGACTCAACGTGGGTTCGAGTGAGAAGGGGACGCCCTCCGTC
AGCGACACGAAGAGTGTTATCGCGACGGCCGTCAAGGTCAGCTGCTTCGA
GGCCGTCCCGCAGGCTTTCGCTTCGAAGGACAACAGGGATGCGATCTGTG
CGTTGGTGAAGTCTGAGTTGTTCGAGCAAACTATTCTTGAGGCGGTTTCG
AGGAAGCGGCCGCAGCAGTGTCCATCGAAGAAAGCAATCGACAGGGCCGT
GGCGGAGAGCGGGGCATGTGTGACCGGTATCGTGAATTCTGTGCTGGAGC
CGAGTCTGAAGAAGGCCATACAGGTGATGCGACTCTATTGGCTCAATTTA
ATTCGATTCACGGAGACCAAACCAAAACTCGCTTTTGAAGAGGTGGTACA
GGTTTCAAGGTGGTGCACGTTTCAAATCCGGCTGTCGCGGATTTGTAGCT
TGAGCTTGATGGACCGCATATCTCTGGCATTAATTTTGCTGATTCTGTTC
CTTGTATCGCCTTTGTTTTCTTTATTTTCATATTGTTATCGCGTGTACAG
AGAATGTCCAGTGCCTCCGACAAGCTGAGCAAGGTCGTGGACGGTATGGG
GGGAGACGAAAAAAAAACGAAGAAGAAATCCGGCTCCGCTCCTCTCCCGA
CGACGGCTGCGCAGGCACGACGCCAGAGTCTAAATCTTGTTTCAGGAAGA
AATCTCAGTTGGGTTAACCGTATCCGTTATGCACCCCTCAAAGTGACATG
ATGTATGCGCTGTTGAATTTGTTGAAGATTTGCGAGCTTTGTTGGTCGTC
CCTCAATTATCATTCGCCCCTTGCACAGCACACTACCCCTTTCACATGAA
GCTTCGAAATATCGTGCTCCTACAAATTAGGTTAAGCTCGACGCCGAGCA
GTATGCTGGACTTGTCAAGGACGTGGGTAATAACGTCATGGCGCAGATGG
AGACGCGACTCCAGGTGATGGCTTGTCACATAATCACCAAAGTCTCGTCC
GCCGCCGTGGCGTCGCCTGAGGTGGTCGCTGCTCCCCTGACGAAGGACAG
GTGGGGCGTTGAAATGATTTCTAGTGAGTCTCAAGAGTAAAAGCCGTTGT
CTAGTGATTCTTCATTCTGCATGAAATTTGAAAACTCCGGGATCACAGTA
ATGTCCCCAAGGGCAGGGAAATAACACCAACCCAGCAGTGTCTAATGTCA
TTTTGTTTTACTCCCCTGTGAACCGTGACTACTGATGCTGCCATCCTCTG
TGAGTGACGTCAGCGAGAAAAAGAAGCATCGGTACCCGAGGAAGGCTCCC
TCGCGCAAGAAGCACGACGAAGAAACAGAATCCGAGAGCTCTGAGCGGTC
ATCTTCGAGTGGGGCAGACACGCCGCCTTCCTTCAAGAGGAAGGGAAAGA
CGCAGCGTGGGAAACCCAGGTCTGTCCAATACTGTAGTGTTGTGCAAACA
TTGCTTGCGCTTCAGGGCTCTCGAAAAACACGGACACCATTTTAAAACCT
TCCCACCCTGACGGTCATCGTTGTTTGTTGGCTCCTTTTCAATGCAAAAA
AACAGGAAGAAACCGGCCCTGCAGAGGGTAGATCAAAACGCGAGTCAGAT
GGCTCACCAAGCACCTCAACACGCTGGCCCCCAACACGCTGTGGTCGGCG
GTGTCCCGGCGAACGGCATTATGCAAACCTTCACCGGAATGAACCCTGTT
GGGTTCCCGGCCAACGCTCAGACGGCGAGCGTCCCGAGGTTTGGTGGGCA
ACCCATGCCCGGCACCAACAGCACCTGGCTGTTTCCCGGAGGCTTTTAGT
TGTGTGCCTCGGTCTCAACTCCGTTCACGTCAAAAAGTGTTCGAGGTTAG
GTGGCATGTGACCCACTCGCGTCGCATTTGCCGGAATCGCCAGCAGGCAC
GTCATTGTTTTACTTCTGAATATTTTTTGTTTTGAATCTTTGGGTCGTTC
TCGATATGGATATGTAATTGGGATTCACGTTTATGTCGAAATGCTGCTGC
TTTGTAAATCACGTTCTGCTTTGTAAATCACGTACTGCTTTGATACACGT
ATCGTACTACGTTGTAAATCACGTACAACTGCTTTGTAAATCATGTACGG
CTTTGTAAATCACGTACGGCTTTGTAAAGCACGTACTGTACTACTTTGTA
AATCACGTACTGCTTTGTACATCACGGGGGTGGGGTCGGGTTTCGCAACA
CTTTTCACTGTATCAGCGAGGTTTGGGGCTCTTTTTGACGCCGCTGAAGA
GACAACAGTGGGGAGGGCTTTATTTATTGTTGTTTGCGTTTTTTTTTGGT
CGTTTGGAGACTCGTTTTTTAAGGGGGGAGAAGCCGAACTCTGGCGCCTG
ATTTTCTGCCGGCACAGAGCAGGAGGGTGCCGTAATTTCTCTTGTGAAAG
AGAGAGACAGAGAGCCGAGAGCTTACTTGTATGAGTTGGGGGGATGTTGG
CCATTGCTGGGAGCTTGAAGGTGTTCGAACCACAGTAGTACATTAGCGAA
CGTCCAGCTGCGTTTCGTTTTGTTCTGGCGCTATTGAACGTGACCTGGGC
GTCGTGTCTGTTCTTGGCGGATGCTTACTTTGTGTTTGTCAAAAGTTGCT
ATTCGCCAAAATATTTTTCGAACTACAGCAGTATGCGCGTGGTTGGTTGG
AATTTTCTCAT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig158:18856..23816-

>mRNA_P-littoralis_Contig158.6.2 ID=mRNA_P-littoralis_Contig158.6.2|Name=mRNA_P-littoralis_Contig158.6.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1881bp|location=Sequence derived from alignment at P-littoralis_Contig158:18856..23816- (Pylaiella littoralis U1_48)
ATGCCTGCGTGCTCTATTGTTTCGGGGTGCACGAATCCTACGCTCCCGAT
CTCCTCCCACAAGTGCTACATCTGCAGCACATCTCTGCACAACCTGTGTG
TGCAAGCAGCAAACGGAACGCAATGTGCTCCAACACAGTGGCTGTGCGGG
CTCACCTACTGCGTAGCTAACCCACCTAACCCATCCAACGGTGGTATGGC
TAGTGGATCCAGTGCGGGACCCAGCGGATCGCCAACACCGTCGTGCGCCG
CTGGGTCAAGCTGCACCAGCAACAGCGGCACCGATCCGCTTTCCATGCAT
TGTCAGCGATGCCTTTCAGCTTGCCACCTGCTTTGCCTTCCCGAAGTCAA
CAATACTGTCGGCGTGTGCACGGGCTGTTCATCTGGGGCAACTGCCGCAT
CAGCGGTGGATGTAACCGGCAAGGGGAAGGGGAAGGGACCAGCTCTCCCT
GCTGCTTTTGTTGCGCAGACGGCGAACTCACCCGCCAACAGCACTCCTCA
GGCGGCAGCTTCAGCCCTAGGTGCAGGTGCGGCTGTTTCGCAGCCGAACA
CGCTCCCCGCCACCCCACTCCAGACCCCGGCCCCTGTTGTGAACCCCTAC
GCCACTCCTGGCGTGCCGGCAGCACGAGGCATAGGTGGCTTCTCAGGTGC
GGCCGCTTCGCAGGCGTCCTCGACTGCACCTCAGACTCCGGCCCCCGTCT
TTAACCCCTATCTCCCTGCTGTCGGGTCGACAGCAGGAGGTGGGTCTGCA
GGAGGGGGGCAGTCAAAGCAGCCTACACCCAAGAACAAAGGGTCTGCGGC
GATGAAGAACCCGTACACTACCCCGACTAATACTGGCGGTGCATCTTCCG
TGGGTGGCAGGCGAACCTCAGCCCGACTCAACGTGGGTTCGAGTGAGAAG
GGGACGCCCTCCGTCAGCGACACGAAGAGTGTTATCGCGACGGCCGTCAA
GGTCAGCTGCTTCGAGGCCGTCCCGCAGGCTTTCGCTTCGAAGGACAACA
GGGATGCGATCTGTGCGTTGGTGAAGTCTGAGTTGTTCGAGCAAACTATT
CTTGAGGCGGTTTCGAGGAAGCGGCCGCAGCAGTGTCCATCGAAGAAAGC
AATCGACAGGGCCGTGGCGGAGAGCGGGGCATGTGTGACCGGTATCGTGA
ATTCTGTGCTGGAGCCGAGTCTGAAGAAGGCCATACAGAGAATGTCCAGT
GCCTCCGACAAGCTGAGCAAGGTCGTGGACGGTATGGGGGGAGACGAAAA
AAAAACGAAGAAGAAATCCGGCTCCGCTCCTCTCCCGACGACGGCTGCGC
AGGTTAAGCTCGACGCCGAGCAGTATGCTGGACTTGTCAAGGACGTGGGT
AATAACGTCATGGCGCAGATGGAGACGCGACTCCAGGTGATGGCTTGTCA
CATAATCACCAAAGTCTCGTCCGCCGCCGTGGCGTCGCCTGAGGTGGTCG
CTGCTCCCCTGACGAAGGACAGTGACGTCAGCGAGAAAAAGAAGCATCGG
TACCCGAGGAAGGCTCCCTCGCGCAAGAAGCACGACGAAGAAACAGAATC
CGAGAGCTCTGAGCGGTCATCTTCGAGTGGGGCAGACACGCCGCCTTCCT
TCAAGAGGAAGGGAAAGACGCAGCGTGGGAAACCCAGGAAGAAACCGGCC
CTGCAGAGGGTAGATCAAAACGCGAGTCAGATGGCTCACCAAGCACCTCA
ACACGCTGGCCCCCAACACGCTGTGGTCGGCGGTGTCCCGGCGAACGGCA
TTATGCAAACCTTCACCGGAATGAACCCTGTTGGGTTCCCGGCCAACGCT
CAGACGGCGAGCGTCCCGAGGTTTGGTGGGCAACCCATGCCCGGCACCAA
CAGCACCTGGCTGTTTCCCGGAGGCTTTTAG
back to top