mRNA_P-littoralis_Contig158.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.3.1
Unique NamemRNA_P-littoralis_Contig158.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig158.3.1 vs. uniprot
Match: A0A6P4ZST3_BRABE (uncharacterized protein LOC109481748 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZST3_BRABE)

HSP 1 Score: 160 bits (405), Expect = 5.400e-39
Identity = 115/373 (30.83%), Postives = 188/373 (50.40%), Query Frame = 2
Query:  443 CTKQQEQDTKIRDLQDRVQALEEELTTLGVGLKKKQGDLKACAPWRASRGIDSSILQGLCEDSCRSLC-GLSGAESLDDLWRFLDYGGRAQSMNFY----NADKEQASGLKDDGRRIERRSK-KLGGTNGLFFALFVMRTSTSLRVASTLFDVSESTGGRAFTAWLDLLGGCLRALVRLPDVNSVVASAPPNYRRRGLSSVAVVLDGTEVWVDKVWQTDAQHALWSPYKKTYTAKLLIGVTPAGAICYVSDAYAGRISDVELVKASGIIDDLERGGFGGKGMHVMADRGFNAMAPILINIGMHYVAPPSKRRGEDQFTEEDAGITRDVANLRIHVERAIGAIKQWRILDTKFDSQQMDNIGPIALVCAALVNL 1543
            CT++Q    KI  L+ RV+ LE+E+T+L     K  G        ++S          L  D+  + C GL   ++ +D++R+L+    AQ + ++    ++ K +    K +G   +R SK KL         L  +R   ++   + LF +  S+  +  + W+  L G L+ L+  P  +++  + P  ++ +  S +  ++D TE+++++    + Q A WS YKK  T K+L+G+TP G I ++S AY GR SDV + + SG +D +E          +MADRGF     +L+      + P ++  G+ Q        T+ VANLRIHVERAI  +K +RILD  F    +     I  VCAALVNL
Sbjct:  169 CTQKQ---MKIDSLEHRVEELEQEITSLKTQQVKSGG--------KSSGKKKVFTADTLKTDNDINQCTGLRSKQAFNDMYRYLEP--HAQKLTYWKSTESSPKTKRPTTKGNGTPRKRGSKRKLSLREEFLLTLMRLRLGLTINFLAILFGLVPSSCSQIVSTWVRFLSGTLQPLIVWPSRHAISTTLPTQFKNK-CSRIRCIMDCTEIFIERPRNLEMQAATWSDYKKHNTMKVLVGITPNGHISFLSKAYGGRASDVSITRKSGFLDLVEPNDV------IMADRGFPIQEDLLLRHATLQIPPAAQ--GKRQMARNKVKKTKTVANLRIHVERAINRLKDFRILDGTFPISLLPAADDIIKVCAALVNL 519          
BLAST of mRNA_P-littoralis_Contig158.3.1 vs. uniprot
Match: A0A6J8DR39_MYTCO (Uncharacterized protein n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8DR39_MYTCO)

HSP 1 Score: 144 bits (363), Expect = 1.590e-34
Identity = 85/253 (33.60%), Postives = 138/253 (54.55%), Query Frame = 2
Query:  785 RSKKLGGTNGLFFALFVMRTSTSLRVASTLFDVSESTGGRAFTAWLDLLGGCLRALVRLPDVNSVVASAPPNYRRRGLSSVAVVLDGTEVWVDKVWQTDAQHALWSPYKKTYTAKLLIGVTPAGAICYVSDAYAGRISDVELVKASGIIDDLERGGFGGKGMHVMADRGFNAMAPILINIGMHYVAPPSKRRGEDQFTEEDAGITRDVANLRIHVERAIGAIKQWRILDTKFDSQQMDNIGPIALVCAALVNL 1543
            R +KL G +  F  L  +R     +  +  F+VS ST  + F  W+DL+   L  LV  PD  +V  + P +++RR   +  V++D TE++ +       +  ++S YK   T K+LIG++P G I +VSD ++G ISD ++ K+SG+ID  E G        +M D+GF  ++ +    G++ + PP+K+ G+   T+ +   TR +ANLRIHVERA+  IK +RI+         + +  I  +  AL NL
Sbjct:  111 RPQKLRGVDEFFMVLMRLRLGLLTQDVARRFNVSVSTCSKIFNKWIDLMYEHLNFLVAWPDRETVKCNMPDSFKRR-YPNCRVIVDCTEIFTETPQSLSNKGRMYSDYKSHMTWKVLIGISPNGVITHVSDLWSGSISDKQITKSSGLIDKCEPGDA------IMGDKGF-LISDMCTPKGIYLIVPPTKKNGK--LTKHEVEKTRRIANLRIHVERAMERIKNFRIIQGVMPISMSEKVSKIVFIVCALCNL 353          
BLAST of mRNA_P-littoralis_Contig158.3.1 vs. uniprot
Match: A0A131XS54_IXORI (Putative isl2eu-1 adi n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A131XS54_IXORI)

HSP 1 Score: 140 bits (352), Expect = 2.540e-34
Identity = 84/222 (37.84%), Postives = 112/222 (50.45%), Query Frame = 2
Query:  875 FDVSESTGGRAFTAWLDLLGGCLRALVRLPDVNSVVASAPPNYRRRGLSSVAVVLDGTEVWVDKVWQTDAQHALWSPYKKTYTAKLLIGVTPAGAICYVSDAYAGRISDVELVKASGIIDDLERGGFGGKGMHVMADRGFNAMAPILINIGMHYVAPPSKRRGEDQFTEEDAGITRDVANLRIHVERAIGAIKQWRILDTKFDSQQMDNIGPIALVCAALVN 1540
            F VSEST  R F  WL +L   LR + RLP ++ V  + P  +R        ++LD TEV + K    +AQ   +S YK   T K L+G+TP   I +VSD + G  SD  +V   G++D LE G        VM D+GF      L+ +G+    PP +  GE Q + ED   TR VA  R+HVERAI  IK++ + DT       D    I   CA L N
Sbjct:   10 FGVSESTLSRTFARWLFMLNSVLRDITRLPQLHEVQRNMPECFRE--FPDTRIILDSTEVRIQKPSALEAQRKTFSSYKHANTMKCLVGITPDCLIAFVSDLFGGSTSDRAIVDRCGVLDLLESGDA------VMVDKGFKVQD--LLPVGVKLYIPPFRIAGEKQMSREDVVCTRKVAAARVHVERAIRRIKEFHVFDTPLPLNMADIADEIFATCALLSN 221          
BLAST of mRNA_P-littoralis_Contig158.3.1 vs. uniprot
Match: A0A147BIZ4_IXORI (Putative isl2eu-1 adi (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A147BIZ4_IXORI)

HSP 1 Score: 142 bits (359), Expect = 3.360e-34
Identity = 89/242 (36.78%), Postives = 120/242 (49.59%), Query Frame = 2
Query:  815 LFFALFVMRTSTSLRVASTLFDVSESTGGRAFTAWLDLLGGCLRALVRLPDVNSVVASAPPNYRRRGLSSVAVVLDGTEVWVDKVWQTDAQHALWSPYKKTYTAKLLIGVTPAGAICYVSDAYAGRISDVELVKASGIIDDLERGGFGGKGMHVMADRGFNAMAPILINIGMHYVAPPSKRRGEDQFTEEDAGITRDVANLRIHVERAIGAIKQWRILDTKFDSQQMDNIGPIALVCAALVN 1540
            LF  L  +RT+   +  +  F VSEST  R F  WL +L   LR + RLP ++ V  +    +R        +VLD TEV + K    +AQ   +S YK   T K L+G+TP   I +VSD + G  SD  +V   G++D LE G        VM D+GF      L+ +G+    PP +  GE Q + ED   TR VA  R+HVERAI  IK++ + DT       D    I   CA L N
Sbjct:   92 LFMVLVRLRTAMPCKEIARNFGVSESTLSRTFARWLFMLNSVLRDITRLPQLHEVQRNMLECFRE--FPDTRIVLDSTEVRIQKPSALEAQRKTFSSYKHANTMKCLVGITPDCLIAFVSDLFGGSTSDRAIVDRCGVLDLLESGDA------VMVDKGFKVQD--LLPVGVKLYIPPFRIAGEKQMSREDVVCTRKVAAARVHVERAIRRIKEFHVFDTPLPLNMADIADEIFATCALLSN 323          
BLAST of mRNA_P-littoralis_Contig158.3.1 vs. uniprot
Match: A0A6J8DRP4_MYTCO (THAP-type domain-containing protein n=2 Tax=Mytilus TaxID=6548 RepID=A0A6J8DRP4_MYTCO)

HSP 1 Score: 144 bits (362), Expect = 2.420e-33
Identity = 85/253 (33.60%), Postives = 138/253 (54.55%), Query Frame = 2
Query:  785 RSKKLGGTNGLFFALFVMRTSTSLRVASTLFDVSESTGGRAFTAWLDLLGGCLRALVRLPDVNSVVASAPPNYRRRGLSSVAVVLDGTEVWVDKVWQTDAQHALWSPYKKTYTAKLLIGVTPAGAICYVSDAYAGRISDVELVKASGIIDDLERGGFGGKGMHVMADRGFNAMAPILINIGMHYVAPPSKRRGEDQFTEEDAGITRDVANLRIHVERAIGAIKQWRILDTKFDSQQMDNIGPIALVCAALVNL 1543
            R +KL G +  F  L  +R     +  +  F+VS ST  + F  W+DL+   L  LV  PD  +V  + P +++RR   +  V++D TE++ +       +  ++S YK   T K+LIG++P G I +VSD ++G ISD ++ K+SG+ID  E G        +M D+GF  ++ +    G++ + PP+K+ G+   T+ +   TR +ANLRIHVERA+  IK +RI+         + +  I  +  AL NL
Sbjct:  250 RPQKLRGVDEFFMVLMRLRLGLLTQDLARRFNVSVSTCSKIFNKWIDLMYEHLNFLVAWPDRETVKCNMPDSFKRR-YPNCRVIVDCTEIFTETPQSLSNKGRMYSDYKSHMTWKVLIGISPNGVITHVSDLWSGSISDKQITKSSGLIDKCEPGDA------IMGDKGF-LISDMCTPKGIYLIVPPTKKNGK--LTKHEVEKTRRIANLRIHVERAMERIKNFRIIQGVMPISMSEKVSKIVFIVCALCNL 492          
BLAST of mRNA_P-littoralis_Contig158.3.1 vs. uniprot
Match: A0A6P7W3P5_IXOSC (uncharacterized protein LOC115330279 isoform X1 n=8 Tax=Ixodes scapularis TaxID=6945 RepID=A0A6P7W3P5_IXOSC)

HSP 1 Score: 143 bits (360), Expect = 3.060e-33
Identity = 97/306 (31.70%), Postives = 149/306 (48.69%), Query Frame = 2
Query:  629 SCRSLCGLSGAESLDDLWRFLDYGGRAQSMNFYNADKEQASGLKDDGRRIERRSKKLGGTNGLFFALFVMRTSTSLRVASTLFDVSESTGGRAFTAWLDLLGGCLRALVRLPDVNSVVASAPPNYRRRGLSSVAVVLDGTEVWVDKVWQTDAQHALWSPYKKTYTAKLLIGVTPAGAICYVSDAYAGRISDVELVKASGIIDDLERGGFGGKGMHVMADRGF--NAMAPILINIGMHYVAPPSKRRGEDQFTEEDAGITRDVANLRIHVERAIGAIKQWRILDTKFDSQQMDNIGPIALVCAALVN 1540
            +C    GL       +L+ FL+   RA  M ++  +++ A   KD       R++++   +  F  L  +RT  + +  +  F++SE    + F  W+  L   LR L++ P V  +  + P  + +   S+   VLD TEV + K     AQ   +SPYK   T K ++G TP G IC+VS  + G +SD  +V+ SG++D LE G        +M D+GF  N++ P     G+    P  ++  E Q  EED   TR VA+ R+ +ERAIG IKQ+  LD  F    +D       VC  L N
Sbjct:  180 NCLYYTGLPEFSVFQNLFNFLEL--RAAKMTYWLGNRKTAGETKD-------RTREMSLIDEFFMVLVRLRTGMAGKELARNFNISEGQVSKVFVTWIKFLQRQLRVLLQFPTVAEIQPNLPNAFHK--FSNTRAVLDRTEVRIQKPSSLLAQRQTFSPYKHYNTYKAVVGCTPEGYICHVSQLWGGTVSDRMIVEESGLVDQLESGDA------IMVDKGFKFNSLPP-----GVQVHIPCFRQPNEPQMPEEDVAHTRRVASARVVIERAIGRIKQFHFLDRPFPISMIDIADEAFQVCCFLSN 463          
BLAST of mRNA_P-littoralis_Contig158.3.1 vs. uniprot
Match: A0A8B6F160_MYTGA (Uncharacterized protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6F160_MYTGA)

HSP 1 Score: 142 bits (359), Expect = 5.780e-33
Identity = 89/283 (31.45%), Postives = 147/283 (51.94%), Query Frame = 2
Query:  695 YGGRAQSMNFYNADKEQASGLKDDGRRIERRSKKLGGTNGLFFALFVMRTSTSLRVASTLFDVSESTGGRAFTAWLDLLGGCLRALVRLPDVNSVVASAPPNYRRRGLSSVAVVLDGTEVWVDKVWQTDAQHALWSPYKKTYTAKLLIGVTPAGAICYVSDAYAGRISDVELVKASGIIDDLERGGFGGKGMHVMADRGFNAMAPILINIGMHYVAPPSKRRGEDQFTEEDAGITRDVANLRIHVERAIGAIKQWRILDTKFDSQQMDNIGPIALVCAALVNL 1543
            Y G      FY   +   S +K        R +KL G + LF  L  +R     +  +  F++S ST  + F  W+DL+   L  LV  PD  +V  + P +++RR   +  V++D TE++ +       +  ++S YK   T K+LIG++P G I +VSD ++G ISD ++ K+SG+I+  + G        +M D+GF  ++ +    G++ + PP+K+ G+   T+ +   TR +ANLRIHVERA+  IK +RI+         + +  I  +  AL NL
Sbjct:  216 YTGLPNKPTFYLLYEHIMSNIKIVEPETGGRPQKLRGVDELFMVLMRLRLGLLTQDLARRFNISVSTCSKIFNKWIDLMYEHLHFLVAWPDRETVKCNMPDSFKRR-YPNCRVIIDCTEIFTETPQSLSNKGRMYSDYKSHMTWKVLIGISPNGVITHVSDLWSGSISDKQITKSSGLINKCDPGDA------IMGDKGF-LISDMCTPKGIYLIVPPTKKNGK--LTKHEVEKTRRIANLRIHVERAMERIKNFRIIQGVMPISMSEKVSKIVFIVCALCNL 488          
BLAST of mRNA_P-littoralis_Contig158.3.1 vs. uniprot
Match: UPI00077ACDDF (uncharacterized protein LOC107345859 n=2 Tax=Acropora TaxID=6127 RepID=UPI00077ACDDF)

HSP 1 Score: 136 bits (342), Expect = 6.940e-33
Identity = 77/223 (34.53%), Postives = 121/223 (54.26%), Query Frame = 2
Query:  875 FDVSESTGGRAFTAWLDLLGGCLRALVRLPDVNSVVASAPPNYRRRGLSSVAVVLDGTEVWVDKVWQTDAQHALWSPYKKTYTAKLLIGVTPAGAICYVSDAYAGRISDVELVKASGIIDDLERGGFGGKGMHVMADRGFNAMAPILINIGMHYVAPPSKRRGEDQFTEEDAGITRDVANLRIHVERAIGAIKQWRILDTKFDSQQMDNIGPIALVCAALVNL 1543
            F +  +T    FT W+ +L   L  LV  P  + V  + P  +++ G S+V  ++D TE++++       + A WS YK   TAK+L+ +TP GA  +VS A+ GR SDV + +     D  E          VMADRGF     +++     ++ P   RRG++QF++ +   T+  ANLRI+VE+AI  +K +R++  +     ++NI  I LVCAAL NL
Sbjct:   16 FGIGTTTVSNVFTTWIKILSKELGFLVYNPSKDVVKKTLPAKFKKPGYSNVRHIIDCTEIFIETPSNPTVRAATWSDYKHHNTAKVLVSITPNGAFNFVSKAWRGRTSDVNVTREPSFYDMCEPHD------EVMADRGFTIAEDLILRRCKLHIPPG--RRGKEQFSKAEVNKTKKTANLRIYVEQAIRRLKTFRLIKNELPISLLNNIDAIVLVCAALCNL 230          
BLAST of mRNA_P-littoralis_Contig158.3.1 vs. uniprot
Match: A0A6P7WIU4_IXOSC (uncharacterized protein LOC115313092 n=10 Tax=Ixodes scapularis TaxID=6945 RepID=A0A6P7WIU4_IXOSC)

HSP 1 Score: 137 bits (344), Expect = 7.570e-33
Identity = 92/263 (34.98%), Postives = 132/263 (50.19%), Query Frame = 2
Query:  758 KDDGRRIERRSKKLGGTNGLFFALFVMRTSTSLRVASTLFDVSESTGGRAFTAWLDLLGGCLRALVRLPDVNSVVASAPPNYRRRGLSSVAVVLDGTEVWVDKVWQTDAQHALWSPYKKTYTAKLLIGVTPAGAICYVSDAYAGRISDVELVKASGIIDDLERGGFGGKGMHVMADRGF--NAMAPILINIGMHYVAPPSKRRGEDQFTEEDAGITRDVANLRIHVERAIGAIKQWRILDTKFDSQQMDNIGPIALVCAALVN 1540
            K DG  ++RR+ KL   +  F  L  +RT  + R  S  F+++E+   + FT W++ L   LRAL+  P V       P ++ +    +  +VLD TEV   K     AQ   +SPYK   T K ++G TP G ICYVS  + G  SD  +V+ S ++  L+ G        +M D+GF  N + P     G+    PP ++  E Q  E+D   TR VA+ R+ VER IG +KQ+ ILD  F    MD    +  VC  L N
Sbjct:    9 KTDGE-MKRRTGKLDLRDEFFMVLVRLRTGMAGRELSRNFNITEAHVSKVFTTWINFLQRELRALIYFPTVLETRKKLPDSFHK--FPNTRIVLDATEVRTQKPSALLAQRQTFSPYKHYNTYKAIVGCTPNGYICYVSGLWGGSASDRTIVEDSELMGQLQPGDA------IMVDKGFKFNDLPP-----GVQVHIPPFRQPHEPQMPEQDVANTRQVASARVVVERVIGRVKQFHILDRPFPITMMDIAEQVFQVCCFLSN 257          
BLAST of mRNA_P-littoralis_Contig158.3.1 vs. uniprot
Match: UPI001F5FA577 (uncharacterized protein LOC101234787 n=1 Tax=Hydra vulgaris TaxID=6087 RepID=UPI001F5FA577)

HSP 1 Score: 142 bits (359), Expect = 1.160e-32
Identity = 93/261 (35.63%), Postives = 131/261 (50.19%), Query Frame = 2
Query:  782 RRSKKLGGTNGLFFALFVMRTSTSLRVASTLFDVSESTGGRAFTAWLDLLGGCL-RALVRLPDVNSVVASAPPNYRRRGLSSVAVVLDGTEVWVDKVWQTDAQHALWSPYKKTYTAKLLIGVTPAGAICYVSDAYAGRISDVELVKASGIIDDLERGGFGGKGMHVMADRGFNAMAPILINIGMHYVAPPSKRRGEDQFTEEDAGITRDVANLRIHVERAIGAIKQWRILDTKFDSQQMDNIGPIALVCAALVNLTRKPFA 1561
            ++ KKL   +     L  +R     +  +  F +S +   R FT W+ +L   L +ALV      S+  + PP + + G     V+LD  EV++++    D Q + WS YK   T K LIGV+P G I ++S  Y GR SD  + + SGI + LER         VMADRGF     +++N     V PP  R  + Q T ++   T+ VANLRIHVERAI  IK +RIL+       + +   I L C AL NL  K  A
Sbjct:  291 KKFKKLSQRDEFLLVLMRLRLGLLNQDLADRFGISPALCSRTFTTWIKMLSQVLGQALVVWLPRESIRNNLPPVFVKAGYQKCRVILDCAEVFIERSKSLDKQSSTWSEYKHHNTFKFLIGVSPTGYITFLSSCYGGRASDRFITRDSGIYNLLERDD------EVMADRGFQIQEDLILNF-CTLVVPPGARL-KSQLTTKEVQKTKHVANLRIHVERAINRIKTYRILNGSMSISMLQHADDILLTCGALCNLKPKLIA 543          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P4ZST3_BRABE5.400e-3930.83uncharacterized protein LOC109481748 n=1 Tax=Branc... [more]
A0A6J8DR39_MYTCO1.590e-3433.60Uncharacterized protein n=1 Tax=Mytilus coruscus T... [more]
A0A131XS54_IXORI2.540e-3437.84Putative isl2eu-1 adi n=1 Tax=Ixodes ricinus TaxID... [more]
A0A147BIZ4_IXORI3.360e-3436.78Putative isl2eu-1 adi (Fragment) n=1 Tax=Ixodes ri... [more]
A0A6J8DRP4_MYTCO2.420e-3333.60THAP-type domain-containing protein n=2 Tax=Mytilu... [more]
A0A6P7W3P5_IXOSC3.060e-3331.70uncharacterized protein LOC115330279 isoform X1 n=... [more]
A0A8B6F160_MYTGA5.780e-3331.45Uncharacterized protein n=1 Tax=Mytilus galloprovi... [more]
UPI00077ACDDF6.940e-3334.53uncharacterized protein LOC107345859 n=2 Tax=Acrop... [more]
A0A6P7WIU4_IXOSC7.570e-3334.98uncharacterized protein LOC115313092 n=10 Tax=Ixod... [more]
UPI001F5FA5771.160e-3235.63uncharacterized protein LOC101234787 n=1 Tax=Hydra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:9662..14026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog6087.XP_004211413.1
PFAMsDDE_Tnp_4,HTH_Tnp_4,THAP
Model size1814
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.9e-36
EggNOG OGs28TD2@1|root,2R03G@2759|Eukaryota,39UG8@33154|Opisthokonta,3BMFJ@33208|Metazoa
DescriptionDDE superfamily endonuclease
Cds size1491
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789753.3316016-UTR-P-littoralis_Contig158:9661..97431680789753.3316016-UTR-P-littoralis_Contig158:9661..9743Pylaiella littoralis U1_48UTRP-littoralis_Contig158 9662..9743 +
1680789753.4043326-UTR-P-littoralis_Contig158:13785..140261680789753.4043326-UTR-P-littoralis_Contig158:13785..14026Pylaiella littoralis U1_48UTRP-littoralis_Contig158 13786..14026 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789753.3824217-CDS-P-littoralis_Contig158:9743..103341680789753.3824217-CDS-P-littoralis_Contig158:9743..10334Pylaiella littoralis U1_48CDSP-littoralis_Contig158 9744..10334 +
1680789753.3955402-CDS-P-littoralis_Contig158:12885..137851680789753.3955402-CDS-P-littoralis_Contig158:12885..13785Pylaiella littoralis U1_48CDSP-littoralis_Contig158 12886..13785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.3.1prot_P-littoralis_Contig158.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 9744..13785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.3.1

>prot_P-littoralis_Contig158.3.1 ID=prot_P-littoralis_Contig158.3.1|Name=mRNA_P-littoralis_Contig158.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=497bp
MPNSRKKCICQSEFCQNNGSVGEARVPRGRRQQFQQALGLENELTQPDLR
VWLGHFAADDLEASKQGSGAGGTEVTVRLKDGALPTQTDVEMAEASRGAL
SQLRRSQAVCGRHRAALLEACTKQQEQDTKIRDLQDRVQALEEELTTLGV
GLKKKQGDLKACAPWRASRGIDSSILQGLCEDSCRSLCGLSGAESLDDLW
RFLDYGGRAQSMNFYNADKEQASGLKDDGRRIERRSKKLGGTNGLFFALF
VMRTSTSLRVASTLFDVSESTGGRAFTAWLDLLGGCLRALVRLPDVNSVV
ASAPPNYRRRGLSSVAVVLDGTEVWVDKVWQTDAQHALWSPYKKTYTAKL
LIGVTPAGAICYVSDAYAGRISDVELVKASGIIDDLERGGFGGKGMHVMA
DRGFNAMAPILINIGMHYVAPPSKRRGEDQFTEEDAGITRDVANLRIHVE
RAIGAIKQWRILDTKFDSQQMDNIGPIALVCAALVNLTRKPFACTT*
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mRNA from alignment at P-littoralis_Contig158:9662..14026+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.3.1 ID=mRNA_P-littoralis_Contig158.3.1|Name=mRNA_P-littoralis_Contig158.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4365bp|location=Sequence derived from alignment at P-littoralis_Contig158:9662..14026+ (Pylaiella littoralis U1_48)
GCTTTGCTTGGAGTGTGTGAGAGCCATCTCGGCAACATACGGCCGTTTTG GCAAAGGTAGACAGGCGCAGGTAGGGCGTCTTATGCCGAACAGCAGGAAA AAATGTATCTGCCAGTCAGAGTTCTGTCAAAACAACGGGTCCGTGGGTGA AGCCAGAGTCCCTCGGGGTAGGAGACAGCAGTTTCAACAAGCTCTCGGCC TGGAGAACGAGCTGACACAGCCAGACCTAAGGGTGTGGCTCGGTCACTTT GCCGCCGATGACCTGGAGGCTAGCAAACAAGGAAGCGGGGCCGGCGGGAC AGAGGTGACGGTGAGGTTGAAGGACGGGGCTCTTCCGACTCAGACAGACG TGGAGATGGCCGAAGCATCCAGAGGAGCCTTGTCCCAGCTGCGGCGAAGT CAGGCCGTCTGCGGTCGTCACCGGGCTGCACTGTTGGAAGCATGCACGAA GCAGCAGGAACAAGACACTAAGATAAGAGACTTGCAGGATCGAGTTCAGG CTCTGGAGGAAGAGTTGACAACTCTAGGGGTGGGGCTGAAGAAAAAACAA GGAGATCTAAAAGCGTGTGCTCCTTGGAGGGCGAGCCGCGGGATCGATTC ATCCATTCTCCAAGGCTTATGCGAGGACTCGTGCAGGAGCCTCTGCGGCC TGTCCGGCGCGGAATCTCTGGACGTGAGTTTTGAGGCTTTGTTGCTCGCA GTATCGTTTGTAGAGGGTGCGATGACGAGTCGCATCCGAAAGCACTTACC GTAATCATGCGAGTCATCGCACCCCCGTGTTAGCTTTTTTGCATTCCGTA TTGCTCAACAACCAAGGAGAGTACCACTGCCGAAAAGGGTGGATTTGGAA AGATCTCGTCGAGAGCTTTCGTATGACGGGTCGTTTGGTGTTCGCACTCT CCTGGTTATGGAGCAATACGGGATGCAAAAAAGCTAACACGGGGGTGCGA TGACTCGCATGATTACGGTAATCAATAAGCTGATTCTTCGTGTATCATCC TGTACTCTATTCACCTTTGCGATACACAGCAGGTAGTGCTCGTATGATAT GCTTTTGTGTCCTTGATGCGCAAAAAAAATAGTGTCCTGCGAAGGAATCA TCGGGCGTCGGCCTCCCCCTTTGCATGTTATAAATTAAGGCAAGCTCACC TTCCGAAGCAGCAGAGGCGAAGACTATCAGGTTGGGCCCGTCGCTTTTGG TTGACCGATGGTTCGATCGCTCTTACTAGGGGAGTTTATGGGATACAGCA GTGTGTACAGCAGTAAGATACTTCGCATGTTTTTTTTTCGTGGTTTTCGT CCGACGTCCTCGAAACTAAGGCTACTTTTTATGTGTCGAATCTGAATATC AAAAGTGATTCGTTTTCGATATTTGGCACAGATCCGGCATGTTATGTGAT CAGAAATGTGCCATTTTTGATAAAAACATTTTCAATAATCATTTTTGATC CAGCACCAGCTCAGAAATGAGCCTCATTTCTGATCTACTCCGCATATCAA AAATGATTATTGAAAACGTTTGAGACTCCGACGCAAGCCATCACACAACA CAAGGACCCACAGCAGCAGCAGCAGTACTGCCACATCACTACTGCTGCTG CTGCTGCTACATTATCGCGGGCGGTCAGCGTGTTACTTCCTCGTCGTCGC CCGCCAGCAGCGTGGCCCTTCACTGCTGCTGCTGCTGCTACATTATCGCG GGCGGTCAGCGTGTTACTTCCTCGTCGTCGCCCGCCAGCAGCGTGGCCCT TCATCCCATGGCGGCAGCAGCAGAGAGCGACTGATTGCGTTTCACCTGCA AGCACTCGTACACTGCTGTGCAGATAGATGCCCTGCATATGAATCATCAG CTGTAGTCTATACTTGTTCTTGCTACGAATAGCCTCCCAAAAAAAGCTTG AAATAAATAGGTCTGGGTGTACTCCGAGTAGTTGAGCGGGAGGGACAACA CCTTGTTGTCTAGATGTATGGTTTACGCGCGGTGCTGCTCTGTTCTGGCT GTGACCCAGCGCGTCGTGCTCCATCCCGAGAGGGTGCTGCGCTCGCTCCA ATTTTTTGAAATGTGCTACTACTGCTGTATACTACCCAAACGGCTCTTCT TGGGATCCTACATATACGATACGTACTGCTGTACGAAAAATACGTTTTTG ATATTGATAAATTGTTTATTTTACACATAACATCTGATGTTGATACCACA CTGCGGGAATTGTCAATATCGAAAACGAATCAGAATTGATATTTTGATAC TTGACACATAAAAAGTAGCCTAAGTGTGCCTAAAACTTGAGCCTATGATA ACGAAAAGATCGATTAACTCCTCTGTGCGACACGGCCATGTTGTGGTTTC GTGCCTTTCACGCAAGTAAAACTTGAACCATCGCACAGCATGTTGTCCCG ATAACCAGACTAAAATTTGGCAGCTGTGAGCGCACCAAGAGAAAAATTAC GTGCGAGCACCTCACAGGCATACAGCCAGGGCCCGTAACAAGTTCTCACG ATAGACTGCTAACGTCCCGGGAGAGACTAGAAGGATTACCCGGTTATCGC GATTGCGCCTTCTGCTTTCAAACACCGCGGAATGACGGCTGTTCAGCGCA GTCCACCTTTGCCCTACTAAATCCAATGTCTCTCAGTACTTGTATGTGAA GCCCTCTTGATTTGGTCAATCTGGCATAGGGCCGGTTGCTACTGCTTGGT GCTTGGTGCGTTTGTTTGCTGCTGCGGTCATGGTGGTAGATGGTATGTTG ACTAGTAGACGAACTCTTCGCTGCTGTCTGGTTGCTGGGTGTTGGGCATG CGTGTCAAGCGCGAGGATATACCGGTGCTTCGGCGTATAATAATCGACTG CTGCTGTGAGTACTATTAACCATTGTTAATTTTGTTGCTGTTGCTCCATG CTGCGTGCGAGTCGTCCAGCACGTGCGCACGCACACACATGATAATATGT ATTTCCGTGTGTATTCGGGTAAGCCCGAATGGGCCAGGCTTCAAAAATAA ACAAATATAAATGAAGCATTCCATCTTTCGAAAAAATCCCACCCCGGGTT ACAAAAACTTTAAAAGTCACACAACGCGAAACATTAGTCAGATAACCAGA TGAAGGATTGGTGGCCCAATGCACCGTTTAAACGTGCTCCTCGATCGTGT TCGCTGCTTCCCTCGCGAACCTGCTCTTTTGTCCTTGGTCGTTTTGTGGC GCTCCTTTGCGCATGTTTGGGCAGGACCTCTGGAGATTCCTCGATTACGG AGGACGGGCGCAATCCATGAACTTCTACAACGCGGACAAGGAGCAGGCGT CGGGCCTGAAAGACGACGGACGTAGGATAGAGAGGCGGAGCAAGAAACTT GGAGGGACTAATGGCCTGTTTTTCGCCCTGTTCGTCATGCGCACCAGTAC GTCGCTCCGGGTTGCGTCGACGTTATTCGATGTCAGCGAGTCTACAGGCG GCAGGGCTTTCACCGCATGGCTGGATCTTCTAGGGGGTTGTTTGAGGGCT CTCGTTCGGTTGCCAGACGTAAATAGCGTGGTGGCGAGTGCGCCCCCTAA CTACCGCAGGAGAGGTCTTTCCTCAGTAGCTGTTGTCCTGGACGGTACAG AAGTCTGGGTAGACAAGGTCTGGCAGACGGACGCTCAGCATGCGCTGTGG TCTCCGTATAAAAAAACCTACACAGCCAAACTTCTCATAGGTGTTACTCC CGCAGGTGCTATCTGCTACGTCTCCGACGCGTATGCCGGACGGATAAGTG ATGTAGAGCTCGTGAAGGCTAGTGGCATCATCGATGACCTGGAGCGCGGG GGGTTCGGGGGTAAGGGTATGCATGTAATGGCTGACAGAGGTTTCAATGC CATGGCACCGATCCTGATCAATATAGGTATGCATTACGTTGCACCTCCTA GTAAGCGCAGGGGCGAGGACCAGTTTACGGAGGAGGACGCCGGGATCACG AGAGACGTTGCGAACCTCCGCATTCATGTAGAACGAGCCATCGGAGCTAT CAAGCAATGGCGTATTCTAGACACCAAGTTCGATTCGCAGCAGATGGATA ACATCGGGCCGATAGCTCTTGTTTGCGCGGCGCTCGTCAACCTCACTCGC AAGCCTTTTGCTTGCACGACCTGACGGTTGCGGCTGTTTCGAAATATCTA GATGGACTCTGCTGGTTTTTGCTACTCTATTCGGCTCACGAGACTGCGAC AACGACGTATTGGCGCAAAATAGGGTTTCGGCCATCCTTCATTTCCGTGT GCAGCGTCCGTAAAGTTGTCAAGGACGACAGTGTCTGTGTGACCATGTGT GGGGTAACGATGCTGTTTCACGTGTTGTCTGAGGGCATTGACCAGACTTG AAAATATAAAACGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig158:9662..14026+

>mRNA_P-littoralis_Contig158.3.1 ID=mRNA_P-littoralis_Contig158.3.1|Name=mRNA_P-littoralis_Contig158.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1491bp|location=Sequence derived from alignment at P-littoralis_Contig158:9662..14026+ (Pylaiella littoralis U1_48)
ATGCCGAACAGCAGGAAAAAATGTATCTGCCAGTCAGAGTTCTGTCAAAA
CAACGGGTCCGTGGGTGAAGCCAGAGTCCCTCGGGGTAGGAGACAGCAGT
TTCAACAAGCTCTCGGCCTGGAGAACGAGCTGACACAGCCAGACCTAAGG
GTGTGGCTCGGTCACTTTGCCGCCGATGACCTGGAGGCTAGCAAACAAGG
AAGCGGGGCCGGCGGGACAGAGGTGACGGTGAGGTTGAAGGACGGGGCTC
TTCCGACTCAGACAGACGTGGAGATGGCCGAAGCATCCAGAGGAGCCTTG
TCCCAGCTGCGGCGAAGTCAGGCCGTCTGCGGTCGTCACCGGGCTGCACT
GTTGGAAGCATGCACGAAGCAGCAGGAACAAGACACTAAGATAAGAGACT
TGCAGGATCGAGTTCAGGCTCTGGAGGAAGAGTTGACAACTCTAGGGGTG
GGGCTGAAGAAAAAACAAGGAGATCTAAAAGCGTGTGCTCCTTGGAGGGC
GAGCCGCGGGATCGATTCATCCATTCTCCAAGGCTTATGCGAGGACTCGT
GCAGGAGCCTCTGCGGCCTGTCCGGCGCGGAATCTCTGGACGACCTCTGG
AGATTCCTCGATTACGGAGGACGGGCGCAATCCATGAACTTCTACAACGC
GGACAAGGAGCAGGCGTCGGGCCTGAAAGACGACGGACGTAGGATAGAGA
GGCGGAGCAAGAAACTTGGAGGGACTAATGGCCTGTTTTTCGCCCTGTTC
GTCATGCGCACCAGTACGTCGCTCCGGGTTGCGTCGACGTTATTCGATGT
CAGCGAGTCTACAGGCGGCAGGGCTTTCACCGCATGGCTGGATCTTCTAG
GGGGTTGTTTGAGGGCTCTCGTTCGGTTGCCAGACGTAAATAGCGTGGTG
GCGAGTGCGCCCCCTAACTACCGCAGGAGAGGTCTTTCCTCAGTAGCTGT
TGTCCTGGACGGTACAGAAGTCTGGGTAGACAAGGTCTGGCAGACGGACG
CTCAGCATGCGCTGTGGTCTCCGTATAAAAAAACCTACACAGCCAAACTT
CTCATAGGTGTTACTCCCGCAGGTGCTATCTGCTACGTCTCCGACGCGTA
TGCCGGACGGATAAGTGATGTAGAGCTCGTGAAGGCTAGTGGCATCATCG
ATGACCTGGAGCGCGGGGGGTTCGGGGGTAAGGGTATGCATGTAATGGCT
GACAGAGGTTTCAATGCCATGGCACCGATCCTGATCAATATAGGTATGCA
TTACGTTGCACCTCCTAGTAAGCGCAGGGGCGAGGACCAGTTTACGGAGG
AGGACGCCGGGATCACGAGAGACGTTGCGAACCTCCGCATTCATGTAGAA
CGAGCCATCGGAGCTATCAAGCAATGGCGTATTCTAGACACCAAGTTCGA
TTCGCAGCAGATGGATAACATCGGGCCGATAGCTCTTGTTTGCGCGGCGC
TCGTCAACCTCACTCGCAAGCCTTTTGCTTGCACGACCTGA
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