mRNA_P-littoralis_Contig158.80.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.80.1
Unique NamemRNA_P-littoralis_Contig158.80.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:292607..295243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size621
Hectar predicted targeting categoryother localisation
Exons2
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789753.232249-UTR-P-littoralis_Contig158:292606..2926861680789753.232249-UTR-P-littoralis_Contig158:292606..292686Pylaiella littoralis U1_48UTRP-littoralis_Contig158 292607..292686 -
1680789753.2411766-UTR-P-littoralis_Contig158:294702..2947081680789753.2411766-UTR-P-littoralis_Contig158:294702..294708Pylaiella littoralis U1_48UTRP-littoralis_Contig158 294703..294708 -
1680789753.2648458-UTR-P-littoralis_Contig158:295110..2952431680789753.2648458-UTR-P-littoralis_Contig158:295110..295243Pylaiella littoralis U1_48UTRP-littoralis_Contig158 295111..295243 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789753.2543452-CDS-P-littoralis_Contig158:294708..2951101680789753.2543452-CDS-P-littoralis_Contig158:294708..295110Pylaiella littoralis U1_48CDSP-littoralis_Contig158 294709..295110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.80.1prot_P-littoralis_Contig158.80.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 294709..295110 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.80.1

>prot_P-littoralis_Contig158.80.1 ID=prot_P-littoralis_Contig158.80.1|Name=mRNA_P-littoralis_Contig158.80.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp
MTSSDPIYISILYPTGPPCSARRRNAPSPCTPVQWGCMCMLVVCVSSWRL
TMRGDRAEDLVELDLSLNLAADLCAVPVGGDSHPSATEEPIFQLAKGESQ
PLQSLLHLLRAMPLGQAWAVKDWVLQMIRVARP*
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mRNA from alignment at P-littoralis_Contig158:292607..295243-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.80.1 ID=mRNA_P-littoralis_Contig158.80.1|Name=mRNA_P-littoralis_Contig158.80.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2637bp|location=Sequence derived from alignment at P-littoralis_Contig158:292607..295243- (Pylaiella littoralis U1_48)
TCGATGTCCCATCGTGTGACGGGAGGTCGGAGGTGTAACTCTCTTAGCAG
CACACGTACATTGGGTGCCTCGCTCAGACCCCGGGCTGGCGGTGGGGTCC
GGCGTCGTTCGACGGGGGGTGCAGGATGACTTCATGACTTCTTCCGACCC
TATCTATATCTCGATACTGTACCCCACGGGACCCCCTTGCTCGGCTAGGC
GGCGCAATGCCCCATCACCCTGCACACCAGTACAGTGGGGGTGTATGTGC
ATGCTTGTTGTGTGTGTGTCGTCATGGAGGCTGACGATGAGAGGGGACAG
AGCAGAGGATCTGGTCGAACTCGACTTATCCCTCAACCTGGCCGCGGATT
TATGTGCAGTGCCTGTCGGTGGCGATTCTCATCCCTCCGCGACGGAAGAG
CCCATATTTCAACTTGCAAAGGGGGAGAGCCAGCCCCTTCAGAGCCTATT
GCACCTGCTGCGAGCGATGCCGCTAGGTCAAGCGTGGGCGGTCAAGGATT
GGGTGCTTCAGATGATCCGGGTGGCGAGGCCATAGAAGACGGTGAGTTGA
CATGGACGAGGGAGAGATGAGCAGAGCGTGATCTTAGATTGGCACCCTCC
CGGTGCTATCGATACAGCAGTGTCCAGAATGCGACGTATAATATCACCCC
CTCCCCCCTGGGCTCTTTTTTTCCTCGAACGACGATTACGCCGCCACGAA
CAGGATACCAATATCAAAATATACGGTGCGTTTTCACGACATATCTCCAA
CGCCACGCTTGTCGGCACCGAAAATGGGGCAAGGGGGATATACCTGGTAC
AAAAAAAGTCTTATGTTTTCACTCCGTAGGGGGGGGTCTTATCCTACGCA
ACCTACGGCTGTATCCTACGTATATATACCAAGGGGTACTTATATACAGC
CGCATATCGTTCTACCCCCCGCATAGGCAAGGGCAACACCAATAGTGGCC
AAACGGTTAGATGGCAGCTTTCTATTTTGTCGCATGCATGTTTATTTTTT
ACAAGCAGTTGGTCGGGGATTGCTGAGCAGAATTGTTGGGTTCCGTGCGA
TTTGGGTACCGTAAAGTACAGTCGAGGTCCCGGTTTACCGGCCCCTAGTG
GCAAGAAAAATAAGGGCCGGTAAACAGGGCAAACCGGTAAACCAGTATAC
CGGCATGTACCGGTAAACAGGTACCTGTTTACCGGTACATGCCGGTATAC
TGGGGAAAACGCCCCCACGAGCGTAGGAAGAGCAGGTGTATCTCCACAGA
CTTTGATGCAGTATGGCCTGTCTGTTTCTCCTGCTGTCCTGGTAACCAGC
ACCTACAGTAGTAGTATAATAGTATAGACGAGTGTGTGATCGCTGTACAG
TACCCACTGCTGGCTGTTGGTACTGGTGTTGGTACTGCTGGCCGATTCAT
TTGCTGCAGCGCATGACTGGCAGATACGGTTGACTTCCTCGTCGCCTTCA
GGATTTTGTATCTCGGCGCAAATGCGATGCAGACGACCTCCGCACGGGCC
ACAGCAGGAGAGTTCTGGGGTGATATTCCTGTCACTAAGGTGGCATAATT
CTCCTGCCGCACACGACATGGTGTGCAGGCAGGTGTTGGCTGCTACCCAC
AGCAACCGGAGTGCTGTGTTGTGTTGTGTTGTGTCGTGTGCAGCAGTGTG
TGTGGGAGTGTGCAGCAGCAGCAAAAGGGGCTCCGCAAGCATGAAAAAAG
GGAGGACCCCGGTATACCGGCACATAACCGGTAAACCGGGGTGCGGGCGT
GTCAAGAAAAAAAGGGCCGGTAAAGTGGGCAAACCGGTAAACAGGGGGCC
GGTAAACCGGGACCTCGACTGTACCGTAAATTAGCAGGAATGGCTGCTAT
TTCACCCCGTTGTAGACGTTTTAGGGTGTCTCCATGCTCCCTGTGTCGCT
TCTGTCTTTGCTTTGACCTGCTGCCCCGCACTTTAGGATAGGCAACACAC
CACAAAAAAATGCAAACAATCGCATGCAACCTCTCACCATACGGGGTGCC
GGCAAACACCTTCGCACAAGTGCCGGATGAAAGCAGCTTTTTCGCCAAAC
AGTCGGCTATATTCGTTCGCAGTGATACTTAAACTCCAAGAACACAATCC
CGTCGAAAATAACCCCGGGGTTAACACATCATGAACGATGTACCCCGGGG
GGCTTCGCACTTGTATCTTGTGGGGGGGGTTTGGTAGGCTGTTTTCACAC
AATGTTTCGTATTCTGATCCGATAATTATGCCCCCGAATTGGTGGCCTCG
CAAGAAGAAAGCGTTTTCGTAGACCCAGGGTTGACTTTGTTGTCATTTCC
TGAATTATCGACCCTCGTATGCAGACCCGGGGCGATATTTCTGCGCAACG
GTTTCGTTCCGTCCCCGCAGACCCCGCCAAAGGGGTGACGAAGATCCACT
TACATGTAGAAACGACTTCATACTTCCTGTCCCGTGCTCACTCGAAAACG
TACGATACTGCATGTGCCTTGATCATTTTTAACAACGGCAGTATTTAAAT
CGTATCAAGTCGCCTGTGCTCGCTGTTGCTGCCACTTGCCCCCTCAACTC
GGCTCAGGCGCGAGCGGCATGTACGACGATGGTAACGCTTCCGATGGCGC
CGACGATTCGCCTGCGGACCGAACGAAGAACACGAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig158:292607..295243-

>mRNA_P-littoralis_Contig158.80.1 ID=mRNA_P-littoralis_Contig158.80.1|Name=mRNA_P-littoralis_Contig158.80.1|organism=Pylaiella littoralis U1_48|type=CDS|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig158:292607..295243- (Pylaiella littoralis U1_48)
ATGACTTCTTCCGACCCTATCTATATCTCGATACTGTACCCCACGGGACC
CCCTTGCTCGGCTAGGCGGCGCAATGCCCCATCACCCTGCACACCAGTAC
AGTGGGGGTGTATGTGCATGCTTGTTGTGTGTGTGTCGTCATGGAGGCTG
ACGATGAGAGGGGACAGAGCAGAGGATCTGGTCGAACTCGACTTATCCCT
CAACCTGGCCGCGGATTTATGTGCAGTGCCTGTCGGTGGCGATTCTCATC
CCTCCGCGACGGAAGAGCCCATATTTCAACTTGCAAAGGGGGAGAGCCAG
CCCCTTCAGAGCCTATTGCACCTGCTGCGAGCGATGCCGCTAGGTCAAGC
GTGGGCGGTCAAGGATTGGGTGCTTCAGATGATCCGGGTGGCGAGGCCAT
AG
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