mRNA_P-littoralis_Contig158.38.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.38.1
Unique NamemRNA_P-littoralis_Contig158.38.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.38.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:117076..117582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size507
Hectar predicted targeting categorysignal anchor
Exons1
Cds size318
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789753.182272-UTR-P-littoralis_Contig158:117075..1172351680789753.182272-UTR-P-littoralis_Contig158:117075..117235Pylaiella littoralis U1_48UTRP-littoralis_Contig158 117076..117235 +
1680789753.204849-UTR-P-littoralis_Contig158:117553..1175821680789753.204849-UTR-P-littoralis_Contig158:117553..117582Pylaiella littoralis U1_48UTRP-littoralis_Contig158 117554..117582 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789753.194787-CDS-P-littoralis_Contig158:117235..1175531680789753.194787-CDS-P-littoralis_Contig158:117235..117553Pylaiella littoralis U1_48CDSP-littoralis_Contig158 117236..117553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.38.1prot_P-littoralis_Contig158.38.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 117236..117553 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.38.1

>prot_P-littoralis_Contig158.38.1 ID=prot_P-littoralis_Contig158.38.1|Name=mRNA_P-littoralis_Contig158.38.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=106bp
MEQKQLRTVVPVTGDMSATKESKSVSRQTSWRDIFSTDCVHFLFLSPFSA
IFAVFSFFFSLLPHCLLVCCPPSVFPPLFVYGLSSSVFRFWFLLSSCLSA
SLKLI*
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mRNA from alignment at P-littoralis_Contig158:117076..117582+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.38.1 ID=mRNA_P-littoralis_Contig158.38.1|Name=mRNA_P-littoralis_Contig158.38.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig158:117076..117582+ (Pylaiella littoralis U1_48)
CGGGGATAAACGAGAGGAGTACGGAGGGCCAAAAGGGCAGCGGGGTAGTG
GGGTTACAGTTGCGCGGCAGAAAAAGCTACCCGAAGCCAAGCTGCGGGAT
GGTAGGATTGGAGAGCCTGTAGGGCAGACATCGTGGAGCGGTGTGGCTGC
TGCCAAAGATATGGAGCAGAAACAACTGCGTACGGTGGTGCCAGTGACAG
GAGACATGAGTGCGACTAAGGAGAGTAAGAGCGTGAGCAGGCAGACCTCG
TGGCGAGACATTTTTTCGACCGATTGCGTGCATTTTCTTTTCCTCTCCCC
ATTTTCCGCTATTTTTGCAGTGTTCTCTTTTTTTTTCTCCCTGCTTCCTC
ATTGTTTGCTTGTCTGTTGCCCTCCTTCAGTCTTTCCCCCCCTTTTCGTC
TATGGTCTTTCGTCTTCCGTCTTTCGTTTTTGGTTTCTATTGTCTTCCTG
CCTTTCGGCTTCTCTTAAACTGATATAGTATATGCTGGACCCTGCGCTCT
GGTTTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig158:117076..117582+

>mRNA_P-littoralis_Contig158.38.1 ID=mRNA_P-littoralis_Contig158.38.1|Name=mRNA_P-littoralis_Contig158.38.1|organism=Pylaiella littoralis U1_48|type=CDS|length=318bp|location=Sequence derived from alignment at P-littoralis_Contig158:117076..117582+ (Pylaiella littoralis U1_48)
ATGGAGCAGAAACAACTGCGTACGGTGGTGCCAGTGACAGGAGACATGAG
TGCGACTAAGGAGAGTAAGAGCGTGAGCAGGCAGACCTCGTGGCGAGACA
TTTTTTCGACCGATTGCGTGCATTTTCTTTTCCTCTCCCCATTTTCCGCT
ATTTTTGCAGTGTTCTCTTTTTTTTTCTCCCTGCTTCCTCATTGTTTGCT
TGTCTGTTGCCCTCCTTCAGTCTTTCCCCCCCTTTTCGTCTATGGTCTTT
CGTCTTCCGTCTTTCGTTTTTGGTTTCTATTGTCTTCCTGCCTTTCGGCT
TCTCTTAAACTGATATAG
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