mRNA_P-littoralis_Contig158.126.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.126.1
Unique NamemRNA_P-littoralis_Contig158.126.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:470141..471156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size504
Hectar predicted targeting categoryother localisation
Exons2
Cds size501
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789753.0496967-CDS-P-littoralis_Contig158:470140..4702471680789753.0496967-CDS-P-littoralis_Contig158:470140..470247Pylaiella littoralis U1_48CDSP-littoralis_Contig158 470141..470247 +
1680789753.0597327-CDS-P-littoralis_Contig158:470760..4711541680789753.0597327-CDS-P-littoralis_Contig158:470760..471154Pylaiella littoralis U1_48CDSP-littoralis_Contig158 470761..471154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.126.1prot_P-littoralis_Contig158.126.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 470141..471154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.126.1

>prot_P-littoralis_Contig158.126.1 ID=prot_P-littoralis_Contig158.126.1|Name=mRNA_P-littoralis_Contig158.126.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=167bp
GVEGSFYQEASGTLWRTRFMDVALKFRSQWNAIWDELHNEDGTKRSGEQE
EDVMEKFHEAIWVLTQEEKRVQREEAAAATKKKTIKDAAKAAGIAARAAA
LVAGNTDAESQAAGALAQAAFTTAAAAEEASSLAEAAASKAALEAAAGAG
DSAASLAVAAAANAKKA
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mRNA from alignment at P-littoralis_Contig158:470141..471156+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.126.1 ID=mRNA_P-littoralis_Contig158.126.1|Name=mRNA_P-littoralis_Contig158.126.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1016bp|location=Sequence derived from alignment at P-littoralis_Contig158:470141..471156+ (Pylaiella littoralis U1_48)
GGCGTCGAGGGGAGCTTCTACCAGGAAGCGTCTGGGACGCTCTGGCGAAC
GAGGTTCATGGACGTTGCATTGAAATTCCGGAGCCAATGGAACGCCATTT
GGGACGAGTGAGTCATTTTGAGGTAGCGCCATCTACGTCGGGGTGTGGTG
AGGTACAATTTGCGCTTTGACTAATCGGCAACATTCTCATGTGGCGAAAC
CCATGTCGACCACAGACGGTGAACACCCGGGGATTTTTACGATTTGGTCT
CTGTCGGTGATACCCAGGGGCCTTTGCGATTTTGTATTTATTCGTGATCC
CCGGGGTCGGGGGCACAGGCAAATGGCACCATGGCCCGTAGCCTCCCAAC
GCCATACGACCTACAGTTGTCATCCACGAGTTGAGTAAATCCGTCGCGGT
GTTCCTTGGATGGGAGTGTAGCATATGTCTGTCGCAAAACATCGTACGCG
ACGATTGGGTCCCTTTTTAAGCTTGAATTAGTGGCTGTACCGTTCGACCT
AAAGTGCTGTTCATCACTCAATGCGTGCTCCCCTAGAAAGCCGCTATCGC
TAAGTTTAACACGACCGTATCACGACCTTGCTTGTTGCTGGACCTGAATT
ATCGCTGTGTTCCCATGCAGATTGCACAACGAGGACGGGACGAAGAGGTC
AGGGGAACAGGAGGAGGATGTCATGGAGAAATTTCATGAGGCAATCTGGG
TGTTGACCCAGGAAGAAAAGAGGGTCCAAAGGGAGGAGGCCGCTGCTGCA
ACTAAGAAAAAAACAATCAAAGACGCCGCGAAGGCCGCTGGGATTGCTGC
AAGGGCGGCAGCTTTGGTCGCGGGCAACACGGACGCGGAGTCCCAGGCGG
CCGGAGCCTTAGCGCAGGCGGCCTTCACGACGGCCGCAGCCGCGGAGGAG
GCGTCCTCTTTGGCGGAAGCTGCCGCTTCGAAGGCGGCCTTAGAGGCTGC
TGCTGGCGCTGGGGATTCGGCTGCTTCCTTGGCAGTCGCGGCTGCGGCCA
ACGCAAAAAAAGCCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig158:470141..471156+

>mRNA_P-littoralis_Contig158.126.1 ID=mRNA_P-littoralis_Contig158.126.1|Name=mRNA_P-littoralis_Contig158.126.1|organism=Pylaiella littoralis U1_48|type=CDS|length=501bp|location=Sequence derived from alignment at P-littoralis_Contig158:470141..471156+ (Pylaiella littoralis U1_48)
GGCGTCGAGGGGAGCTTCTACCAGGAAGCGTCTGGGACGCTCTGGCGAAC
GAGGTTCATGGACGTTGCATTGAAATTCCGGAGCCAATGGAACGCCATTT
GGGACGAATTGCACAACGAGGACGGGACGAAGAGGTCAGGGGAACAGGAG
GAGGATGTCATGGAGAAATTTCATGAGGCAATCTGGGTGTTGACCCAGGA
AGAAAAGAGGGTCCAAAGGGAGGAGGCCGCTGCTGCAACTAAGAAAAAAA
CAATCAAAGACGCCGCGAAGGCCGCTGGGATTGCTGCAAGGGCGGCAGCT
TTGGTCGCGGGCAACACGGACGCGGAGTCCCAGGCGGCCGGAGCCTTAGC
GCAGGCGGCCTTCACGACGGCCGCAGCCGCGGAGGAGGCGTCCTCTTTGG
CGGAAGCTGCCGCTTCGAAGGCGGCCTTAGAGGCTGCTGCTGGCGCTGGG
GATTCGGCTGCTTCCTTGGCAGTCGCGGCTGCGGCCAACGCAAAAAAAGC
C
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