mRNA_P-littoralis_Contig158.90.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.90.1
Unique NamemRNA_P-littoralis_Contig158.90.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:298770..300587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size596
Hectar predicted targeting categoryother localisation
Exons4
Cds size588
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789752.96039-UTR-P-littoralis_Contig158:298769..2987771680789752.96039-UTR-P-littoralis_Contig158:298769..298777Pylaiella littoralis U1_48UTRP-littoralis_Contig158 298770..298777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789752.9735594-CDS-P-littoralis_Contig158:298777..2988281680789752.9735594-CDS-P-littoralis_Contig158:298777..298828Pylaiella littoralis U1_48CDSP-littoralis_Contig158 298778..298828 +
1680789752.9834564-CDS-P-littoralis_Contig158:299158..2993881680789752.9834564-CDS-P-littoralis_Contig158:299158..299388Pylaiella littoralis U1_48CDSP-littoralis_Contig158 299159..299388 +
1680789752.994987-CDS-P-littoralis_Contig158:300252..3004321680789752.994987-CDS-P-littoralis_Contig158:300252..300432Pylaiella littoralis U1_48CDSP-littoralis_Contig158 300253..300432 +
1680789753.0047784-CDS-P-littoralis_Contig158:300460..3005871680789753.0047784-CDS-P-littoralis_Contig158:300460..300587Pylaiella littoralis U1_48CDSP-littoralis_Contig158 300461..300587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.90.1prot_P-littoralis_Contig158.90.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 298778..300587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.90.1

>prot_P-littoralis_Contig158.90.1 ID=prot_P-littoralis_Contig158.90.1|Name=mRNA_P-littoralis_Contig158.90.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=196bp
MRTIEVFGCAPSSFFNFVAVPMQAFMMNDLRCKLLAEVETLRNATRANDD
GGVDDGEDPVGFRAARVLVDLVDKWRVLPIGGGNTAADKVFTQRMLENVQ
VWAIDCLGDIPSPATITSAQDARRYLKPYLFKPRSDVDDDSSGSDDDSEP
QYFSRRRRRRRRRRIPDLTTTGPCSAWGLGVVTLTAQCADEREDG*
back to top

mRNA from alignment at P-littoralis_Contig158:298770..300587+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.90.1 ID=mRNA_P-littoralis_Contig158.90.1|Name=mRNA_P-littoralis_Contig158.90.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1818bp|location=Sequence derived from alignment at P-littoralis_Contig158:298770..300587+ (Pylaiella littoralis U1_48)
GCGTCCCGATGCGCACGATCGAGGTGTTTGGCTGCGCCCCATCCTCATTC
TTCAACTTCGTAAGTTTCTCGTTATCATTTGCTCGGTCTTGACGCGGAGG
CTGTTTCTGTATGAATATTGGTGATCCCGTTGCAAGGAAACACGTGTTGA
CCCCCCCCCGCGCGCCCTCCGCCATGAACAAGTACTTTAGAACCCACAAA
TCCCACTCGTAGTTGGCTTTTTGAGGTGGCGTTGCCATGGACTTGTCAAG
TCTTGCGTGTCGAGGGTGTCCAACTAGACATTATCGATCCTCAATATCAC
CGAGCAATCCATGAAGCACAACAACTAACAAATTTCGTTTGTGTGTATTT
TTTTTATTCTTCGTATTGCACTTTCTTGTTTGGAGCCAGGTGGCTGTACC
CATGCAGGCGTTTATGATGAACGACCTGAGGTGCAAGCTGCTCGCCGAAG
TGGAGACACTTCGCAACGCGACCCGCGCCAACGACGATGGTGGTGTGGAT
GATGGGGAGGACCCCGTAGGGTTCCGTGCGGCACGGGTGCTCGTGGATCT
GGTGGACAAGTGGAGGGTGCTCCCTATCGGCGGTGGAAACACCGCCGCCG
ACAAGGTGTTCACCCAGAGGTGCGTGCCCGAATAGAACCCCATCGTGTAC
TACCTCGGCGAGCGCTCTGTAGTGTCATGTGTACACGTGCGGTAGGTGCA
TGTATTTTCTGGGGTGGCACCTAACCTGTACCTGGTATATCCACACCTCA
GATGAGCTGTAGCGGTACATGCGTGTTTGTAGATATTTTTTTCGGTTATC
ACATGTCAAATCAACCCGACGTTGTCCTGGCTTGATGTTTGTGTGTGTGT
GCTTTAAATCATATTTCATAGAGCAAAGGAGGACACCTCACACGCACGAC
ACATCCACTTGTGGCTGCTGTGGAAGAGTTGACACAATTTTTTGTGTGTC
TTGCTTTTGACTATTGGCTCTTCTGCAGCAGCTACAGCTAAAGCTGGACA
TGGCAGGGAGCAATCGACGTGCTTGTGTATGATGTGGTGTGTTGCCTCTT
CTTGTAGCACAGCAGCAGCTAGGTATGTTTGTTACAGCAGGTCGCATTTC
CGTCACGTATTCTGGCACCGTGCACTTTCTACTGCGACCGCTGGAAGACT
CAGTGCCGGCTCTTCTACAACAGCAGCAGTTGTGTATATGTTGCGTGTGC
ACGTTTGTATTCTGTGTGCGGGAGGCCATCGCCACCCAGCCGAGTGCGTG
ATGACGCTTGGCCCCAAAAACGTATTTGCTTCCTGTGCAGTTTTTTCCCT
TTCATCAATAGGATGGTTGCCAACTATGACATCCTTTTCGGCAAGCACTC
CACTTGGAGTTGTACAGGAATATGTATATTTATATTTACGCTTGTTCCCG
TTGAGGTTATTGAAAAGCTGATTAATGCTGGCTCGCTGTTGACAACACTG
TCTTTCGTCCATGGGATCTGACCAAACGCGCAGGATGCTAGAAAATGTTC
AGGTTTGGGCGATCGACTGCCTGGGTGACATCCCCTCCCCGGCGACCATC
ACCTCCGCGCAAGACGCGCGCAGGTACCTCAAGCCGTACCTCTTCAAGCC
TCGCTCGGATGTGGACGACGACTCGTCGGGCAGCGACGACGACTCGGAGC
CGCAGTACTTTTCGTACGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGATTCCGGATCTGACGACTACGGGCCCAT
GTTCGGCATGGGGGCTGGGAGTGGTGACTCTGACGGCACAGTGTGCGGAT
GAACGAGAGGATGGGTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig158:298770..300587+

>mRNA_P-littoralis_Contig158.90.1 ID=mRNA_P-littoralis_Contig158.90.1|Name=mRNA_P-littoralis_Contig158.90.1|organism=Pylaiella littoralis U1_48|type=CDS|length=588bp|location=Sequence derived from alignment at P-littoralis_Contig158:298770..300587+ (Pylaiella littoralis U1_48)
ATGCGCACGATCGAGGTGTTTGGCTGCGCCCCATCCTCATTCTTCAACTT
CGTGGCTGTACCCATGCAGGCGTTTATGATGAACGACCTGAGGTGCAAGC
TGCTCGCCGAAGTGGAGACACTTCGCAACGCGACCCGCGCCAACGACGAT
GGTGGTGTGGATGATGGGGAGGACCCCGTAGGGTTCCGTGCGGCACGGGT
GCTCGTGGATCTGGTGGACAAGTGGAGGGTGCTCCCTATCGGCGGTGGAA
ACACCGCCGCCGACAAGGTGTTCACCCAGAGGATGCTAGAAAATGTTCAG
GTTTGGGCGATCGACTGCCTGGGTGACATCCCCTCCCCGGCGACCATCAC
CTCCGCGCAAGACGCGCGCAGGTACCTCAAGCCGTACCTCTTCAAGCCTC
GCTCGGATGTGGACGACGACTCGTCGGGCAGCGACGACGACTCGGAGCCG
CAGTACTTTTCGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATTCCGGA
TCTGACGACTACGGGCCCATGTTCGGCATGGGGGCTGGGAGTGGTGACTC
TGACGGCACAGTGTGCGGATGAACGAGAGGATGGGTGA
back to top