mRNA_P-littoralis_Contig158.85.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.85.1
Unique NamemRNA_P-littoralis_Contig158.85.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.85.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:296916..297842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size609
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789752.8850071-UTR-P-littoralis_Contig158:296915..2969411680789752.8850071-UTR-P-littoralis_Contig158:296915..296941Pylaiella littoralis U1_48UTRP-littoralis_Contig158 296916..296941 +
1680789752.9256446-UTR-P-littoralis_Contig158:297610..2978421680789752.9256446-UTR-P-littoralis_Contig158:297610..297842Pylaiella littoralis U1_48UTRP-littoralis_Contig158 297611..297842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789752.8974383-CDS-P-littoralis_Contig158:296941..2970521680789752.8974383-CDS-P-littoralis_Contig158:296941..297052Pylaiella littoralis U1_48CDSP-littoralis_Contig158 296942..297052 +
1680789752.9087546-CDS-P-littoralis_Contig158:297370..2976101680789752.9087546-CDS-P-littoralis_Contig158:297370..297610Pylaiella littoralis U1_48CDSP-littoralis_Contig158 297371..297610 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.85.1prot_P-littoralis_Contig158.85.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 296942..297610 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.85.1

>prot_P-littoralis_Contig158.85.1 ID=prot_P-littoralis_Contig158.85.1|Name=mRNA_P-littoralis_Contig158.85.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
MPNEDVAAYFMKEVGQTWSPALKTLIAVSLLKESGLPIQVGSSAPRSGTT
KAVAGSRAVYSQACHLVLPFLHGITSHPAWKTPAIVDQHAVVKAAYLLYK
EGGGELNKAQFSGKNS*
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mRNA from alignment at P-littoralis_Contig158:296916..297842+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.85.1 ID=mRNA_P-littoralis_Contig158.85.1|Name=mRNA_P-littoralis_Contig158.85.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=927bp|location=Sequence derived from alignment at P-littoralis_Contig158:296916..297842+ (Pylaiella littoralis U1_48)
AGGACATTGCACGCAAGTCCAAGACCATGCCGAATGAGGACGTCGCCGCG
TACTTCATGAAAGAAGTGGGGCAGACGTGGTCTCCGGCGCTCAAGACGTT
GATCGCCGTCAGCCTCCTCAAGGAGTCAGGGCTACCTGTAAGTGCTGGTG
TTGCTCCAGCGGTTTTCACTCAAGCGCCCCCCCCCCCGCCAAACGCGTGT
CACTCAAGTTATTATTTCAACCAAATGAGTTACCATCGTGCTTAAGAATT
ATGAACTGGTCGGCAAGCAGCGGAAGATATGATGCCGTGTGTAGCGAGAT
GGCGTGTATCGTTCTTTCATGGCTTTAATGGTACCCCAATCCAGGCGATG
CTGGGCCGTTCCAGCTCGGTACATGTATTTACGGTCATGCGCTCCCCCGG
CTATAACCTTACCCCTATGCTTGCTATTGTCATTTTGTTTTTCGCACTGC
GACAGATCCAGGTAGGTTCTTCTGCCCCCCGCTCTGGCACCACAAAGGCT
GTGGCGGGGTCCAGGGCTGTTTACAGCCAAGCCTGCCACCTGGTACTGCC
GTTCTTGCATGGGATTACGTCCCACCCGGCATGGAAGACCCCTGCCATTG
TCGATCAACATGCTGTCGTAAAGGCAGCATACCTCCTCTACAAGGAGGGC
GGTGGCGAGCTCAACAAAGCTCAATTTTCCGGTAAGAACTCTTAATAACC
TTTTAGAGCAACATGACCTGCTTTGTGCAGCCATGGATTGCACTTATTCT
CAACGCTTGCGGTGAAGTTTGGTGCTTCCCGGGAAGACGTGTGGCACATC
CTCGATAAGGAGTGTGTAGCAAGGCCTACACGACGAGTAGACAAGCTTTG
CTTTCGCCCCCCCCAGCACACACACGCATTTCAAGAAACTTTGGTGGATT
TCACAGAGGGTGTTTGGGTGAACTCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig158:296916..297842+

>mRNA_P-littoralis_Contig158.85.1 ID=mRNA_P-littoralis_Contig158.85.1|Name=mRNA_P-littoralis_Contig158.85.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig158:296916..297842+ (Pylaiella littoralis U1_48)
ATGCCGAATGAGGACGTCGCCGCGTACTTCATGAAAGAAGTGGGGCAGAC
GTGGTCTCCGGCGCTCAAGACGTTGATCGCCGTCAGCCTCCTCAAGGAGT
CAGGGCTACCTATCCAGGTAGGTTCTTCTGCCCCCCGCTCTGGCACCACA
AAGGCTGTGGCGGGGTCCAGGGCTGTTTACAGCCAAGCCTGCCACCTGGT
ACTGCCGTTCTTGCATGGGATTACGTCCCACCCGGCATGGAAGACCCCTG
CCATTGTCGATCAACATGCTGTCGTAAAGGCAGCATACCTCCTCTACAAG
GAGGGCGGTGGCGAGCTCAACAAAGCTCAATTTTCCGGTAAGAACTCTTA
A
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