mRNA_P-littoralis_Contig158.71.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.71.2
Unique NamemRNA_P-littoralis_Contig158.71.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.71.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:285116..285798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size505
Hectar predicted targeting categoryother localisation
Exons3
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789752.7011757-UTR-P-littoralis_Contig158:285115..2852831680789752.7011757-UTR-P-littoralis_Contig158:285115..285283Pylaiella littoralis U1_48UTRP-littoralis_Contig158 285116..285283 -
1680789752.7520754-UTR-P-littoralis_Contig158:285761..2857981680789752.7520754-UTR-P-littoralis_Contig158:285761..285798Pylaiella littoralis U1_48UTRP-littoralis_Contig158 285762..285798 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789752.7161553-CDS-P-littoralis_Contig158:285283..2853221680789752.7161553-CDS-P-littoralis_Contig158:285283..285322Pylaiella littoralis U1_48CDSP-littoralis_Contig158 285284..285322 -
1680789752.7292135-CDS-P-littoralis_Contig158:285372..2855441680789752.7292135-CDS-P-littoralis_Contig158:285372..285544Pylaiella littoralis U1_48CDSP-littoralis_Contig158 285373..285544 -
1680789752.7380595-CDS-P-littoralis_Contig158:285672..2857611680789752.7380595-CDS-P-littoralis_Contig158:285672..285761Pylaiella littoralis U1_48CDSP-littoralis_Contig158 285673..285761 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.71.2prot_P-littoralis_Contig158.71.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 285284..285761 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.71.2

>prot_P-littoralis_Contig158.71.2 ID=prot_P-littoralis_Contig158.71.2|Name=mRNA_P-littoralis_Contig158.71.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MVDWTYGVNDWRELWAWCSLKACCLTPRRIMRFFQYFFQIYADHRNTRKY
YVLNFFVFLGVSGMESRGCTNRATLTNSSKNASFFLKLQIYAHHRNTRK*
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mRNA from alignment at P-littoralis_Contig158:285116..285798-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.71.2 ID=mRNA_P-littoralis_Contig158.71.2|Name=mRNA_P-littoralis_Contig158.71.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=683bp|location=Sequence derived from alignment at P-littoralis_Contig158:285116..285798- (Pylaiella littoralis U1_48)
CATCATCGCGGTGGGTTCAGTGTTATTAGTGGATGAGATGGTTGACTGGA
CTTACGGTGTGAACGACTGGCGTGAGCTTTGGGCTTGGTGTTCGCTGAAA
GCGTGTTGCCTAACTCCTCGAAGAATGCGAGTTTTGCAATAATTCTTCCA
GATTTACGTCGATGACAGAAATATAAAAAAATAATATGTCTTGTTTTTTT
GTGTGTGTGGCGGGAGGGGGGGTGCACTATATCGGGGACCCTAACTCCTC
GAAGAATGCGATTTTTTCAATACTTTTTCCAGATTTACGCCGATCACAGA
AATACAAGAAAATATTATGTCTTGAACTTTTTTGTGTTTTTGGGTGTGTC
GGGTATGGAGAGCAGGGGGTGCACTAATAGGGCGACCCTAACTAACTCCT
CGAAGAATGCGAGTTTTTTTTTAAAAGTTACAGATTTACGCCGATCACAG
AAATACAAGAAATTTTTTAAAACAAGTTACAGATTTACGCCCATCACAGA
AATACAAGAAAATAATTTGTCTTGAACTTTTTTGTGTTTTTGGGTGTGTC
GGGTATGGAGAGCAGGGGTGCACTAATAGGGCGACCCTAACTAACTCCTC
GGAGAATGCGAGTTTTATAAAAAAAGTTACAGATTTACGCCGATCACAGA
AATACAAGAAAATAATATGTCTTGAACTTTTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig158:285116..285798-

>mRNA_P-littoralis_Contig158.71.2 ID=mRNA_P-littoralis_Contig158.71.2|Name=mRNA_P-littoralis_Contig158.71.2|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig158:285116..285798- (Pylaiella littoralis U1_48)
ATGGTTGACTGGACTTACGGTGTGAACGACTGGCGTGAGCTTTGGGCTTG
GTGTTCGCTGAAAGCGTGTTGCCTAACTCCTCGAAGAATAATGCGATTTT
TTCAATACTTTTTCCAGATTTACGCCGATCACAGAAATACAAGAAAATAT
TATGTCTTGAACTTTTTTGTGTTTTTGGGTGTGTCGGGTATGGAGAGCAG
GGGGTGCACTAATAGGGCGACCCTAACTAACTCCTCGAAGAATGCGAGTT
TTTTTTTAAAATTACAGATTTACGCCCATCACAGAAATACAAGAAAATAA
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