mRNA_P-littoralis_Contig158.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig158.10.1
Unique NamemRNA_P-littoralis_Contig158.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig158.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig158contigP-littoralis_Contig158:29439..33130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size395
Hectar predicted targeting categoryother localisation
Exons3
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789752.359651-UTR-P-littoralis_Contig158:29438..294511680789752.359651-UTR-P-littoralis_Contig158:29438..29451Pylaiella littoralis U1_48UTRP-littoralis_Contig158 29439..29451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789752.3758647-CDS-P-littoralis_Contig158:29451..295531680789752.3758647-CDS-P-littoralis_Contig158:29451..29553Pylaiella littoralis U1_48CDSP-littoralis_Contig158 29452..29553 +
1680789752.3892248-CDS-P-littoralis_Contig158:29589..296371680789752.3892248-CDS-P-littoralis_Contig158:29589..29637Pylaiella littoralis U1_48CDSP-littoralis_Contig158 29590..29637 +
1680789752.4035766-CDS-P-littoralis_Contig158:32899..331301680789752.4035766-CDS-P-littoralis_Contig158:32899..33130Pylaiella littoralis U1_48CDSP-littoralis_Contig158 32900..33130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig158.10.1prot_P-littoralis_Contig158.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig158 29452..33130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig158.10.1

>prot_P-littoralis_Contig158.10.1 ID=prot_P-littoralis_Contig158.10.1|Name=mRNA_P-littoralis_Contig158.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=127bp
MRSPGLLKEDLAGLNRRIQTVLNKKGAGIKDGLTKSADPLAGEKANPIPP
GGRVPFSAREAAPDIVANKLMKGSRFEDGGGRKFVANKIAGNGDCLFNSV
AFAGYGPSCTSMRKVLEKALPLRAAVC
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mRNA from alignment at P-littoralis_Contig158:29439..33130+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig158.10.1 ID=mRNA_P-littoralis_Contig158.10.1|Name=mRNA_P-littoralis_Contig158.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3692bp|location=Sequence derived from alignment at P-littoralis_Contig158:29439..33130+ (Pylaiella littoralis U1_48)
CTCTCCTTGCACAATGCGATCACCGGGGCTGCTAAAGGAGGACCTGGCTG
GACTCAACCGCAGAATCCAGACGGTGCTCAACAAGAAGGGAGCAGGGATC
AAAGATGGGCTCACAGCCCAAAATTGCGCCCGGTTGGTGAGGCATGCCCA
GAAATCGGCCGATCCCCTGGCCGGGGAAAAAGCAAACCCCATCCCCCCGG
TGAGTCGTGTTGGACGTATCATGTCATACAGAAAGGCCTCCGTACATACA
AACGAATCCGCATTATTCTTCCCTGCTTTCGAAGGAGGTTTGTCCTACCG
TTGTGCAAGTTGTTGATACGGATGGTGTGCACAAAGCCAATAGGATCGGC
CGTTTATATTAAAGCAACTTTAATCGGAATCGAAAATATTAGTGGGTAGC
CAAACTTACTCCCGCACATGCGGCGCATCAAGCAGATTTTTTATTTCGCC
CTTATTATTCCGGAAGCTGAAGGAAAGGGTGGAATCGAAGAAGTCCGAGT
TTGTAGTCTAAAATGCAGCTCAAAAATCGATTTGACCTAGAACACGAGCA
GAGAGGTTTTTGCTGTGCTTTCTGGGAGTACATAGGTGCACATCGATGTG
TCTTTGCGTAGTCGGTCACAGCCCAACTTGTATCCCCCTGTACGTATGTG
TGACCTCGGCGAAAGCTGGTGTTCCGTAGATTACTAGAAAGGGGAAAGGA
ATTGAGAAGCAGTGTGCGTTGGAGGGCCGCTTCTCAAATATCTGCCTTAC
GCCCTGTGCGTTGCTGTTTGTTGGCGTATGATATGGCTGCTGCTTCACAG
CAGTGCTGCTACTGCAGAACACAGCTGGTGGTGTGCTGGTGTGCGTGCGC
GCCAGCGCAACGAACACAAAAAGCCTCTCATCATTTTTCACAAAAAAGGG
ACCCTATTAATAACTCGCCTCCGACAAGATAGCTGTGCGCACAGGACACG
GGCTGCGGTGAACCCAGCAGCAGTGGGTAGATGCTATTTACCTCATCAGT
TGAAGCCCTTGGTCGTAACGATCTGTGATGAACTGGTGCCAAAGTGTTGC
AAAATGTGGCCAATATCTCGGACACACACACAGACAGACACACAGACACC
ATAAACCTCCAAAATTAAACAAAGGCACCCCTGTCTCCGCTTTTTGTTTT
AGTAGTATTCGCACATACACTCACACCTGCACATCACGACAAGTCGGTAT
GAATTCCAAGGAGTTGGACACCGAAGTTACACTTCGCTGCGCTCGTGGAC
TCCTTCTCAATACAAATCTCTTCGTTCGAGCGTATTCTGATGAGAATCCG
GAGAGCACCACTCAAGTGTGCAGAAGTATGCAGACAGCAGTAGTTGTTGC
TCTCTACAGTACTCTCATGCCGGTGGTGGTGCTGTGCATTTCGATTACAA
CATCGGTATGATCTTACTCACGATACCACAACACAACTTGTAGCTGCCTG
CTTTACACAAACGGTACCTCCACACGAAGATAGTATCGCCAATTGCAAAG
AAGGAAAACTGTCAGAGCGGAGTCTGAGAAGCTGAGGAGCTCATCCGAGT
TCAATGTCGTCGCCCTGCATGATATGTAGGTATGTACAACGGCAGAAATC
ATGGGACTCTGAAAAGGGTGAGGACTACCAACGCGCCTGAGTTAGGCCGA
TGTAGGGCACTATCGTGCATTACGTTAGAGGCACGGTAGCTCCCGCACTA
ACTAGCCTTACAATTGTCACAGCATACGTTTTACGACCGTCTATCCTCTG
ACTTGCTGGCCGTGCCTCTTCCTATTCATGTATTGTACCTCCGCCTTGTT
AGATTTTAGATGAACGCAGCCGTAGCTGCGTGGACCCAACCCCATTTCTC
AAACTGAAGCAAGCTGTGTTGTGCCGTTCCTGAAAGCAGCCTGGAAAAAC
ATTGGTCCTCAAAAACACGAAGCATCGAATGCAGCTGCGGAGGCCGCTGT
GTTCGTGTGTTTATATCCCATCGGTTTTGGTCACCAGTCTCCACCTTCCT
ACATACGTTCGGCTTACCAGCCGCGGTTGGTCTCACACAAGATGATGCAT
TTCAGGAATTCGAGTTTGTTCCAAGAGCTCCTTACCCAATTTAACCCAAC
GCTAAATCCGACGCAACCCCATCGGAATCTGCGGTGGAGGAGTGGTTCAT
CGCGGAATACTCAAACTGAGCATGCCGATCAAGCAACGCACACACATTCA
GTTCCAACTGTTGTCGACAGCACTTTGCCACCACATACTCCCAGCCTTCC
ATCACAAGACCCATACAACCGCCGCGTGTCTTCGCACGTGGTGTGGTGTG
TGGCAGAGCTGCTTGTGGTTGTTGGTCGCTTTTGTGTTGATCTTGCGCCA
AAAGAAAAAACGTTACCTGCTGTTAAGAAGGGCTAgGGGGCCTGCTAACA
TAGCGAGGAATTCCACAAAATGATGGCATGACGTGTCGTTTATATTTACA
AGCCAGCATCCTAGACAACGGGGCCTTGTGAGGCTGAGTGCCCAAGGTCG
TCTGCGGAGCTGTACTTGATCCTGCCCAACGTTATGGGCACACAACAGAG
GGCAGCGAGTTTGCTCATATTTCGGCGTTGATCGCCAAGTTTCATCTGAC
CCATGAGGGAAACCAGGGTGTGTACCTTGGTGGCTGTACAACCCAACAAA
ATGTGTGAAATTGGTTGCAGCACTACAGAGTTGACGATATGGGCTCTAAA
ACGTGGCCTAAAAGCGCCCCAAACCATGATGAACTGCATTTGTTTACTAG
GTTGAGCATTCTGAAACAGAACAACTCGCAATGTTCCTTGGAATCAGCAA
TACATCGATGACGATCAAAAAATGCCTGAAGGCGACCCAAACCACTCTGG
ACTCTGTGGTTTAATAGGTTGAAATTTCCTTGAAAGTTTTGAAGCAAGGA
CAACATGTCTACCTCGAAAAATGTCGCCAACATTTCATTGTTTCGTGCTC
CATAACAACTTTTGATCAAAGTTGTGCACTCGAAGTATTGAATTTCCGAA
ACCGGTTGAAACTCGGAGGTTGTGTAGCTTGGTCGATGCACTACCCGACA
AACGTAGGTAGAGTTTGGGATCAGCACAACAGCTCGTCAACCAGCAGATT
GATTTGCATGTGTCACAGGAAAATTTACGTTGTTCGCTCCATGTAATGAT
AAAATTGGATAAAATTTGTCTTGTCGCTTTAAATAAGAAGGCGATTTCAT
ATTGTTTCCTATAGGCAGCAGCACGTGTCTCCGTTGCCGAGGATGGCATA
GTTTAATGAACGTGCGTGGTTAGGGGCTCACTGTCACGAGGCACCGCGGA
CAGACAGACTGGCGGAGGACCTAAAGCTTAAAACCACGTGCGCATGTGTT
CTCCACGAGCCATACAAACTCCAAAACGTGTGTGACTCGATGATTCATAA
CTGCAGTTCTTCGTACGTCGCCTACCGTGCGCACGGGTGCGTACTACTGT
AAACCTGCCAGGGCGGGAGAGTCCCATTCTCCGCGCGCGAGGCGGCACCT
GATATAGTGGCGAACAAGCTAATGAAGGGATCGAGGTTCGAGGATGGCGG
AGGTCGCAAATTTGTTGCCAACAAAATCGCGGGTAACGGCGATTGCTTGT
TCAACTCGGTTGCGTTCGCGGGCTACGGCCCATCCTGCACCAGCATGCGC
AAGGTGCTAGAAAAGGCACTACCTCTTCGGGCAGCTGTGTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig158:29439..33130+

>mRNA_P-littoralis_Contig158.10.1 ID=mRNA_P-littoralis_Contig158.10.1|Name=mRNA_P-littoralis_Contig158.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=381bp|location=Sequence derived from alignment at P-littoralis_Contig158:29439..33130+ (Pylaiella littoralis U1_48)
ATGCGATCACCGGGGCTGCTAAAGGAGGACCTGGCTGGACTCAACCGCAG
AATCCAGACGGTGCTCAACAAGAAGGGAGCAGGGATCAAAGATGGGCTCA
CAAAATCGGCCGATCCCCTGGCCGGGGAAAAAGCAAACCCCATCCCCCCG
GGCGGGAGAGTCCCATTCTCCGCGCGCGAGGCGGCACCTGATATAGTGGC
GAACAAGCTAATGAAGGGATCGAGGTTCGAGGATGGCGGAGGTCGCAAAT
TTGTTGCCAACAAAATCGCGGGTAACGGCGATTGCTTGTTCAACTCGGTT
GCGTTCGCGGGCTACGGCCCATCCTGCACCAGCATGCGCAAGGTGCTAGA
AAAGGCACTACCTCTTCGGGCAGCTGTGTGC
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