mRNA_P-littoralis_Contig157.86.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig157.86.1
Unique NamemRNA_P-littoralis_Contig157.86.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig157.86.1 vs. uniprot
Match: A0A6H5JIE2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIE2_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.030e-13
Identity = 63/154 (40.91%), Postives = 89/154 (57.79%), Query Frame = 3 
Query:   12 ISALQALPFASCATLETQQTGLRRSTRSRARSVRLRSPGEPPLALPDLHEC-SGRPSYSPTEVDSMVA--TPRTTPSSVISPEDDDDVQQVLSAGGDV-APSSAEVVSTATMPAFREALKLLSDPAALVRRQQDDPHLGQVCKDLSNEENRAGG 461
            +SAL+ALPFA+CA ++ ++   RRS R+R  SVRL    +  L L  + E    R +  PT V+S     +P T P S   P  DD + +VL+A G+V A SS++ +  A+  A     ++L+ P+ L  RQQDD HLGQV K LSN  + A G
Sbjct:  408 LSALRALPFAACAAVDPERDAARRSGRTRTPSVRLPPIDDAQLLLTSVLEAIPDREAIGPTTVESFAPAPSPSTLPPSPGRPGHDD-IGEVLAARGEVPASSSSQTIGRAS--AIDLTARILTKPSELAHRQQDDTHLGQVRKVLSNGVDLARG 558
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BLAST of mRNA_P-littoralis_Contig157.86.1 vs. uniprot
Match: A0A6H5KFK7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFK7_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 9.870e-11
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 2 
Query:  458 GDKSHGYCLDDSGVLRV-EREGKKLPVIPLSMVPDVIALVHLFHGHAGVGATLHLVRRYFFWSHMARD 658
            G +   Y L    V+R  + +G+KLP IP++MV D+IALVH  HGHAGVGATL L+R +F W  M  D
Sbjct:  800 GSERDRYSLGTDDVIRYNDGKGRKLPAIPVAMVADIIALVHTLHGHAGVGATLSLLRDHFHWPTMTND 867
[Close]
BLAST of mRNA_P-littoralis_Contig157.86.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.060e-10
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 2 
Query:  458 GDKSHGYCLDDSGVLRV-EREGKKLPVIPLSMVPDVIALVHLFHGHAGVGATLHLVRRYFFWSHMARD 658
            G +   Y L    V+R  + +G+KLP IP++MV D+IALVH  HGHAGVGATL L+R +F W  M  D
Sbjct: 1322 GSERDRYSLGTDDVIRYNDGKGRKLPAIPVAMVADIIALVHTLHGHAGVGATLSLLRDHFHWPTMTND 1389
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig157.86.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JIE2_9PHAE2.030e-1340.91Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KFK7_9PHAE9.870e-1151.47Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEH2_9PHAE1.060e-1051.47RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig157contigP-littoralis_Contig157:420617..421274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size658
Hectar predicted targeting categoryother localisation
Exons1
Cds size594
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789751.2700486-UTR-P-littoralis_Contig157:420616..4206241680789751.2700486-UTR-P-littoralis_Contig157:420616..420624Pylaiella littoralis U1_48UTRP-littoralis_Contig157 420617..420624 +
1680789751.298573-UTR-P-littoralis_Contig157:421218..4212741680789751.298573-UTR-P-littoralis_Contig157:421218..421274Pylaiella littoralis U1_48UTRP-littoralis_Contig157 421219..421274 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789751.2805607-CDS-P-littoralis_Contig157:420624..4212181680789751.2805607-CDS-P-littoralis_Contig157:420624..421218Pylaiella littoralis U1_48CDSP-littoralis_Contig157 420625..421218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig157.86.1prot_P-littoralis_Contig157.86.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig157 420625..421218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig157.86.1

>prot_P-littoralis_Contig157.86.1 ID=prot_P-littoralis_Contig157.86.1|Name=mRNA_P-littoralis_Contig157.86.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=198bp
MISALQALPFASCATLETQQTGLRRSTRSRARSVRLRSPGEPPLALPDLH
ECSGRPSYSPTEVDSMVATPRTTPSSVISPEDDDDVQQVLSAGGDVAPSS
AEVVSTATMPAFREALKLLSDPAALVRRQQDDPHLGQVCKDLSNEENRAG
GIRVTVIAWTTVECCGWNEKERNCQSFHCRWCPMLLPWCTCFTATQE*
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mRNA from alignment at P-littoralis_Contig157:420617..421274+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig157.86.1 ID=mRNA_P-littoralis_Contig157.86.1|Name=mRNA_P-littoralis_Contig157.86.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=658bp|location=Sequence derived from alignment at P-littoralis_Contig157:420617..421274+ (Pylaiella littoralis U1_48)
ATGCTCACATGATCTCTGCCTTGCAAGCCCTGCCGTTTGCCTCTTGTGCG
ACGTTAGAGACCCAGCAAACAGGTCTCCGGCGATCGACGAGGAGTCGTGC
TCGTTCTGTCCGTCTCCGGTCTCCCGGCGAGCCCCCGCTGGCCCTCCCGG
ACCTACACGAGTGTTCCGGCCGTCCGTCTTATTCCCCGACCGAGGTGGAT
TCCATGGTTGCGACGCCTCGCACGACCCCGTCATCGGTGATCTCCCCGGA
GGACGACGACGACGTGCAGCAAGTGCTCTCGGCAGGGGGGGACGTGGCGC
CGTCGTCTGCAGAGGTCGTCAGTACAGCTACGATGCCGGCTTTCCGAGAG
GCGCTGAAACTCCTGTCCGACCCAGCAGCACTGGTGCGGAGGCAGCAGGA
CGACCCGCACTTGGGCCAGGTTTGCAAAGACTTGTCGAATGAGGAGAACA
GAGCTGGGGGGATAAGAGTCACGGTTATTGCCTGGACGACAGTGGAGTGT
TGCGGGTGGAACGAGAAGGAAAGAAATTGCCAGTCATTCCACTGTCGATG
GTGCCCGATGTTATTGCCTTGGTGCACCTGTTTCACGGCCACGCAGGAGT
AGGGGCCACCTTACATCTTGTGAGGAGGTACTTTTTCTGGTCGCACATGG
CTCGGGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig157:420617..421274+

>mRNA_P-littoralis_Contig157.86.1 ID=mRNA_P-littoralis_Contig157.86.1|Name=mRNA_P-littoralis_Contig157.86.1|organism=Pylaiella littoralis U1_48|type=CDS|length=594bp|location=Sequence derived from alignment at P-littoralis_Contig157:420617..421274+ (Pylaiella littoralis U1_48)
ATGATCTCTGCCTTGCAAGCCCTGCCGTTTGCCTCTTGTGCGACGTTAGA
GACCCAGCAAACAGGTCTCCGGCGATCGACGAGGAGTCGTGCTCGTTCTG
TCCGTCTCCGGTCTCCCGGCGAGCCCCCGCTGGCCCTCCCGGACCTACAC
GAGTGTTCCGGCCGTCCGTCTTATTCCCCGACCGAGGTGGATTCCATGGT
TGCGACGCCTCGCACGACCCCGTCATCGGTGATCTCCCCGGAGGACGACG
ACGACGTGCAGCAAGTGCTCTCGGCAGGGGGGGACGTGGCGCCGTCGTCT
GCAGAGGTCGTCAGTACAGCTACGATGCCGGCTTTCCGAGAGGCGCTGAA
ACTCCTGTCCGACCCAGCAGCACTGGTGCGGAGGCAGCAGGACGACCCGC
ACTTGGGCCAGGTTTGCAAAGACTTGTCGAATGAGGAGAACAGAGCTGGG
GGGATAAGAGTCACGGTTATTGCCTGGACGACAGTGGAGTGTTGCGGGTG
GAACGAGAAGGAAAGAAATTGCCAGTCATTCCACTGTCGATGGTGCCCGA
TGTTATTGCCTTGGTGCACCTGTTTCACGGCCACGCAGGAGTAG
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