mRNA_P-littoralis_Contig157.22.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig157.22.1
Unique NamemRNA_P-littoralis_Contig157.22.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig157.22.1 vs. uniprot
Match: D8LG71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG71_ECTSI)

HSP 1 Score: 423 bits (1088), Expect = 3.590e-137
Identity = 255/466 (54.72%), Postives = 294/466 (63.09%), Query Frame = 3 
Query:  123 MGKINLVALLGITVALVGTLAPAAAQTCTGDIRGVQSTSEDICCTLECGVCGGEGCNPGNSSTLTAFDCCTAEIESTGVMCIDTQAAPCILSTPAASNDSTCENGQTGVQDPDTDVCCPLDCGDFCGGGGCGTIPGVDGSQCCASAILDSGILCGDGVQPPCAIVTLAENDTTCSNGLPGVES-DNLICCVAACGTCGGQNCGDVAGFTGDDCCIENIEANNELCSDKGFAPCVVDPPEVTPSTCPNGLDGVFDGTNVCCAEACNGVCGGTGCGDIAGTAGASDCCSADILASNVTCTDAAPCVMADGTFTPAPSAXXXXXXXXXA-----------------------GSRDMAFTXXXXXXXXXLDLTSVXXXAPS-----GMTA-------------SAXXXXXXXXXXXXXXXXXXXGSTMAPTTS-------GSASVSAGSVVTFAAMVGGMFAVVAAARN 1373
            M K+N  ALLG+ +AL G++    AQTC G I GV+STS D+CCTLECG CGG GC P N+S+LTA DCC  EI  +GVMC DT  APCILST AAS DS C+NGQTGVQDPDTDVCCPL+CG+ CGG GCGTIPGVD SQCCAS I  SGI+CGDG++ PC  V +A  D+ CSNG PG+E+ D  +CC  AC  CGG  CG+VAG TG DCC   I AN+ELCS+KG APCVVDPPEVT STC NGL GV  G+ VCCAE CNGV           T GA DCCSA ILA+N+ C D APCVM +GTFTPAP+          A                       GSRD+ F             T V   AP+     GM++             S  XXXXXXXXXXX       G TMAP+T+       GSA++SAGSVV+ AAM GGMFAV+AA RN
Sbjct:    1 MNKMNFAALLGVVLALAGSVG---AQTCAGGISGVESTSLDVCCTLECGTCGGVGCTPANTSSLTANDCCATEISESGVMCSDTGVAPCILSTEAASADSVCDNGQTGVQDPDTDVCCPLECGESCGGEGCGTIPGVDASQCCASIIEQSGIVCGDGIEAPCTQVAVAVADSVCSNGFPGIENEDATVCCDPACVVCGGSTCGNVAGLTGADCCTGTIIANDELCSEKGSAPCVVDPPEVTASTCANGLAGVSSGS-VCCAEVCNGVXXXXXXXXXXXTNGAEDCCSATILAANIACVDTAPCVMVEGTFTPAPAVVPTVAATTTAPLAPGETVTMAPTPTSQTAAPTPGSRDLDFG------------TGVPTPAPTSVEEAGMSSXXXXXXXXXXIGESMAXXXXXXXXXXXTAGPSALGDTMAPSTAPPGAATAGSAALSAGSVVSVAAMAGGMFAVLAATRN 450
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BLAST of mRNA_P-littoralis_Contig157.22.1 vs. uniprot
Match: A0A6H5K7R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE)

HSP 1 Score: 364 bits (934), Expect = 2.300e-113
Identity = 188/322 (58.39%), Postives = 228/322 (70.81%), Query Frame = 3 
Query:  120 MMGKI-NLVALLGITVAL-VGTLAPAAAQTCTGDIRGVQSTSEDICCTLECGVCGGEGCNPGNSSTLTAFDCCTAEIESTGVMCIDTQAAPCILSTPAASNDSTCENGQTGVQDPDTDVCCPLDCGDFCGGGGCGTIPGVDGSQCCASAILDSGILCGDGVQPPCAI-VTLAENDTTCSNGLPGVESD-NLICCVAACGTCGGQNCGDVAGFTGDDCCIENIEANNELCSDKGFAPCVVDPPEVTPSTCPNGLDGVFDGTNVCCAEACNGVCGGTGCGDIAGTAGASDCCSADILASNVTCTDA--APCVMADGTFTPAPSA 1067
            M+GK  +  AL+ + +AL VGT+ PA A  C+  + G+QSTS D+CC   C VCGG  C P N+S+LT+ DCC  EI  +G  C  + AAPCI++T AA+NDS CENGQTGV DPDTDVCCPL+CGD CGG GCG+IPGV+ +QCC+S I++SG +C D V  PC +    A+N TTCSNG+ G+E   NLICC AACG CGG  CG+V G TG DCC E I   N+LCS    APCV+DPP+   STCPNGL GV DG+ VCCAE CNGVCGG GCG I GT GA DCCS  ILA+ V C +   APC+M +GT+T AP A
Sbjct:    1 MLGKATSFTALVCVAIALLVGTMTPAGAV-CSNGLEGIQSTSLDVCCVEGCEVCGGVDCTPANTSSLTSADCCATEIVESGTFCDVSMAAPCIITTAAAANDSVCENGQTGVPDPDTDVCCPLECGDSCGGEGCGSIPGVNATQCCSSLIIESGAVCSDTVSAPCVVGAAEADNSTTCSNGIVGIEDPVNLICCDAACGLCGGPGCGNVTGLTGLDCCSEEIAVVNDLCSVTNEAPCVMDPPDFVASTCPNGLAGVQDGS-VCCAEECNGVCGGEGCGSIVGTNGAEDCCSNTILATGVDCEEGVMAPCIMLNGTYTDAPMA 320
[Close]
BLAST of mRNA_P-littoralis_Contig157.22.1 vs. uniprot
Match: D8LML5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML5_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 5.220e-63
Identity = 112/201 (55.72%), Postives = 142/201 (70.65%), Query Frame = 3 
Query:  120 MMGKI-NLVALLGITVAL-VGTLAPAAAQTCTGDIRGVQSTSEDICCTLECGVCGGEGCNPGNSSTLTAFDCCTAEIESTGVMCIDTQAAPCILSTPAASNDSTCENGQTGVQDPDTDVCCPLDCGDFCGGGGCGTIPGVDGSQCCASAILDSGILCGDGVQPPCAI-VTLAENDTTCSNGLPGVESD-NLICCVAACGTC 710
            M+GK  +  AL+ + +AL VGT+ PA A  C+  + G+QSTS D CC  ECG+CGG GC P N+S+LT+ DCC  EI  +G +C  + AAPCI++T AASNDS CENGQTGVQDPDTDVCCPL CGD CGG GCG++ GVD +QCC++ I++SG +C D V  PC +    A+N TTCSNG+ G+E   NLI  V  C  C
Sbjct:    1 MLGKATSFTALVCVAIALLVGTMTPAGAV-CSNGLEGIQSTSLDACCVEECGLCGGVGCTPANTSSLTSADCCATEIIESGTLCEVSMAAPCIITTAAASNDSVCENGQTGVQDPDTDVCCPLVCGDSCGGEGCGSLAGVDATQCCSNLIIESGAVCSDTVSAPCVVGAAEADNSTTCSNGIVGIEDPVNLIWYVWMCSAC 200
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BLAST of mRNA_P-littoralis_Contig157.22.1 vs. uniprot
Match: A0A6H5JSA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA0_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 5.990e-24
Identity = 65/137 (47.45%), Postives = 82/137 (59.85%), Query Frame = 3 
Query:  636 TTCSNGLPGVESDNLICCVAACGTCGGQNCGDVAGFTG-DDCCIENI--EANNELCSD-----KGFAPCVVDPP------EVTPSTCPNGLDGVFDGTNVCCAEACNGVCGGTGCGDIAGTAGASDCCSADILASNV 1004
            +TCSNG+PGV SD  +CC+ ACG CGG  CG +AG  G  DCC + I  E+    C +     +GF P  ++P        V PSTC NG+ G  DG  +CC E C G CGG GCG I GT G+ +CC +DILA+ V
Sbjct:    4 STCSNGIPGV-SDGEVCCLEACGQCGGVGCGAIAGTNGASDCCPDTIKEESGGVFCGEAPCVMEGFTPSPLNPALDGTAAPVAPSTCSNGIPGYQDGV-ICCLEIC-GRCGGDGCGTIPGTGGSDNCCPSDILAAGV 137
[Close]
BLAST of mRNA_P-littoralis_Contig157.22.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 2.420e-23
Identity = 73/157 (46.50%), Postives = 96/157 (61.15%), Query Frame = 3 
Query:  636 TTCSNGLPGVESDNLICCVAACGTCGGQNCGDVAGFTG-DDCCIENI--EANNELCSDK-----GFAPCVVDPP------EVTPSTCPNGLDGVFDGTNVCCAEACNGVCGGTGCGDIAGTAGASDCCSADILASNVTCTDAAPCVMADGTFTPAPS 1064
            +TCSNG+PGV SD  +CC+ ACG CGG+ CG +AG  G  DCC + I  E+    C +      GF P  ++P        V PSTC NG+ G  DG  +CC E C G CGG GCG I GT G+ +CC + ILA+ V C +A PC++ +G +TPAP+
Sbjct:  290 STCSNGIPGV-SDGDVCCLEACGQCGGEGCGAIAGTNGASDCCPDTIKEESGGVFCGEAPCVMAGFTPSPLNPAFDGTAAPVAPSTCSNGIAGYQDGA-ICCLEIC-GRCGGDGCGTIPGTGGSDNCCPSTILAAGVVCGEA-PCII-EG-YTPAPA 440
[Close]
BLAST of mRNA_P-littoralis_Contig157.22.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.660e-22
Identity = 92/291 (31.62%), Postives = 125/291 (42.96%), Query Frame = 3 
Query:  426 CENGQTGVQDPDTDVCCPLDCGDFCGGGGCGTI-PGVDGSQCCASAILDSGILCGDGVQPPCAIVTLAENDT--------------------------------------TCSNGLPGVESDNLICCVAACGTCGGQNCGDVAGFTG-DDCCIENIEANNELCSDKGFAPCVVDPPEVTPS--------------------------------TCPNGLDGV--FDGTNVCCAEACNGVCGGTGCGDIA-GTAGASDCCSADILASNVTCTDA--APCVMADGTFTPAPSA 1067
            C NG  G+Q   +  CC  +CG+ CGG  C     G+    CC S I + G LC   ++ PC +   A   +                                      TCSNG+PG++SDN  CC+A CG CGG +C +  G  G D+CC+ +I  + E CS    APC +D     PS                                TC  G+ G+   DG  VCC   C  +CGG+GC  +     G   CCS+DIL++  +C++   APCV+AD   TPAP A
Sbjct: 1165 CSNGIPGIQSGVS--CCLAECGE-CGGSDCAEYGDGLGADNCCQSNIEEYGELCSIKLEAPCVVDDSAPAPSPVTMPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDTCSNGIPGIQSDNA-CCLAECGACGGSDCDEFGGGLGADNCCVSDIVEHGEPCSIALEAPCYIDDSAPAPSPVAMPTAXXXXXXXXXXXXXXXXXXXXXXTEPTCSTGIPGIESSDGA-VCCPTGCT-MCGGSGCSTVGMPDYGPESCCSSDILSTGASCSETGEAPCVLADVVLTPAPVA 1449
[Close]
BLAST of mRNA_P-littoralis_Contig157.22.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.910e-22
Identity = 110/333 (33.03%), Postives = 147/333 (44.14%), Query Frame = 3 
Query:  186 PAAAQTCTGDIRGVQSTSEDICCTLECGVCGGEGCNPGNSSTLTAFDCCTAEIESTGVMCIDTQAAPCILSTPAA----------SNDSTCENGQTGVQDPDTDVCCPLDCGDFCGGGGCGTIPG-VDGSQCCASAILDSGILCGDGVQPPCAIVTLAENDT--------------------TCSNGLPGVESDNLICCVAACGTCGGQNCGDVAG-FTGDDCCIENIEANNELCSDKGFAPCVVD----PPEVTPSTCPNG---LDGVFDGTNVCCAEACNGVCGGTGCGDIAGTAGASDCCSADILASNV-TCTDAAPCVMADGTFTPAPS 1064
            PA++  C G ++G      D+CC+ ECG CGG GC  G+ + LTA +CCT+ I +  V C    +APC++    +          S   TC+    G      D CC   C + CGG GC    G + G+ CC S I +   LC      PC +    + DT                    TC   L G       CC A C  CGG  C D  G  TG DCC  +I   + LCS  G APC+VD    P         +G    DGV  G + CC+  C G CGG            +DCC++DI  SN+ + T AAPC++   +  P P+
Sbjct:   82 PASSGGCDGILQG------DVCCSAECGTCGGSGC--GSRAGLTANECCTSTIAAANVPC---GSAPCVVDGDTSPTXXXXXXXXSGSFTCDGVLKG------DYCCSAGCVE-CGGSGCSDRGGGLTGADCCTSDISN---LCSVTGAAPCIV----DGDTSPTXXXXXXXXXXXXXSGSFTCDGVLKGD-----YCCSAGCVECGGSGCSDRGGGLTGADCCTSDI---SNLCSVTGAAPCIVDGDTSPTXXXXXXXXSGSFTCDGVLKG-DYCCSAGC-GECGGXXXXXXXXGLTGADCCTSDI--SNLCSVTGAAPCIVDGDSTGPTPT 377
[Close]
BLAST of mRNA_P-littoralis_Contig157.22.1 vs. uniprot
Match: D8LML4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML4_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.660e-18
Identity = 51/84 (60.71%), Postives = 60/84 (71.43%), Query Frame = 3 
Query:  822 VDPPEVTPSTCPNGLDGVFDGTNVCCAEACNGVCGGTGCGDIAGTAGASDCCSADILASNVTCTDA--APCVMADGTFTPAPSA 1067
            +DPP+   STCPNG+ GV DG+ VCCAE CNGVCGG GCG I GT GA DCCS+ IL + V C     APC+M +GT+T AP A
Sbjct:    1 MDPPDFVASTCPNGIAGVQDGS-VCCAEECNGVCGGEGCGSIVGTNGAEDCCSSTILTTGVDCDVGVVAPCIMLNGTYTDAPMA 83
[Close]
BLAST of mRNA_P-littoralis_Contig157.22.1 vs. uniprot
Match: A0A6H5JZG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG5_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.440e-17
Identity = 63/218 (28.90%), Postives = 97/218 (44.50%), Query Frame = 3 
Query:  183 APAAAQTCTGDIRGVQSTSEDICCTLECGVCGGEGC-NPGNSSTLTAFDCCTAEIESTGVMCIDTQAAPCILSTPAASNDSTCENGQTGVQDPDTDVCCPLDCGDFCGGGGCGTIPGVDGSQCCASAILDSGILCGDGVQPPCAIVTLAENDTTCSNGLPGVESDNLICCVAACGTCGGQNC---GDVAGFTGDDCCIENIEANNELCSDKGFAPCVV 824
            A A A+TC+  + G+   S  +CC+L+CG CGG+GC   G+++ L    CC+  I+++   C +T  APCI+ +           G   +  P   V                    V   Q C + +                +  L ++  TCSNGL G++    +CC   CG CGG+ C   G   G  GD CC   I+A++E C +   APC++
Sbjct:  234 AQAGAETCSNGLEGIDG-SGGVCCSLDCGQCGGKGCYTSGSANGLGGDFCCSGGIKASDEYCDETNEAPCIIGS---------RPGAKMIHVPSLHV----------------IYDRVTHKQACLANVY---------------LFFLGQSVETCSNGLEGIDGSGGVCCPLDCGQCGGKGCYTSGSANGLGGDFCCSGGIKASDEYCDETNEAPCII 410
[Close]
BLAST of mRNA_P-littoralis_Contig157.22.1 vs. uniprot
Match: A0A0G4EQ49_VITBC (GH10 domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EQ49_VITBC)

HSP 1 Score: 89.7 bits (221), Expect = 1.310e-14
Identity = 78/246 (31.71%), Postives = 95/246 (38.62%), Query Frame = 3 
Query:  198 QTCTGDIRGVQSTSEDICCTLECGVCGGEGCNPGNSSTLTAFD----CCTAEIESTGV--MCIDTQAAPC-----------------ILSTPAA------------SNDSTCENGQTGVQDPDTDVCCPLDCGDFCGGGGCGTIPGVDGSQCCASAILDSGILCGDGVQPPCAIVTLAENDTTCSNGLPG-VESDNLICCVAACGTCGGQNCGDVAGFTGDDCCIENIEANNEL--CSDKGFAPCV 821
            + C   + GV  T   +CC  ECG CGGEGC       L A      CC+ EI+  GV   C  T AAPC                 +L T AA            SN + CE    G  +PD   CCPL CGD CGG       G     CC     + G  C      PC      E    C +   G   +    CC+  CG+C    C D  G   ++CC   I AN E   C    +APC+
Sbjct:  268 RVCEEFLGGVFHTRRGVCCPRECGTCGGEGC------ALRADGRPDLCCSKEIKQRGVDGYCSMTYAAPCTVDDSMVAQLERGESVRVLGTTAAAVSSNVPQKAQLSNQALCEEELMGKFNPDKQACCPLSCGDDCGGND--ACMGSQKDICCPMEFENYGPKCETNAPLPCLFELTKEQ--YCKHVAYGSYHAATNACCMRMCGSCEDDGCEDRDGGA-ENCCPSQIAANPETPTCELPAWAPCM 502
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig157.22.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D8LG71_ECTSI3.590e-13754.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K7R2_9PHAE2.300e-11358.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LML5_ECTSI5.220e-6355.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSA0_9PHAE5.990e-2447.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZM1_ECTSI2.420e-2346.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJ68_ECTSI1.660e-2231.62WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FWE8_ECTSI1.910e-2233.03Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D8LML4_ECTSI1.660e-1860.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZG5_9PHAE4.440e-1728.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0G4EQ49_VITBC1.310e-1431.71GH10 domain-containing protein n=3 Tax=Vitrella br... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig157contigP-littoralis_Contig157:106172..112415 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FJ68
Preferred nameMTPAP
PFAMsFKBP_C,GOLGA2L5,PAP_assoc
Model size2470
Max annot lvl2759|Eukaryota
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categorysignal peptide
Exons6
Evalue4.87e-36
EggNOG OGsCOG0086@1|root,KOG4725@1|root,KOG0260@2759|Eukaryota,KOG4725@2759|Eukaryota
EC2.7.7.19
Descriptionimportin-alpha family protein binding
Cds size1257
COG categoryS
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig157.22.1prot_P-littoralis_Contig157.22.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig157 107266..110168 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789748.424662-UTR-P-littoralis_Contig157:106171..1072651680789748.424662-UTR-P-littoralis_Contig157:106171..107265Pylaiella littoralis U1_48UTRP-littoralis_Contig157 106172..107265 -
1680789748.486725-UTR-P-littoralis_Contig157:110168..1102031680789748.486725-UTR-P-littoralis_Contig157:110168..110203Pylaiella littoralis U1_48UTRP-littoralis_Contig157 110169..110203 -
1680789748.4949396-UTR-P-littoralis_Contig157:112331..1124151680789748.4949396-UTR-P-littoralis_Contig157:112331..112415Pylaiella littoralis U1_48UTRP-littoralis_Contig157 112332..112415 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789748.4374897-CDS-P-littoralis_Contig157:107265..1078071680789748.4374897-CDS-P-littoralis_Contig157:107265..107807Pylaiella littoralis U1_48CDSP-littoralis_Contig157 107266..107807 -
1680789748.4467373-CDS-P-littoralis_Contig157:108045..1082581680789748.4467373-CDS-P-littoralis_Contig157:108045..108258Pylaiella littoralis U1_48CDSP-littoralis_Contig157 108046..108258 -
1680789748.45631-CDS-P-littoralis_Contig157:108620..1088391680789748.45631-CDS-P-littoralis_Contig157:108620..108839Pylaiella littoralis U1_48CDSP-littoralis_Contig157 108621..108839 -
1680789748.4653301-CDS-P-littoralis_Contig157:109214..1094241680789748.4653301-CDS-P-littoralis_Contig157:109214..109424Pylaiella littoralis U1_48CDSP-littoralis_Contig157 109215..109424 -
1680789748.478314-CDS-P-littoralis_Contig157:110095..1101681680789748.478314-CDS-P-littoralis_Contig157:110095..110168Pylaiella littoralis U1_48CDSP-littoralis_Contig157 110096..110168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig157.22.1

>prot_P-littoralis_Contig157.22.1 ID=prot_P-littoralis_Contig157.22.1|Name=mRNA_P-littoralis_Contig157.22.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=419bp
MMGKINLVALLGITVALVGTLAPAAAQTCTGDIRGVQSTSEDICCTLECG
VCGGEGCNPGNSSTLTAFDCCTAEIESTGVMCIDTQAAPCILSTPAASND
STCENGQTGVQDPDTDVCCPLDCGDFCGGGGCGTIPGVDGSQCCASAILD
SGILCGDGVQPPCAIVTLAENDTTCSNGLPGVESDNLICCVAACGTCGGQ
NCGDVAGFTGDDCCIENIEANNELCSDKGFAPCVVDPPEVTPSTCPNGLD
GVFDGTNVCCAEACNGVCGGTGCGDIAGTAGASDCCSADILASNVTCTDA
APCVMADGTFTPAPSAAGAVTPAPSAGSRDMAFTMAPTAGSRDLDLTSVP
SAAPSGMTASAAPSAGSRGLDLTRAPAMAPGSTMAPTTSGSASVSAGSVV
TFAAMVGGMFAVVAAARN*
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mRNA from alignment at P-littoralis_Contig157:106172..112415-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig157.22.1 ID=mRNA_P-littoralis_Contig157.22.1|Name=mRNA_P-littoralis_Contig157.22.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6244bp|location=Sequence derived from alignment at P-littoralis_Contig157:106172..112415- (Pylaiella littoralis U1_48)
CGTTCGGCAAGACGTGTGGTCTCCCGGGCTTGCTGCTCGGTCCGCGCAGC
GTTCAGGGCCGCAGTGTTGTCCAGGACCTTTTGGGTGGGGTGGCTCGGCC
TCGATGATGCACGCCGTGGTAGTGTTGACATGGTCTCCGTGATGTATGTC
GCTTAAAACTGAAAGTGAACAGGTGTGCTCGCTTGTTTCCATATTTAGTG
GGCCAAATGGCGCGTAAAATATGAAAGTCGGGCTATCTATTACGGAAATA
ACGGGACTGTGGGGATCGGTTCTCGGTTTTGAGGACGGTTCTTAAAAAAT
GAAAGCTTATTTCCGAAAAATTCCTTATTTCCGAAGCTGAAAAACGAGTT
TGAAAGACTCTACTTGTAATAACTGCGGTGTGCTCACTACTAACTAAAGC
GGTGCGCTTGTGTGCATTTCGATGAACAACATCGGTATGCTTTTAAGCAC
AACACAACTTGTAGCTGCCTGCTGTACACAAACGGTACCTCCACACGAAG
ATGGTATCGCCAAGTGCAAAGAAGGGAACTCTGTCTGAGCGGAGTCTGCT
GAGAAGCTGAGGAGCTCGCTCGTTCGAGTAACATGTTGTCGGTCGCAGAA
TATGTACAACGGCTGAAATCATGGGCTTCGTTGACTCTGAAAAGGGTCAG
TAGGGTATACATATGTGTGTTGTCATCCCATATTCTCTGGCACACTAGTC
TGCACCTTGCGGTTCAAACTACAGGCTAGGCCCATCGACGAAGTCACACA
GGAGGAATTACCTCCACCTTCCTTCTGCGGTACATGCGTGAGATTTTTTC
TCGCGAGCTGGTGTGCAACACCCAATCAAAGAGACACTTCTTCCCAGTTT
TTTCGGTCATCGATCTCGAACTACTTGTAAGGACTACCAACGCGCCTGAG
TCAGGCCGATGAAGGGCATCATCGTGCACGGCGTTAGAGGCACGGTAGCT
CCCGCACTAGCCATACAATCGTCACTGCATGCATTTCACGACCGTCTCTC
CTCTGACTTACTGATCGTGCCTCTTCCTCTCTCCACACCTCCGCTTTTTA
GATTTTCGATGAACGCAGCTGCAGCTGCGTGGACCCAAACCCATTTCTAA
AATCGAAGTCTTATTTCGATTTTGGAATTTAGATTGGGCATTCCGCGGGG
ACAAGAGCAGCTCAGGGGGTGATTCTTATGGGTACGGTCAACGTTATTTT
GGCCTGGCGTTTTGACCCCCCTGCAAGAATCCAACCAGAGAACCCCCTAC
CCCCCCCACCCACAAACAGCCCTGTTGCACACATCATGCGCCAGCACCAA
CCAGAACTCGACCCCTGGACATCGATGCCGATCAAACCTGATGGAGCGTG
TGCTCCTTTGTTCTCAAGTTGGCCACAAGAAGTTTGGTGGCAGTGGGTTC
GGGCTGTGGCGAGATTTTGCGGCGGTGTGCGTCGGAGATGGAAATACAGA
TGAAATCGAAATAGCGGTCTTCGCTCCTGTTTTTCCAGCCAAAAAACAGG
CTCGGAGACCGTTTTTTTTCCACCGTAATTTTTCCTGCCTCAACCCACTC
CGCCGCCGAAAGCTCGCCACAGCCGAAGCCTACACCCTCCAAATTTCCCG
TGTCCTACCTGAGAACACTAGAGCGTACCGTGCAACAGTTTTAGTCTCGA
TTGGTGTCCCAGGGGTCGAGTTCTGCTTGGTGCTGTCTCCTGTTGTGCTC
AAGTAGATTTTTCAAGCGTTTGGACTCTCGGTTATTTCGGGGGGGGGGGG
GGGGGGGTACCTCACGAGAAAAAACACAGGACCAAATAGCGGAGCCGCAA
GAAACGGTCTCAGCATCTTCTCTATGAGTGTCCGGCGATTTATCCCCACT
TGCCTGAAATAATTATACCTGTTACTTCGTACTTGATACAGCGAGCACTG
CTGTAATACTTCTGTCAAATATCTGTACTGCTGTACAGGTGGTGCGTCAG
GCGAAGATGACAAACAAGATGTTCCATTTATATTATTTTGTGATTGTGTT
CCCGTGGTTTTGCGAACGCAAGTGAGACGACGTAGCAGCGAAAATCAACA
GCAGTAACAAGGACAACAGCGGCGACAGATATCATACGATACCGCGTAGG
TAATGGTACTCCGAAAATGAATAAGAGTATGTACAGCAGTACCATTATCT
TGTTCTTACAAGCTGTAGCTGCGTTTCCTTTTTGCTCCGTTCCCCCCCGC
GCGCCCAACCAGTCAAGCACCTTTTTACAACTTCTACCTACGATACCATG
ATGGGCAAGATCAACCTGGTGGCTCTGTTGGGGATCACCGTGGCTCTCGT
GGGTACCTTGGCGCCCGCAGGTGATTCGATGGATCCTTTTTTGTGAAAGT
AGTTATTTTTTGTTTGGTTTTTTACAGTATGGACGTGCATGTAATTTTCA
GGAAGACGAGACGGGTTCGAGCCCATCAGCTCCCGCGTGCTGGGTTTAAC
ATTTAGGCGGCATTTTCGTCCTGTACGACAAGGTTGATGTTCCCATTCTC
ACATTCATTCGCATGAGCTCACCCCCAGTACTGCAAGCCGCTCTGTGAAG
GCGCGTTTGATACGTCGCACGTGTATCTAAGAGGAAGTTCGTCATGTTTT
CGAATTTGTTTCCTTCTTTCGTGGACCGATCACCACCGCGCGTCAGCCAT
GTGTAAAGAAAAAGAGGATCCGAATGCAACCCTTGTATATTCAAGCACGA
TACAGCAACCAGCGGCTGGGTGAGGTTGTCCTCGCGCCCCCTGTTTGTGC
AGGCCCTTTGCGTTCTGCTGTACGTATACTCGATTATACCTTCGTGTTTT
TGAGTCTCGAGCCGGCAACGCGGATGGAAGTCCACAGAACACCCATTTGG
TCCCCCTGCTTCAATACTTCCCCCTGGTATATATTATGTAGCATTCCTTC
ACATGGTTGAAGACCTGGCGCCTTGAGAGAGGGTGATTGACAACACACAC
GCACACTAACCGGCTGCACTGTCGCTGCTTTCGTTTCACAGCCGCCCAAA
CATGTACGGGTGATATCCGGGGTGTCCAGTCAACCTCCGAAGACATCTGC
TGCACGTTGGAGTGCGGAGTGTGCGGTGGGGAAGGGTGCAACCCGGGAAA
CAGCTCTACCCTGACAGCATTCGACTGCTGCACCGCGGAGATTGAGTCGA
CTGGGGTCATGTGCATAGACACCCAAGCCGCGCCCTGCATCCTCTCCACA
CGTACGGACGGATAAAAGGGTTCATGTGCAGATGACTGCTTGGCATTCGC
TCCCTCTTATGTGTGTGTTTGTTGGATCTATTTCTTCCGAGGCGGCGGTA
TCCGCTCGATCAACAACGTGGGACTTTTTTTTTTTGTCATAATTTTTGAA
GTTTTTTTCATCGAAAGCTTGGTTTCCGACTGTCGCTTGATTTCTCATCC
CACCACCGATGTCGCACACGCGGCATGAGCACGAGCTTGATGTTTATTTT
ATCATGAATGAAAAAATCTACGAACGGAGTGTCTCTGCTGTCATCCTGAG
GATGATACACGTGGTTGTCCGTTTCGCACGTACTGACACGCTTGATTGGA
CGCTCGTGCTGCCTGGTTGTCAACAGCCGCCGCCTCCAACGACTCGACGT
GCGAAAACGGCCAGACTGGTGTTCAGGACCCCGACACGGATGTGTGCTGC
CCTCTCGATTGCGGCGATTTCTGCGGTGGGGGCGGGTGCGGAACCATCCC
CGGAGTCGATGGCAGCCAGTGCTGCGCCAGCGCCATCTTGGATTCCGGAA
TCCTGTGCGGTGACGGAGTTCAACCTCCCTGCGCAATAGTAACACGTGAG
TTGGGGCGGGTGTTCTGCTTTTCGTGGACATTTTTGATTCTCTGGAACGA
GGTGTGCCGCCAGAGGGCACGATGGCGTTGGGGGCTTGTGTTGTCGTAGA
GCGTGTCGAGTACAATCACGTCAATCAGGCTCCCGCGCTCGTTTCTTGAC
AACAAGAACGTGGCGGATATGAAATACGCATCAGCCTTTCTGGCTGCCCA
TTTCATTACTGGCTAAACACGGAGTGCTGCTCTTATTACTTTCCCATGGC
TTAAATGTGCACAGCAGCGGTAACCTGCAACTGTGATTCAATACACAGCA
GTATTTTCTTCTCCTGTCGTTCCTGACGAATTTTTTTCCTCCTCGACTTT
CCCACAGTCGCCGAAAACGACACCACCTGCAGCAACGGATTGCCGGGCGT
GGAGAGTGACAACCTCATCTGCTGCGTCGCTGCGTGCGGCACGTGCGGTG
GTCAAAACTGCGGAGATGTCGCCGGTTTTACCGGCGACGACTGCTGCATC
GAAAACATCGAAGCCAACAATGAGCTGTGCTCCGATAAAGGTTTTGCTCC
CTGCGTCGTTGACCCCCCTGGTGAGACATCAAAGTATGGAGGCGGGTATT
TCCGACTGTTGGTTGAAAAGTATGTGCTTCAAAAGCGTACAGGTGTTTTT
CGTTCTTTCGGTCCAACCGACCCCATTTAAGCTCTCGGCTAGATCCCGCT
TGTTTACAATATTTAACCCCGCCCTTGCCTTCGCCATGTCACTTCGTATT
TTACATTTTACGATCCCCAAAAACCTCTCCCGCGCTCGTTTTCTTGTGGC
CACCACAGAGGTGACTCCTTCCACCTGCCCCAACGGTCTCGACGGCGTCT
TCGACGGCACCAACGTCTGTTGCGCCGAGGCCTGCAACGGCGTGTGCGGT
GGCACCGGCTGCGGTGACATTGCCGGCACGGCCGGCGCGTCCGACTGCTG
CTCGGCGGACATCCTCGCCTCGAACGTGACCTGCACCGACGCCGCCCCGT
GCGTGATGGCCGACGGCACCTTCACGCCGGCCCCGTCGGCGGCAGGGGCG
GTAACCCCCGCTCCCTCCGCCGGCTCCCGCGACATGGCGTTCACCATGGC
CCCGACTGCCGGCTCCAGGGACCTCGACCTCACCTCTGTGCCCAGCGCCG
CGCCTTCAGGCATGACCGCCAGCGCAGCACCATCGGCGGGTTCGAGGGGA
CTTGATCTAACTCGCGCACCCGCAATGGCCCCCGGTTCCACCATGGCCCC
GACGACGTCTGGCTCCGCATCGGTGTCTGCCGGCAGCGTAGTAACGTTTG
CAGCAATGGTGGGCGGCATGTTCGCAGTGGTGGCTGCGGCACGCAACTAA
AAAATACTCGAGTATATATCAAAGCGTTGTAAGTTCTCTTGGCCTCTACA
TGACCACATTATGTGTATCAGATACGACCATTTGTTGTGCCTTTTTCTGC
TTTTTTTTAGGGGGGGTTGTGTTTTGTTCCGTGGACACGCGTGTGTTGTC
ATGGGAGCGGTTCCTGTGGTCGGTAATCGAAATAACTGCGGTATCATGGT
TCTTTTTTCCAATATGTGTGTCGACTAAGTTTACTTGGCTAAAAATAATT
TAAAGACGTCCTTGGATGTTGTTGATGGATTTTCGAGGTTCATATACGGG
CGTCGTGTGCACGCACACGTGAGGAGTCCGCGGGCCTAGCGAGCTGCTTC
TTTTCTAGCGGGGGCGTGGTGAAGTCACGTTCTAACGTTCACGTGACGAG
GTTTCGGGGTTTTATTTTGGGCAGTCGAGAGAGGATTAAATTAATCAACA
CTCCGCCTCCGTTCTTCCGTTAAGGTATGCGAGGAAACGGAGTGATCGTA
ACGGATTTTGGTTGGGGGTGGGACAGGAGCCATGATGCATGACGAGCTTT
TTTGGCCTCGCAGCGAGGGAAAAGGATATTGTCTTGCAGGCTTCGGGGCT
CCGCGGGGAGTGATGAGCACCCCCCTTCAGGCGTCCATTTTTGCTGTCCA
CTGACCTTCAGTCGGGGGTAGCGAGGGCGAAAGGAAAATAAAAAGTACCG
ATGTAGGTGACCACACTAGTAGCCTTTTCACCAGACGATTGGTTCATTCT
AGTACACCTATATTTTGTGTTTCTTTTGGCGCTGTAATGCATAGCAGTCG
AAAGTGGCATTCTAGGAATGCCAGCGGGGTTGACAAGACTACCACCAGAT
TGTCTTTTGAGTCTTGGAACCTCAGGGGAGCTGCCACGTTTCATTATCTG
ACGAGTTTTAGAAACACACGTTGATGTTTCCCATTCTTTGTGTCCTTTGT
AAATCTACTCCAGATCCTTGGAGAGAGCGGACACATTTGTGTTTGTATGC
AGAAAGTTGAAAAAAAGAAGCTTCACCTCATACAAACAAAAACTCTGAAT
GAACGTCCCGGTCGACATTATATTTGCTGGACCTTTCGATCGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig157:106172..112415-

>mRNA_P-littoralis_Contig157.22.1 ID=mRNA_P-littoralis_Contig157.22.1|Name=mRNA_P-littoralis_Contig157.22.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1257bp|location=Sequence derived from alignment at P-littoralis_Contig157:106172..112415- (Pylaiella littoralis U1_48)
ATGATGGGCAAGATCAACCTGGTGGCTCTGTTGGGGATCACCGTGGCTCT
CGTGGGTACCTTGGCGCCCGCAGCCGCCCAAACATGTACGGGTGATATCC
GGGGTGTCCAGTCAACCTCCGAAGACATCTGCTGCACGTTGGAGTGCGGA
GTGTGCGGTGGGGAAGGGTGCAACCCGGGAAACAGCTCTACCCTGACAGC
ATTCGACTGCTGCACCGCGGAGATTGAGTCGACTGGGGTCATGTGCATAG
ACACCCAAGCCGCGCCCTGCATCCTCTCCACACCCGCCGCCTCCAACGAC
TCGACGTGCGAAAACGGCCAGACTGGTGTTCAGGACCCCGACACGGATGT
GTGCTGCCCTCTCGATTGCGGCGATTTCTGCGGTGGGGGCGGGTGCGGAA
CCATCCCCGGAGTCGATGGCAGCCAGTGCTGCGCCAGCGCCATCTTGGAT
TCCGGAATCCTGTGCGGTGACGGAGTTCAACCTCCCTGCGCAATAGTAAC
ACTCGCCGAAAACGACACCACCTGCAGCAACGGATTGCCGGGCGTGGAGA
GTGACAACCTCATCTGCTGCGTCGCTGCGTGCGGCACGTGCGGTGGTCAA
AACTGCGGAGATGTCGCCGGTTTTACCGGCGACGACTGCTGCATCGAAAA
CATCGAAGCCAACAATGAGCTGTGCTCCGATAAAGGTTTTGCTCCCTGCG
TCGTTGACCCCCCTGAGGTGACTCCTTCCACCTGCCCCAACGGTCTCGAC
GGCGTCTTCGACGGCACCAACGTCTGTTGCGCCGAGGCCTGCAACGGCGT
GTGCGGTGGCACCGGCTGCGGTGACATTGCCGGCACGGCCGGCGCGTCCG
ACTGCTGCTCGGCGGACATCCTCGCCTCGAACGTGACCTGCACCGACGCC
GCCCCGTGCGTGATGGCCGACGGCACCTTCACGCCGGCCCCGTCGGCGGC
AGGGGCGGTAACCCCCGCTCCCTCCGCCGGCTCCCGCGACATGGCGTTCA
CCATGGCCCCGACTGCCGGCTCCAGGGACCTCGACCTCACCTCTGTGCCC
AGCGCCGCGCCTTCAGGCATGACCGCCAGCGCAGCACCATCGGCGGGTTC
GAGGGGACTTGATCTAACTCGCGCACCCGCAATGGCCCCCGGTTCCACCA
TGGCCCCGACGACGTCTGGCTCCGCATCGGTGTCTGCCGGCAGCGTAGTA
ACGTTTGCAGCAATGGTGGGCGGCATGTTCGCAGTGGTGGCTGCGGCACG
CAACTAA
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