mRNA_P-littoralis_Contig157.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig157.19.1
Unique NamemRNA_P-littoralis_Contig157.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig157.19.1 vs. uniprot
Match: D8LG73_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG73_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 3.190e-73
Identity = 128/173 (73.99%), Postives = 145/173 (83.82%), Query Frame = 2 
Query:  227 AVATLHMTSV--------GGTSTTRADIAKVMGAAVAGTLALKVAPCAAATRTRTELVGLLKDARKQLDPVDKMIDGAKWDAIRNIIKTSPLADVKNVVVELAKQADDDESALLLGLRQDVLDHVQYLDSFSYNNVFVGEERQILGTKIDFDTPRMELRQAREAFDIILEVLP 721
            A AT HM S         G    TRAD A+ +GA +AGTL LKV  C+AA R++ +LV LL++AR QLDPVD+MI+ AKWDAIRNIIKTSPLADVKNV+ ELA+Q+D+D+SALLLGLRQDVLDHVQYLDSFSYNNVFVGEERQILGTKIDFDTPRMELRQAREAFDII+EVLP
Sbjct:   12 ASATKHMISASPASVNSRGSRGMTRADAARAVGATIAGTLGLKVTSCSAAVRSKEDLVRLLREARTQLDPVDQMIEDAKWDAIRNIIKTSPLADVKNVIAELARQSDEDDSALLLGLRQDVLDHVQYLDSFSYNNVFVGEERQILGTKIDFDTPRMELRQAREAFDIIMEVLP 184
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BLAST of mRNA_P-littoralis_Contig157.19.1 vs. uniprot
Match: R7QPP4_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPP4_CHOCR)

HSP 1 Score: 97.8 bits (242), Expect = 1.180e-19
Identity = 41/111 (36.94%), Postives = 74/111 (66.67%), Query Frame = 2 
Query:  383 LKDARKQLDPVDKMIDGAKWDAIRNIIKTSPLADVKNVVVELAKQADDDESALLLGLRQDVLDHVQYLDSFSYNNVFVGEERQILGTKIDFDTPRMELRQAREAFDIILEV 715
            L+  R ++D +D +I  AKWD++R ++ + P+  VK+V  +L   +  D    ++GLR+D+   ++ LD+  Y NVF+GE+RQILGTK+D+D P++ L   ++A D ++++
Sbjct:   92 LQSIRARVDDIDPLIAAAKWDSVRTVLASRPVVGVKDVCNQLLNASSQDAGGAIVGLREDLQSAIRLLDTSVYANVFIGEDRQILGTKVDYDVPKIYLGDVKDALDSLIDI 202
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BLAST of mRNA_P-littoralis_Contig157.19.1 vs. uniprot
Match: A0A812T2C6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812T2C6_9DINO)

HSP 1 Score: 60.1 bits (144), Expect = 2.830e-7
Identity = 39/131 (29.77%), Postives = 68/131 (51.91%), Query Frame = 2 
Query:  338 PCAAATRTRTELVGLLKDARKQLDPVDKMIDGAKWDAIRNIIKTSPLADVKNVVVE---LAKQADDDESALLLGLRQDVLDHVQYLDSFSYNNVFV-GEERQILGTKIDFDTPRMELRQAREAFDIILEVL 718
            P  A+  +  EL+ LL+  R  L+P+ KM+   KWD +R+I+KT P+A + N+ +E   L K  D      +L L  ++   +Q  D  SY+N +V G+  +    K+    P   ++ A    D +L+++
Sbjct:    4 PVGASAESNDELIALLRQDRDLLEPLPKMLKDQKWDNVRSILKTPPVAYLWNLGMEKNTLKKLGDSLGEIQVLELMDEIASDLQTADEISYSNNYVYGQPGE---GKVKIKEPIEYMKMAMSKLDEVLKIV 131
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BLAST of mRNA_P-littoralis_Contig157.19.1 vs. uniprot
Match: A0A1Z5KBF4_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBF4_FISSO)

HSP 1 Score: 61.2 bits (147), Expect = 4.820e-7
Identity = 43/139 (30.94%), Postives = 73/139 (52.52%), Query Frame = 2 
Query:  338 PCAAATRTRTELVGLLKDARKQLDPVDKMIDGAKWDAIRNIIKTSPLAD---------VKNVVVELAKQADDDESALLLGLRQDVLDHVQYLDSFSYNNVF-----VGEERQILGT-KIDFDTPRMELRQAREAFDIIL 709
            P A+   + +E +  ++ ARKQ++ V  +I   KWD++R I+ T PLAD         +KN   ++     D+ +A+   LR+D++ H++YLD   YNNVF     +GE        K  ++ P  E + + EA D ++
Sbjct:   63 PQASWASSLSESLQAIQQARKQMENVPNLIQEEKWDSVRAILITPPLADCWAKTSRPLLKNYADQVGDNGGDELAAI--ELREDLISHLRYLDMAVYNNVFNPINTMGENGATKALIKSYYEDPINEYKASIEALDSLI 199
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BLAST of mRNA_P-littoralis_Contig157.19.1 vs. uniprot
Match: A0A812L274_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812L274_SYMPI)

HSP 1 Score: 55.5 bits (132), Expect = 2.000e-5
Identity = 30/91 (32.97%), Postives = 50/91 (54.95%), Query Frame = 2 
Query:  338 PCAAATRTRTELVGLLKDARKQLDPVDKMIDGAKWDAIRNIIKTSPLADVKNVVVE---LAKQADDDESALLLGLRQDVLDHVQYLDSFSY 601
            P AA   +  EL+ LL+  R+ L+P+ KM+   KWD +R+++KT P+A + N+ ++   L K  D      +L L  ++   +Q  D  SY
Sbjct:   25 PAAAVAESNEELISLLRQQRELLEPLPKMLKDQKWDNVRSVLKTPPVAYLWNLGMDKNNLKKLGDSLGEIQVLELMDEIASDLQTADEISY 115
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BLAST of mRNA_P-littoralis_Contig157.19.1 vs. uniprot
Match: A0A448YYW4_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYW4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.650e-5
Identity = 46/149 (30.87%), Postives = 74/149 (49.66%), Query Frame = 2 
Query:  314 GTLALKVAPCAAATRTRTELVG----LLKDARKQLDPVDKMIDGAKWDAIRNIIKTSPLADVKNVVVELAKQ-------ADDDESALLLGLRQDVLDHVQYLDSFSYNNVF--VGEERQILGTKIDFDT----PRMELRQAREAFDIIL 709
            GT  L   P  A+    +E VG    +L +ARKQL+ V  ++   K+D +R ++  +PL D  +    + K+        D DE A L G R+++L H+++LD   YNNVF  +  E +   +K   D+    P  E   ++ A D +L
Sbjct:   83 GTAVLAAGPPPASAAYSSEDVGEIRAVLIEARKQLETVPALLADEKFDGVRTLLTEAPLRDCWSKTTPILKKYAEALGDTDGDELAALEG-REELLQHLRFLDMAVYNNVFNPIATEGKTGASKALIDSYYNDPTREYETSKRALDELL 230
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig157.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LG73_ECTSI3.190e-7373.99Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
R7QPP4_CHOCR1.180e-1936.94Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A812T2C6_9DINO2.830e-729.77Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A1Z5KBF4_FISSO4.820e-730.94Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A812L274_SYMPI2.000e-532.97Hypothetical protein n=1 Tax=Symbiodinium pilosum ... [more]
A0A448YYW4_9STRA2.650e-530.87Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig157contigP-littoralis_Contig157:91009..95126 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog159749.K0SK28
Model size1766
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categorysignal peptide
Exons4
Evalue2.93e-10
EggNOG OGs2E027@1|root,2S7I0@2759|Eukaryota,2XGKC@2836|Bacillariophyta
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-17_004000.1
Cds size660
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig157.19.1prot_P-littoralis_Contig157.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig157 91088..94099 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789748.3416378-UTR-P-littoralis_Contig157:91008..910871680789748.3416378-UTR-P-littoralis_Contig157:91008..91087Pylaiella littoralis U1_48UTRP-littoralis_Contig157 91009..91087 +
1680789748.3948982-UTR-P-littoralis_Contig157:94099..951261680789748.3948982-UTR-P-littoralis_Contig157:94099..95126Pylaiella littoralis U1_48UTRP-littoralis_Contig157 94100..95126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789748.3551483-CDS-P-littoralis_Contig157:91087..913811680789748.3551483-CDS-P-littoralis_Contig157:91087..91381Pylaiella littoralis U1_48CDSP-littoralis_Contig157 91088..91381 +
1680789748.364622-CDS-P-littoralis_Contig157:92647..927641680789748.364622-CDS-P-littoralis_Contig157:92647..92764Pylaiella littoralis U1_48CDSP-littoralis_Contig157 92648..92764 +
1680789748.375556-CDS-P-littoralis_Contig157:93204..933851680789748.375556-CDS-P-littoralis_Contig157:93204..93385Pylaiella littoralis U1_48CDSP-littoralis_Contig157 93205..93385 +
1680789748.3836806-CDS-P-littoralis_Contig157:94031..940991680789748.3836806-CDS-P-littoralis_Contig157:94031..94099Pylaiella littoralis U1_48CDSP-littoralis_Contig157 94032..94099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig157.19.1

>prot_P-littoralis_Contig157.19.1 ID=prot_P-littoralis_Contig157.19.1|Name=mRNA_P-littoralis_Contig157.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=220bp
MEVLLCKVSCIYILLCVSASRGVNAFSCQTNYVRGAAAPATGKTALSRAA
VATLHMTSVGGTSTTRADIAKVMGAAVAGTLALKVAPCAAATRTRTELVG
LLKDARKQLDPVDKMIDGAKWDAIRNIIKTSPLADVKNVVVELAKQADDD
ESALLLGLRQDVLDHVQYLDSFSYNNVFVGEERQILGTKIDFDTPRMELR
QAREAFDIILEVLPPADEV*
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mRNA from alignment at P-littoralis_Contig157:91009..95126+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig157.19.1 ID=mRNA_P-littoralis_Contig157.19.1|Name=mRNA_P-littoralis_Contig157.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4118bp|location=Sequence derived from alignment at P-littoralis_Contig157:91009..95126+ (Pylaiella littoralis U1_48)
AGATACGAGACACACGAGTATAGTGTGCGCGCTGAGACACATGAAGGCCT
GAGTGATACCAGGTAGATCATACACGAATATGGAGGTTCTGCTCTGCAAA
GTTTCGTGTATATATATCCTCTTGTGCGTCTCTGCTTCCCGTGGGGTGAA
CGCTTTCTCCTGCCAAACCAATTACGTGAGGGGAGCAGCAGCACCTGCAA
CAGGAAAGACAGCTCTCTCCAGAGCAGCAGTAGCAACGCTGCACATGACG
AGTGTCGGCGGAACATCCACTACGAGGGCAGATATCGCGAAGGTCATGGG
CGCTGCCGTTGCTGGAACCCTGGCGCTAAAAGTCGCCCCATGTGCTGCGG
CGACTAGAACGAGGACAGAGCTGGTGAATTTTATTCGTTTTGACCCACCA
ATTTAACGTGTTGAAATGTTCAAAATTGACACACCAGTACTACTGCTGCA
ACAAGTATTCCATACAGCATAAGTACCTGGAAGACAAAAAGCATTAAAGG
AATTGATCCAATCCTCCACCCCCCCCCGTCCGGACTACCCGATGATCCCG
TATGTACTCGGGCAGCACGCTCGGATATCTGTCACGCGCAATATTCCGCA
CTGACATGATGCCAGGGGCGAGCTGCCCCCCGAGATGAAGTTGGCACAAT
CGATCGAGCTCAGAAAATAGGTTTGTGTATTGTCGTCCTACAAAGCATAT
CTATTCTCTCCCGAGGCAAGGTCTTCCAAAACTAACGTCCTGCTCCACTT
TTGACCCCGATGCCACACGCTTCAGGACCAGAGTACAATGCACTCAGGTG
TGTGTTTCGTTTCTCAGCATTATAGCGGCATTAAGTAAAAATAAAAAAGA
GTGAGGCTCCGAGGGGGAGCGGGGCCATCCCTTTCCCGGCGAAGGCGTGG
CCGCCCACGTTGATCCTTCGCCTAGGTTTGCGCCCTCCATACGTGAGATG
ATCGGAATCCACACACATAATCGTTTTTACCCCGCGCACGGGATCGCCGT
TACAGTAGTAGTGCCTGGTCTATATTTCCTCTCGATGTTCTTCAAGAGAG
CGCCTCGATTCAAGAGCCTCTTGTTCGGCGATAGGCTCGGGTCCTTGCTT
CCTCTGTGGACTACCGACAGCCAGTACATGTACTCGCAGTAGTAGGTTTT
GGTGTGGGGTGCTGAACAGGGCAAGGGCATCACAAGTTGTAATCACATTC
TGTTTTTGGATGGCTCTCTTGCCTGTAATTGGTCGGCTCTCAGGCAGTCT
TACGCCCCGAAGTCTCTTCTAAATCCCCCCCCGCCCCGGAACCGATATAC
AGTGCTTGATTTCCCCGCAGCCAGATATTGTCTAGAGCTGTCTGGTAACG
TGAATCGCACCAATGGCACCGCCTACGTGAAGGCGTAGTTGGGCGTTTAA
GAATTGGTCTGGGGCGGGGGACATGGGGGGGGCTGGGGAAATCGAGGAGA
TACTTCGGTACGGCAGTTGTCCCATAGGTGCCTTGAAATAAAGTATATTA
GGTACGAAGTACCTGGTTTCAATTCTAGCCGCCTCCGTGAGCAAGTCTCG
TGTGACGTCGGAAAGGAAATGATGTTATGCCTCGTGCCGTCTGGTCTCTC
TTCGGATACATGCACGCGTACACGCTGCTCTGTGCACAGGTTGGGCTCTT
GAAGGACGCGAGGAAACAGTTGGACCCGGTCGACAAGATGATAGACGGCG
CCAAATGGGACGCGATCAGAAACATCATCAAGACCTCTCCTTTGGCAGAC
GTCAAGGTGTGTTTGTGTGTTGCCTAATAGATGCTATGCTGTGCTGTACT
GTGTCGTGTGAGTGTGTGCGTGTGTGTTTGATTTTATGCTGTGCTGTGCT
CTAGGCTACACATGGCACGGACGTGAAATCTAAAACACAACTCCACGGAT
GGACACAAAAACACATCAAAATTTCTTTAATCTACTTGTACAGTGATCGC
GAATATGCTCGAAGTGGGGTCCAAGAACGCACAGCAAGAAGTATCTTCGG
GCGGACACCAACCGTCACCTTTTTCAATAAATATTATCATTACCCCGGAT
GGACTCTCCCCGCCCCACATCCATACCTCGCTGTCGCCGCCGATGATTGC
ACCTCCACCCCCACCGCCTCTATCAATCCGTATTCCGTCTCCCCCCCCCC
TACTCCCCCGCTGCATATGATTTGGTCTACAAACAAACACAAACAGAACG
TGGTCGTAGAACTGGCGAAGCAAGCGGACGATGACGAGTCGGCGCTGTTG
CTGGGCCTGCGGCAGGACGTGTTGGATCACGTGCAGTACCTGGACAGCTT
TTCTTACAACAACGTTTTCGTTGGGGAGGAGCGTCAAATTCTGGGCACGA
AGATTGATTTCGACACGCCGCGGATGGGTGAGCTGAGGTTTCTGCTTCAC
TCGAGGTTGTTTCTGGTTGCTGTTGTTGTAATATTGTCGCTCGCTTCACT
TTTACTCAACCTCCTCCTGATCTCTGTGCCTGTCTCGTATCACAGTGGTT
CCCTCGTATCACTGGGCATATCTTACCAATCCGCCACGTGAAGATGGACG
ATCAGTAGCCGTATAACAGTCATACGTGTGTTGTGGTTTGTGTTCCCATT
CCATCGATTCTGGACGCCAGTGTGAACACCTTTCGGTATAAGTAGGGTGC
ACCAACCGGGATCAAACAAGACGGTTCAAGAAGAAGTATTTCTTTCACCT
TTCTTTCTGCCGTGCTCTGCCTTTATTTTGTCTTGAGCAGAGTTCGGCCG
TTTCTTTTCCTCATGAACTTCTACCAGTCGAATTTTGTGTACTGATAAGA
AAGTATTCGCCCGCTTCATTCCCAGGATTTGGGTGAGAATAAACCCGGTC
GAGGTTCGAACTCACGACCTAGGTGTCAGAGGGTTTCGAGTTAGAACGCA
CGAGTACAGGCAACATACATAAATGAAAGCCTGCCCCAACACCCTCTGCC
TTATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTTTTTCTTCCG
CTGCCGCGACTCTGCAACGCCAGAGCTGAGGCAAGCCCGCGAGGCGTTCG
ACATCATCTTGGAGGTATTGCCACCCGCGGATGAAGTCTAGGTACAAGTA
TTTCCTGGACTCGAGACAATAAACGATCGGTGTTGCTGTCGTCGAGTGTG
TGTGTGTCGGCGGTTCAGTGGCACATGTACTCAAGCAGTGCGTTCTGTTT
TTATTTTTATTTTTTGTGTCCGATGTGGTGCTGATTGTGGGCATGTGTCG
TAGCACCCCTTCCACGCCCTCCCGACTCGAGAAATATGACAAGTCGTTAT
TTCTACAGAGAGGAGAAGCACCAAATCGCAACCAACCGGAAGGTGTCAAA
ATTGGCAGTTTGCTGCTCTCTGTGTTTTTGTAGACCTGCATGTTTCATCT
CCATGTACACGCGTGTGCGCGAATCACTAGTCATGCAGTCGAGAGACCCT
CGCTAGGTATCTCTCTCACTCTCCACGTGGCCCGGGTGGAACAACAGTAG
TGGTGGTAGTAGTGTCTTCGTGCAAATTGCCGGCAGTAGAAAAACGCTCG
GCTGGCCGCGAGCCCGTACGTTAGGTGGTTCTAATACGGCAAGTGCTTTG
AACCAGCGATTTGACGGTGTGTGCGTGTGCATTCGTCAGAGAGAGGGAGG
GGGGGGAGGAGGAGGGCATAGAGAGCACAGTAGTTATGTCCTCTGCCGGG
CCCTGTACATGGCCAGTAGTAGAAGGCTCTGTGGGCGGCGAACCCCGTCT
TGTGTTGACTTGGAGTTTGAAGCCTCAGGATAAACACGCTTCCCGTGAAA
GGGCAGCGTCCACAACGATTTTGTTATTGATGGGCCCTTGTTATAGCGGC
TGCTGGGAAGTAAGAAGGGCTTCTGCGGCTGCGGATGCGCACAGCCCCTT
TGCGCGAAAAACCGCCTTGGTGGACGCATCGAAATTCGCTTCGCGAGAAA
TATAATATTACAGAGTTTATCATGTACGCGTCGAAAAACCGCTATCAGTA
AAGGTCTTCCATGCACTAATACATATCGGCGATCATACAAGTCGTAAAAC
CACCATTTCTTATCCTACAAACATTTCTGATACAAGTACGTTTTTCGGGT
TGCCTCAATCGATCAGAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig157:91009..95126+

>mRNA_P-littoralis_Contig157.19.1 ID=mRNA_P-littoralis_Contig157.19.1|Name=mRNA_P-littoralis_Contig157.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=660bp|location=Sequence derived from alignment at P-littoralis_Contig157:91009..95126+ (Pylaiella littoralis U1_48)
ATGGAGGTTCTGCTCTGCAAAGTTTCGTGTATATATATCCTCTTGTGCGT
CTCTGCTTCCCGTGGGGTGAACGCTTTCTCCTGCCAAACCAATTACGTGA
GGGGAGCAGCAGCACCTGCAACAGGAAAGACAGCTCTCTCCAGAGCAGCA
GTAGCAACGCTGCACATGACGAGTGTCGGCGGAACATCCACTACGAGGGC
AGATATCGCGAAGGTCATGGGCGCTGCCGTTGCTGGAACCCTGGCGCTAA
AAGTCGCCCCATGTGCTGCGGCGACTAGAACGAGGACAGAGCTGGTTGGG
CTCTTGAAGGACGCGAGGAAACAGTTGGACCCGGTCGACAAGATGATAGA
CGGCGCCAAATGGGACGCGATCAGAAACATCATCAAGACCTCTCCTTTGG
CAGACGTCAAGAACGTGGTCGTAGAACTGGCGAAGCAAGCGGACGATGAC
GAGTCGGCGCTGTTGCTGGGCCTGCGGCAGGACGTGTTGGATCACGTGCA
GTACCTGGACAGCTTTTCTTACAACAACGTTTTCGTTGGGGAGGAGCGTC
AAATTCTGGGCACGAAGATTGATTTCGACACGCCGCGGATGGAGCTGAGG
CAAGCCCGCGAGGCGTTCGACATCATCTTGGAGGTATTGCCACCCGCGGA
TGAAGTCTAG
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