mRNA_P-littoralis_Contig1567.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1567.1.1
Unique NamemRNA_P-littoralis_Contig1567.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Match: A0A6H5JPK1_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPK1_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 5.360e-29
Identity = 55/79 (69.62%), Postives = 66/79 (83.54%), Query Frame = 3
Query:    6 SWDTRLEMLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKLLHLCHVVRPGKFFIRRILNQLGL 242
            SWDTR+EMLGW++DT  +TISV   K+ ++  MLAEWPV RR A++ +VRSLL KLLHLC VVRPGKFF+RRILNQLGL
Sbjct:  690 SWDTRMEMLGWVIDTVALTISVSQEKVAKMRAMLAEWPVERRVATVTEVRSLLGKLLHLCEVVRPGKFFVRRILNQLGL 768          
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Match: V4B2J2_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4B2J2_LOTGI)

HSP 1 Score: 64.3 bits (155), Expect = 2.310e-10
Identity = 33/91 (36.26%), Postives = 57/91 (62.64%), Query Frame = 3
Query:   15 TRLEMLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKLLHLCHVVRPGKFFIRRILNQLGLGTLALNTPHSDGMHS 287
            TR+  L   +DT + T+ V P +++++  ++  W +TR++A++KD++SLL KL  +C+ VRPG+ F+ R+LN L       N  + D  HS
Sbjct:   72 TRMVFLCVSVDTQSTTMEVTPERVSEILALVESW-LTRKRATLKDLQSLLGKLHFICNCVRPGRIFVSRLLNWL---PTTFNDKNGDKKHS 158          
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Match: A0A7M5UJ89_9CNID (Reverse transcriptase domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5UJ89_9CNID)

HSP 1 Score: 54.7 bits (130), Expect = 1.420e-6
Identity = 26/70 (37.14%), Postives = 43/70 (61.43%), Query Frame = 3
Query:   21 LEMLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKLLHLCHVVRPGKFFIRRILN 230
            L  LG  +D+ T TI +P  KL  L D++  W + +RK   +D+ SL+  L   C V++PG+ F+RR+++
Sbjct:  311 LSYLGIEIDSVTFTIRLPANKLASLRDLVGSW-IDKRKCVKRDLLSLIGSLSFACKVIKPGRIFLRRLID 379          
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Match: A0A8B6G915_MYTGA (Reverse transcriptase domain-containing protein n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6G915_MYTGA)

HSP 1 Score: 54.3 bits (129), Expect = 1.940e-6
Identity = 26/74 (35.14%), Postives = 49/74 (66.22%), Query Frame = 3
Query:   15 TRLEMLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKLLHLCHVVRPGKFFIRRILNQL 236
            TR+E LG  +DT  +T+ V   ++ ++  ++  W + ++KAS+++++S+L KL  +   VRPG+ F+ R+LN L
Sbjct:  224 TRMEFLGITVDTVKLTLEVTSDRVLEISLLVQAW-LRKKKASLRELQSILGKLHFVSTCVRPGRLFVSRLLNWL 296          
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Match: A0A7M5VD07_9CNID (Reverse transcriptase domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5VD07_9CNID)

HSP 1 Score: 53.5 bits (127), Expect = 3.180e-6
Identity = 27/71 (38.03%), Postives = 45/71 (63.38%), Query Frame = 3
Query:   18 RLEMLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKLLHLCHVVRPGKFFIRRILN 230
            +L  LG  +D+S   I +P  K ++L + L  W + RRK + K++ S + KL  +C VVRPG+ F+RR+++
Sbjct:   86 QLTYLGIEIDSSKQIIRIPNDKYSELMESLPFW-ILRRKCTKKELLSFIGKLSLVCKVVRPGRIFLRRLMD 155          
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Match: K0SXC9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SXC9_THAOC)

HSP 1 Score: 53.5 bits (127), Expect = 3.840e-6
Identity = 23/56 (41.07%), Postives = 39/56 (69.64%), Query Frame = 3
Query:    6 SWDTRLEMLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKL 173
            SW T  ++LGW++DT +MTI +PP +L +L ++LA  P T+++ S+K    +L +L
Sbjct: 1134 SWSTVKQILGWVIDTVSMTIHLPPHRLERLGEILASIPATQKRTSVKKWHKVLGEL 1189          
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Match: K0RTJ3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RTJ3_THAOC)

HSP 1 Score: 53.1 bits (126), Expect = 5.200e-6
Identity = 23/56 (41.07%), Postives = 38/56 (67.86%), Query Frame = 3
Query:    6 SWDTRLEMLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKL 173
            SW T  EMLGWI+DT  +TIS+ P +  +L ++LA  P+T+++ S++    +L +L
Sbjct:  595 SWSTLKEMLGWIIDTVNLTISLAPRREERLAEILASIPITQKRTSVRKWHKVLGEL 650          
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Match: UPI001C9213BB (uncharacterized protein LOC122378437 n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C9213BB)

HSP 1 Score: 52.8 bits (125), Expect = 6.690e-6
Identity = 30/72 (41.67%), Postives = 44/72 (61.11%), Query Frame = 3
Query:   15 TRLEMLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKLLHLCHVVRPGKFFIRRILN 230
            TR+E+LG +LDT+ MTIS+P  KL  L  +L E   TR     + + SL+ KL+H    +  G+ F RR+L+
Sbjct:  179 TRMELLGCVLDTADMTISLPLAKLRALIALLRETRSTRTIRQ-RQLLSLIGKLVHATKCIPAGRSFFRRLLD 249          
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Match: A0A8B6CVB7_MYTGA (Reverse transcriptase domain-containing protein n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6CVB7_MYTGA)

HSP 1 Score: 52.8 bits (125), Expect = 6.820e-6
Identity = 26/74 (35.14%), Postives = 48/74 (64.86%), Query Frame = 3
Query:   15 TRLEMLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKLLHLCHVVRPGKFFIRRILNQL 236
            TR+E LG  +DT  +T+ V   ++ ++  ++  W + ++KAS+++++S+L KL  +   VRPG+ F  R+LN L
Sbjct:  342 TRMEFLGITVDTVKLTLEVTSDRVLEISLLVQAW-LRKKKASLRELQSILGKLHFVSTCVRPGRLFASRLLNWL 414          
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Match: A0A8B6EMN8_MYTGA (Reverse transcriptase domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EMN8_MYTGA)

HSP 1 Score: 51.2 bits (121), Expect = 2.430e-5
Identity = 24/71 (33.80%), Postives = 47/71 (66.20%), Query Frame = 3
Query:   15 TRLEMLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKLLHLCHVVRPGKFFIRRIL 227
            TR+E LG  +DT  +T+ V   ++ ++  ++  W + ++KAS+++++S+L KL  +   VRPG+ F+ R+L
Sbjct:  350 TRMEFLGITVDTVKLTLEVTSDRVLEISLLVQAW-LRKKKASLRELQSILGKLHFVSTCVRPGRLFVSRLL 419          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1567.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JPK1_9PHAE5.360e-2969.62Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
V4B2J2_LOTGI2.310e-1036.26Uncharacterized protein n=1 Tax=Lottia gigantea Ta... [more]
A0A7M5UJ89_9CNID1.420e-637.14Reverse transcriptase domain-containing protein n=... [more]
A0A8B6G915_MYTGA1.940e-635.14Reverse transcriptase domain-containing protein n=... [more]
A0A7M5VD07_9CNID3.180e-638.03Reverse transcriptase domain-containing protein n=... [more]
K0SXC9_THAOC3.840e-641.07Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
K0RTJ3_THAOC5.200e-641.07Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
UPI001C9213BB6.690e-641.67uncharacterized protein LOC122378437 n=1 Tax=Amphi... [more]
A0A8B6CVB7_MYTGA6.820e-635.14Reverse transcriptase domain-containing protein n=... [more]
A0A8B6EMN8_MYTGA2.430e-533.80Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1567contigP-littoralis_Contig1567:5342..5628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog45351.EDO30391
Model size287
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.66e-06
EggNOG OGs2E8XS@1|root,2SFC9@2759|Eukaryota
Cds size261
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789747.5544648-UTR-P-littoralis_Contig1567:5341..53671680789747.5544648-UTR-P-littoralis_Contig1567:5341..5367Pylaiella littoralis U1_48UTRP-littoralis_Contig1567 5342..5367 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789747.5642629-CDS-P-littoralis_Contig1567:5367..56281680789747.5642629-CDS-P-littoralis_Contig1567:5367..5628Pylaiella littoralis U1_48CDSP-littoralis_Contig1567 5368..5628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1567.1.1prot_P-littoralis_Contig1567.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1567 5368..5628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1567.1.1

>prot_P-littoralis_Contig1567.1.1 ID=prot_P-littoralis_Contig1567.1.1|Name=mRNA_P-littoralis_Contig1567.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=87bp
MLGWILDTSTMTISVPPTKLTQLCDMLAEWPVTRRKASIKDVRSLLRKLL
HLCHVVRPGKFFIRRILNQLGLGTLALNTPHSDGMHS
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mRNA from alignment at P-littoralis_Contig1567:5342..5628+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1567.1.1 ID=mRNA_P-littoralis_Contig1567.1.1|Name=mRNA_P-littoralis_Contig1567.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=287bp|location=Sequence derived from alignment at P-littoralis_Contig1567:5342..5628+ (Pylaiella littoralis U1_48)
CTTTGTCGTGGGACACGCGTCTCGAGATGTTGGGATGGATTTTGGACACT TCTACCATGACCATTTCCGTGCCACCGACCAAGCTGACCCAATTGTGTGA CATGCTTGCCGAATGGCCCGTAACAAGGCGGAAAGCTTCGATCAAAGACG TGCGTTCCCTGTTGCGCAAGCTTTTGCACCTGTGCCACGTAGTGCGACCA GGAAAGTTTTTCATACGCCGGATCCTTAATCAGTTGGGCCTAGGCACGTT GGCGCTCAACACCCCCCACAGCGACGGTATGCATTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1567:5342..5628+

>mRNA_P-littoralis_Contig1567.1.1 ID=mRNA_P-littoralis_Contig1567.1.1|Name=mRNA_P-littoralis_Contig1567.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=261bp|location=Sequence derived from alignment at P-littoralis_Contig1567:5342..5628+ (Pylaiella littoralis U1_48)
ATGTTGGGATGGATTTTGGACACTTCTACCATGACCATTTCCGTGCCACC
GACCAAGCTGACCCAATTGTGTGACATGCTTGCCGAATGGCCCGTAACAA
GGCGGAAAGCTTCGATCAAAGACGTGCGTTCCCTGTTGCGCAAGCTTTTG
CACCTGTGCCACGTAGTGCGACCAGGAAAGTTTTTCATACGCCGGATCCT
TAATCAGTTGGGCCTAGGCACGTTGGCGCTCAACACCCCCCACAGCGACG
GTATGCATTCC
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