mRNA_P-littoralis_Contig1566.3.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1566.3.1 vs. uniprot
Match: A0A6H5JJM4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM4_9PHAE) HSP 1 Score: 372 bits (955), Expect = 1.480e-120 Identity = 203/313 (64.86%), Postives = 206/313 (65.81%), Query Frame = 1
Query: 1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDKRT----------------------MLHGKGLLRP-----------------------------------------------------------------------------GAFKAQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPRALSGVPLEHIRAWSRGVAIH 642
MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDK+ ML GL R GAFKAQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPRALSGVPLEHIRAWSR V ++
Sbjct: 501 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDKKKYPVGTRVTSGSPLLGLNKGGEQMLKEMGLWRLDGERAKGLVKCCNKCKADNAASRQAIAAFNKGGEQRERVLEQARREQQSSPAEGPAAEGRAAARRQRCCMERVFSDLGAFKAQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPRALSGVPLEHIRAWSRVVWLY 813
BLAST of mRNA_P-littoralis_Contig1566.3.1 vs. uniprot
Match: A0A6H5JD27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD27_9PHAE) HSP 1 Score: 300 bits (767), Expect = 3.310e-94 Identity = 167/296 (56.42%), Postives = 184/296 (62.16%), Query Frame = 1
Query: 1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDK----------------------RTMLHGKGLLR-----------------------------------------------------------PGAFK-AQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPRALSGVPLEHIRAWSRGVAIH 642
M VG+QHDGYWTSD MCAQLPA IAM EL++GPHRQGVFIFDNSTGHN YD DALLAH I+LAPGGEK ALRVFED +GK V+PTFQ+GDTLLTD+KIFLPKTE QKK K RK GT LDK ML GL R G +K A LNKV+QIFK+AGHVCIFLPKYHPELNAIERYWG +KHVLRLHCE SLTHML+IL A+SGVPL+HIRAWSR V ++
Sbjct: 368 MPVGQQHDGYWTSDDMCAQLPAIIAMAELTSGPHRQGVFIFDNSTGHNPYDADALLAHNINLAPGGEKVALRVFEDVDGKKVYPTFQLGDTLLTDRKIFLPKTEEQKKNKKRKSGTALDKDKFPVGTKVVLRSPLLGLNKGGEQMLREMGLWRLRGEKRGLVKGCNKCKADNAAARQAIAAFNKGGEERERVLEQAWWEQQKFFHRGSRGSGRGCWKEAALNKVEQIFKEAGHVCIFLPKYHPELNAIERYWGSIKHVLRLHCEISLTHMLEILRGAMSGVPLDHIRAWSRVVWLY 663
BLAST of mRNA_P-littoralis_Contig1566.3.1 vs. uniprot
Match: A0A6H5K550_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K550_9PHAE) HSP 1 Score: 282 bits (722), Expect = 3.740e-86 Identity = 158/281 (56.23%), Postives = 166/281 (59.07%), Query Frame = 1
Query: 1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDKRT------MLHGK---GLLRPG------------------------------------------------------------------------------------------AFKAQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCE 546
MTVGKQ DGYWTSDRMCAQLPAA+A FEL+NGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEK ALRVFEDDNG+ VHPTFQ GDTLLTDKKIFLPKT QKK+KGRK GTGLDK+ + HG GL + G AFKAQLNKV+QIFK AGHVCIFLPKYHPELNAIE YWGYVKH LRLHCE
Sbjct: 553 MTVGKQQDGYWTSDRMCAQLPAALATFELTNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKTALRVFEDDNGRMVHPTFQDGDTLLTDKKIFLPKTPEQKKIKGRKHGTGLDKKQYPVGTKVTHGSPLLGLSKGGEQMLKEMGLWRLDGERAKGLVKCCNKCKAENAASRQAIAAFNKGGEERERVLEQARXXXXXXXXXXXXXXXXXXXXXXRCCMERVFSDLRAFKAQLNKVEQIFKKAGHVCIFLPKYHPELNAIELYWGYVKHYLRLHCE 833
BLAST of mRNA_P-littoralis_Contig1566.3.1 vs. uniprot
Match: D7FZS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS5_ECTSI) HSP 1 Score: 228 bits (580), Expect = 1.530e-72 Identity = 116/151 (76.82%), Postives = 126/151 (83.44%), Query Frame = 1
Query: 1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRKFGTGLDKRTMLHGKGLLRPGAFKAQLNKV-QQIFKDAG 450
MTVGKQHDGYWTSDRMCAQLPAAIA FEL++GPHRQGV IFDNSTGHN YDDDALLAHK+SLAPGGEK ALRVFEDDNG+TVHPT Q+G TLLTDKKIFLPKTEAQ+K KGRKFGTGLDK+ G PG+ LNK +Q+ K G
Sbjct: 1 MTVGKQHDGYWTSDRMCAQLPAAIATFELTHGPHRQGVSIFDNSTGHNTYDDDALLAHKMSLAPGGEKTALRVFEDDNGRTVHPTPQLGGTLLTDKKIFLPKTEAQEKTKGRKFGTGLDKKQYPFGTKAT-PGSPLLGLNKGGEQMLKGMG 150
BLAST of mRNA_P-littoralis_Contig1566.3.1 vs. uniprot
Match: A0A6H5JT56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT56_9PHAE) HSP 1 Score: 198 bits (504), Expect = 2.820e-57 Identity = 122/328 (37.20%), Postives = 150/328 (45.73%), Query Frame = 1
Query: 1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQKKMKGRK-------------------FGTGLDKRTMLHGKGLLR-----------------PG-----------------------------------------------------------------------------------AFKAQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPRALSGVPLEHIRAWSR 627
MTVG+ DGYWT+DRMC Q+P IA+ EL++ PHR V +FDNSTGH AY++ AL+A I PGG + L F DD G VH TF+ GDT+L D ++ KT Q + + R+ F G RT GL+ PG AFK +LNK++++FK AGH+CIFL KYHPELNAIERYWGY KH+LRL CEYSL HML+ILP ALSGVPL +R WSR
Sbjct: 91 MTVGQNSDGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILDDFLDDQGNLVHATFREGDTVLFDTHVYAAKTPEQLEEEEREAAKKDPKYKRPKIGSSLGDFNAGEKVRTTGRTSGLIGQAKGGQQLLMEMGLWDVPGQAPIRVLECKACKEERKAIKAAITAFNRGGEARQQALDDAAREDQDGGGDGASPEEGTEGGAAGNRVGMRRRCCIRKVFAELKAFKMELNKIEKMFKKAGHICIFLAKYHPELNAIERYWGYAKHILRLSCEYSLPHMLEILPGALSGVPLGFVRGWSR 418
BLAST of mRNA_P-littoralis_Contig1566.3.1 vs. uniprot
Match: A0A6H5K659_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K659_9PHAE) HSP 1 Score: 201 bits (511), Expect = 3.790e-56 Identity = 128/328 (39.02%), Postives = 154/328 (46.95%), Query Frame = 1
Query: 1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKT---------EAQKK---MKGRKFGTGLDK-------RTMLHGKGLLR-----------------PG-----------------------------------------------------------------------------------AFKAQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPRALSGVPLEHIRAWSR 627
MTVG+ DGYWT+DRMC Q+P IA+ EL++ PHR V +FDNSTGH AY++ AL+A I PGG + L F DD G VH TF+ GDT+L D ++ KT EA KK K KFG+ L RT GL+ PG AFK +LNK++++FK AGH+CIFL KYHPELNAIERYWGYVKH+LRL CEYSL HML+ILP ALSGVPL +R WSR
Sbjct: 524 MTVGQNSDGYWTNDRMCKQIPGLIAIHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILDDFLDDQGNLVHATFREGDTVLFDTHVYAAKTPEQLEEEEREAAKKDPKYKRPKFGSSLGDFKAGEKVRTTGRTSGLIGQAKGGQQLLMEMGLWDVPGQAPIRVLECKACKEERKAIKAAITAFNRGGEARQQALDDAAREDQDGGGDGASPEEGTEGGAAGNRVGMRRRCCIRKVFAELKAFKMELNKIEKMFKKAGHICIFLAKYHPELNAIERYWGYVKHLLRLSCEYSLPHMLEILPGALSGVPLGFVRGWSR 851
BLAST of mRNA_P-littoralis_Contig1566.3.1 vs. uniprot
Match: A0A6H5JJ42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ42_9PHAE) HSP 1 Score: 196 bits (497), Expect = 4.730e-54 Identity = 122/327 (37.31%), Postives = 150/327 (45.87%), Query Frame = 1
Query: 1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQ-----------------------------------------------------------------------KKMKGRKFGT----------------GLD---KRTMLHGKGLLRPG----------------------------AFKAQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPRALSGVPLEHIRAWSR 627
MTVG+ DG+W ++RMC Q+P IA+ EL++ PHR V +FDNSTGH AY+ AL+A I+ PGG +A L F DD G V TF+ GD LL +++ KT Q K KG + T LD +R G+ PG AFK +LNK++++FK AGH+CIFL KYHPELNAIERYWGYVKH+LRLHCEYSL HMLKILP ALSGVPL +R WSR
Sbjct: 934 MTVGQNQDGFWNNERMCKQIPGLIAIHELTSEPHRPLVMVFDNSTGHAAYETSALVASHINKGPGGGQAILDDFLDDEGNLVRTTFRAGDKLLFKAQVYAAKTPEQLKAEEEELKRNPKYKKPRNGDNLGEFAAGTEIRASGRTSRLIGQAKGGQQMLMEMGLWDVPGEDPVRVLECKACKGERAATRAAITSFNRGGEGRQQALDDAARRDETDGESAGSPGEGAAGGAAGNHVGTRSRCCIGRVFAELKAFKMELNKIEKMFKKAGHICIFLAKYHPELNAIERYWGYVKHLLRLHCEYSLKHMLKILPGALSGVPLRFMRGWSR 1260
BLAST of mRNA_P-littoralis_Contig1566.3.1 vs. uniprot
Match: A0A6H5JZW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW5_9PHAE) HSP 1 Score: 158 bits (399), Expect = 2.310e-45 Identity = 77/84 (91.67%), Postives = 79/84 (94.05%), Query Frame = 1
Query: 397 GAFKAQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLK--ILPRALSGVPLEHIRAWSRGVAIH 642
GAFKAQLNKVQQIFKDAGHVCIFLPKYH ELNAIERYWGYVKHVLRLHCEYSLTHMLK ILPRALSGVPLEHIRAWSR V ++
Sbjct: 9 GAFKAQLNKVQQIFKDAGHVCIFLPKYHGELNAIERYWGYVKHVLRLHCEYSLTHMLKXKILPRALSGVPLEHIRAWSRVVWLY 92
BLAST of mRNA_P-littoralis_Contig1566.3.1 vs. uniprot
Match: A0A6H5K344_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K344_9PHAE) HSP 1 Score: 164 bits (416), Expect = 1.450e-44 Identity = 111/307 (36.16%), Postives = 140/307 (45.60%), Query Frame = 1
Query: 1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQ---KKMKGRKFGT------------------------------GL-------------------------DKRTM-----------LHGKG-----------------------------LLRPGAFKAQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPRALSGVPLEHIRAWSR 627
+ VGK DGYW S+R+C QL A A FE+S P RQ + +FDNSTGHNAY DAL A I +PGGE+ R FE NG+T++ TF+ GD L F KTEA+ KK G++ G GL DK TM L G+G + AFK Q+N+V+++F+ AGH CIFL KYHPELNAIER+WGY K + R C+YS+ +L LP LS V L R W+R
Sbjct: 199 LRVGKNLDGYWDSNRLCVQLEAIFAAFEISREPGRQMLAVFDNSTGHNAYSPDALRAQNIRASPGGEQIPPRNFEY-NGRTIYTTFREGDVLCFRSSPFARKTEAEAVAKKRHGKRLGVFPIGTVVKRGTSSEKLIGVAKGMKEILEDMGLYKLASETKAPPLLCQRCKDEAKAKRDKSTMYNKGGESRQQALEGEGDSDDSDXXSEEGGARDAARTSRRCCCQRIISEVKAFKEQMNRVEELFEAAGHACIFLAKYHPELNAIERFWGYTKSIERRVCDYSVLSLLARLPMTLSTVSLSLCRKWAR 504
BLAST of mRNA_P-littoralis_Contig1566.3.1 vs. uniprot
Match: A0A6H5K2M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M3_9PHAE) HSP 1 Score: 164 bits (415), Expect = 2.000e-43 Identity = 109/293 (37.20%), Postives = 137/293 (46.76%), Query Frame = 1
Query: 1 MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYDDDALLAHKISLAPGGEKAALRVFEDDNGKTVHPTFQVGDTLLTDKKIFLPKTEAQ-------------------KKMKGRKFGTGL-------------------------DKRTM-----------LHGKG-----------------------------LLRPGAFKAQLNKVQQIFKDAGHVCIFLPKYHPELNAIERYWGYVKHVLRLHCEYSLTHMLKILPRALSGVPLEHIRAWSR 627
+ VGK DGYW S+R+C QL A A FE+S P RQ + +FDNSTGHNAY DAL A I +PGGE+ R FE NG+T++ TF+ GD L F KTEA+ K MK GL DK TM L G+G + AFK Q+N+V+++F+ AGH CIFL KYHPELNAI+R+WGY K + R C+YS+ +L LP LS V L R W+R
Sbjct: 330 LRVGKNLDGYWDSNRLCVQLEAIFAAFEISREPGRQMLAVFDNSTGHNAYSPDALRAQNIRASPGGEQIPPRNFEY-NGRTIYTTFREGDVLCFRSSPFARKTEAEAVGTVVKRGTSSEKLIGVAKGMKEILEDMGLYKLASETKAPPLLCQRCKDEAKAKRDKSTMYNKGGESRQQALEGEGDSDDSDXXSEEGGARDAARTSRRCCCQRIISEVKAFKEQMNRVEELFEAAGHACIFLAKYHPELNAIQRFWGYTKSIERRVCDYSVLSLLARLPMTLSTVSLSLCRKWAR 621 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1566.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1566.3.1 >prot_P-littoralis_Contig1566.3.1 ID=prot_P-littoralis_Contig1566.3.1|Name=mRNA_P-littoralis_Contig1566.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=215bp MTVGKQHDGYWTSDRMCAQLPAAIAMFELSNGPHRQGVFIFDNSTGHNAYback to top mRNA from alignment at P-littoralis_Contig1566:6990..7929+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1566.3.1 ID=mRNA_P-littoralis_Contig1566.3.1|Name=mRNA_P-littoralis_Contig1566.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=940bp|location=Sequence derived from alignment at P-littoralis_Contig1566:6990..7929+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1566:6990..7929+ >mRNA_P-littoralis_Contig1566.3.1 ID=mRNA_P-littoralis_Contig1566.3.1|Name=mRNA_P-littoralis_Contig1566.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=645bp|location=Sequence derived from alignment at P-littoralis_Contig1566:6990..7929+ (Pylaiella littoralis U1_48)back to top |