mRNA_P-littoralis_Contig1564.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1564.4.1
Unique NamemRNA_P-littoralis_Contig1564.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1564.4.1 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 6.040e-19
Identity = 45/66 (68.18%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:    7 FFGVSETLISSCKGTEKARATSSIGRRPIRASRDHPKLERVVAFLVRHEHIFAQKMPHQDESYLYL 204
            FFGVSETLISSCK T KA+A+SS+ R  I ++RD PKLE VVAFL RHE ++ QKMP+ D+SYLYL
Sbjct:  214 FFGVSETLISSCKKTPKAQASSSVHRASIASTRDRPKLEGVVAFLHRHEDMYGQKMPNSDQSYLYL 279
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1564.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JJG9_9PHAE6.040e-1968.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1564contigP-littoralis_Contig1564:8356..8987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size205
Hectar predicted targeting categoryother localisation
Exons2
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789747.4131145-CDS-P-littoralis_Contig1564:8355..84761680789747.4131145-CDS-P-littoralis_Contig1564:8355..8476Pylaiella littoralis U1_48CDSP-littoralis_Contig1564 8356..8476 -
1680789747.424138-CDS-P-littoralis_Contig1564:8904..89871680789747.424138-CDS-P-littoralis_Contig1564:8904..8987Pylaiella littoralis U1_48CDSP-littoralis_Contig1564 8905..8987 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1564.4.1prot_P-littoralis_Contig1564.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1564 8356..8987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1564.4.1

>prot_P-littoralis_Contig1564.4.1 ID=prot_P-littoralis_Contig1564.4.1|Name=mRNA_P-littoralis_Contig1564.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=68bp
KLFFGVSETLISSCKGTEKARATSSIGRRPIRASRDHPKLERVVAFLVRH
EHIFAQKMPHQDESYLYL
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mRNA from alignment at P-littoralis_Contig1564:8356..8987-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1564.4.1 ID=mRNA_P-littoralis_Contig1564.4.1|Name=mRNA_P-littoralis_Contig1564.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=632bp|location=Sequence derived from alignment at P-littoralis_Contig1564:8356..8987- (Pylaiella littoralis U1_48)
AAATTATTTTTCGGCGTATCCGAGACGCTCATCAGCTCATGCAAGGGTAC
CGAGAAGGCTCGCGCTACTAGCTCCATCGGCAGGTATCATGCATACGAGG
TCAATTGTCAATATATTATTAAAACATTATTATAGCACTGAGCTGCTCTG
CTGCCACCGTTAGGGGCCAGATGAGATAAATATTTTAGCACGCTCAAGCA
GAGGCTGCCCCGATACGTATGTCGGCGCTGCGTAATGGACTTCTTTATCA
TTATCATTCCCACTCAAGAAATAAATCGTCCGGTCCCAAAAGACTTCAAT
AGGCGCGCTTTTCCTGATGATTTTGTTTTTGCCTCCACACAGTGCTGCAT
GTTTGTGCAGTGCCGTAACTCGATGTGCGGCCTGCGTTATTTTGCGGGAT
GAAAACACCTGTGTACGACGCGTCCTTCGAAATATTTTTCCTGAACGCGC
TTCTTATAGTCTACGTATCTCCCTGCTACTTTTTTTGAATGTCTCGCGTT
CGCTTATTCAGAAGACCTATCCGCGCGTCACGCGACCACCCGAAGTTGGA
GCGCGTCGTGGCATTCCTCGTGCGCCACGAACATATCTTCGCTCAGAAAA
TGCCCCACCAGGATGAAAGCTACTTGTACCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1564:8356..8987-

>mRNA_P-littoralis_Contig1564.4.1 ID=mRNA_P-littoralis_Contig1564.4.1|Name=mRNA_P-littoralis_Contig1564.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=204bp|location=Sequence derived from alignment at P-littoralis_Contig1564:8356..8987- (Pylaiella littoralis U1_48)
AAATTATTTTTCGGCGTATCCGAGACGCTCATCAGCTCATGCAAGGGTAC
CGAGAAGGCTCGCGCTACTAGCTCCATCGGCAGAAGACCTATCCGCGCGT
CACGCGACCACCCGAAGTTGGAGCGCGTCGTGGCATTCCTCGTGCGCCAC
GAACATATCTTCGCTCAGAAAATGCCCCACCAGGATGAAAGCTACTTGTA
CCTC
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