mRNA_P-littoralis_Contig1561.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1561.4.1
Unique NamemRNA_P-littoralis_Contig1561.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1561.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1561contigP-littoralis_Contig1561:7027..7681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size487
Hectar predicted targeting categoryother localisation
Exons2
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789747.3591502-CDS-P-littoralis_Contig1561:7026..73931680789747.3591502-CDS-P-littoralis_Contig1561:7026..7393Pylaiella littoralis U1_48CDSP-littoralis_Contig1561 7027..7393 +
1680789747.368379-CDS-P-littoralis_Contig1561:7562..76361680789747.368379-CDS-P-littoralis_Contig1561:7562..7636Pylaiella littoralis U1_48CDSP-littoralis_Contig1561 7563..7636 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789747.3818855-UTR-P-littoralis_Contig1561:7636..76811680789747.3818855-UTR-P-littoralis_Contig1561:7636..7681Pylaiella littoralis U1_48UTRP-littoralis_Contig1561 7637..7681 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1561.4.1prot_P-littoralis_Contig1561.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1561 7027..7636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1561.4.1

>prot_P-littoralis_Contig1561.4.1 ID=prot_P-littoralis_Contig1561.4.1|Name=mRNA_P-littoralis_Contig1561.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=147bp
FYEASQHTCALDAASPNTSTPDGDSWATKVRKGSNAPRGRGQSSQSPRGR
GQRGRSRGSHTRKQPTSSTSSGSRSHTASHPQSKRSNRTASNGSASSSSG
RNKKAAKASSSSSKKPAPRKHEAPARAPALLDPTGPAVARRRDERR*
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mRNA from alignment at P-littoralis_Contig1561:7027..7681+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1561.4.1 ID=mRNA_P-littoralis_Contig1561.4.1|Name=mRNA_P-littoralis_Contig1561.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=655bp|location=Sequence derived from alignment at P-littoralis_Contig1561:7027..7681+ (Pylaiella littoralis U1_48)
TTCTACGAGGCCTCGCAGCACACCTGTGCACTGGACGCGGCCTCGCCGAA
TACAAGTACACCGGACGGAGACTCCTGGGCCACCAAGGTCAGGAAAGGGA
GCAACGCTCCTCGCGGTCGAGGTCAATCTTCGCAATCACCTCGGGGGCGG
GGACAACGGGGGAGATCCAGAGGCTCCCACACCCGGAAGCAGCCAACATC
GTCGACGTCGTCCGGCTCGCGCTCGCACACCGCGTCGCATCCGCAGTCGA
AGCGGAGCAACCGCACGGCCTCCAACGGCAGTGCATCTTCCTCTTCCGGC
CGGAACAAAAAGGCAGCGAAGGCTTCGTCTTCAAGCTCCAAAAAGCCGGC
ACCGCGGAAACATGAAGGCCGCGACGCCGCGAGTGACGAGCACAGCGACG
GAACTTCAGGCGGGCACACTCGCTCGAGGCGTAGTCGCCACCACCGTGGG
TCGGGCAGCGATGGTGATTCCAGCGAGAAGTCCCACACCATACGGAGCTA
TCACTCCGGCAGCGAGGACGGCGGCAGCGTCTCGAGCTCCCGCACGGGCG
CCAGCTCTACTAGACCCGACAGGTCCGGCAGTGGCTCGACGAAGGGATGA
GCGGAGGTGACGCTTTCCAACACCTGCTGCGGCTGCTATCGATCCAGTTT
GGCGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1561:7027..7681+

>mRNA_P-littoralis_Contig1561.4.1 ID=mRNA_P-littoralis_Contig1561.4.1|Name=mRNA_P-littoralis_Contig1561.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=441bp|location=Sequence derived from alignment at P-littoralis_Contig1561:7027..7681+ (Pylaiella littoralis U1_48)
TTCTACGAGGCCTCGCAGCACACCTGTGCACTGGACGCGGCCTCGCCGAA
TACAAGTACACCGGACGGAGACTCCTGGGCCACCAAGGTCAGGAAAGGGA
GCAACGCTCCTCGCGGTCGAGGTCAATCTTCGCAATCACCTCGGGGGCGG
GGACAACGGGGGAGATCCAGAGGCTCCCACACCCGGAAGCAGCCAACATC
GTCGACGTCGTCCGGCTCGCGCTCGCACACCGCGTCGCATCCGCAGTCGA
AGCGGAGCAACCGCACGGCCTCCAACGGCAGTGCATCTTCCTCTTCCGGC
CGGAACAAAAAGGCAGCGAAGGCTTCGTCTTCAAGCTCCAAAAAGCCGGC
ACCGCGGAAACATGAAGCTCCCGCACGGGCGCCAGCTCTACTAGACCCGA
CAGGTCCGGCAGTGGCTCGACGAAGGGATGAGCGGAGGTGA
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