mRNA_P-littoralis_Contig1560.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1560.5.1
Unique NamemRNA_P-littoralis_Contig1560.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1560.5.1 vs. uniprot
Match: A0A340X6L1_LIPVE (30S ribosomal protein S3, chloroplastic n=3 Tax=cellular organisms TaxID=131567 RepID=A0A340X6L1_LIPVE)

HSP 1 Score: 496 bits (1276), Expect = 3.950e-174
Identity = 254/344 (73.84%), Postives = 283/344 (82.27%), Query Frame = 1
Query:    1 MGQKVHPTGLRLGITTEHTSVWYADGPAYAEKLHEDLKVREYIRKRLAQASVSRIEIERPAQTARITIHTARPGIVIGKKGEDVERLRQQVAKLMGVPVHINIEEIRKPELDANLVAQNVXXXXXXXXXXXXXXXXXXQNAMRLGAQGIKVRVAGRLGGAEIARSETYHEGRVPLHTLRADVDYATAEALTTYGILGVKVWIFKGEVLGAREESAAQQNTQSRNRGLAHRGSSVSFGEFGLKATGRGRMTARQIEAGRRAMTRHVKRGGQIWIRVFPDKPITSKPLEVRQGKGKGNVEYWVAQIKPGKVLYEMEGVPEELAREAFRLAAAKLPFPTAFVKRQVM 1032
            MGQKVHPTG+RLGI  EHTSVWYADG  YA+ L +DLK REY+  +L  ASVSRI+I RPAQTARITIHTARPGIVIGKKGEDVE+LRQ + K MGVPVHINIEEIRKPELDA LVAQ+V                  QNAMR+GA+GIK++V+GRLGGAEIAR+E Y EGRVPLHTLRAD+DY T EA TTYG++GVKVWIFKGEV+G R+E    Q T   NRGLA RGS VSFGEF LKA  RGR+TARQIE+ RRA+TRHVKRGG+IWIRVFPDKPI+ KPLEVR GKGKG+VEYWVAQI+PGKVLYE+EGV EELAREAF LAAAKLP  T+FVKR VM
Sbjct:    1 MGQKVHPTGIRLGIVKEHTSVWYADGATYADYLLKDLKTREYLHDKLKSASVSRIDIHRPAQTARITIHTARPGIVIGKKGEDVEKLRQDLTKQMGVPVHINIEEIRKPELDAMLVAQSVAQQLERRVMFRRAMKRAVQNAMRIGAKGIKIQVSGRLGGAEIARTEWYREGRVPLHTLRADIDYNTYEAHTTYGVIGVKVWIFKGEVIGGRQEELKPQMT-GHNRGLALRGSKVSFGEFALKAVARGRLTARQIESARRALTRHVKRGGKIWIRVFPDKPISKKPLEVRMGKGKGSVEYWVAQIQPGKVLYEIEGVSEELAREAFALAAAKLPLATSFVKRTVM 343          
BLAST of mRNA_P-littoralis_Contig1560.5.1 vs. uniprot
Match: A0A6L5C9X3_9INSE (30S ribosomal protein S3, chloroplastic n=1 Tax=Ephemera danica TaxID=1049336 RepID=A0A6L5C9X3_9INSE)

HSP 1 Score: 434 bits (1115), Expect = 1.180e-147
Identity = 238/381 (62.47%), Postives = 288/381 (75.59%), Query Frame = 1
Query:    1 MGQKVHPTGLRLGITTEHTSVWYADGPAYAEKLHEDLKVREYIRKRLAQASVSRIEIERPAQTARITIHTARPGIVIGKKGEDVERLRQQVAKLMGVPVHINIEEIRKPELDANLVAQNVXXXXXXXXXXXXXXXXXXQNAMRLGAQGIKVRVAGRLGGAEIARSETYHEGRVPLHTLRADVDYATAEALTTYGILGVKVWIFKGEVLGAREESAAQQNT--------------------------------------QSRNRGLAHRGSSVSFGEFGLKATGRGRMTARQIEAGRRAMTRHVKRGGQIWIRVFPDKPITSKPLEVRQGKGKGNVEYWVAQIKPGKVLYEMEGVPEELAREAFRLAAAKLPFPTAFVKRQV 1029
            MGQK+HPTG RL +T    S WYA+   +   LHED+KVREY++++LA ASV R+ IERPA+ AR+T+++ARPG+VIGKKGED+E+LR  + ++MGVPVH++IEEIRKPELDA L+A + XXXXXXXXXXXXXXXXXX   MRLGAQGIKV  AGRL GAEIARSE Y EGRVPLHTLRAD+DYAT+EALTTYGI+G+KVW++KG++L   E+ A ++                                        + RN G+A RG+ VSFGE+GLKATGRGR+TARQIEA RRAMTRH+KRGG+IWIR+FPDKP++ KPLEVR G GKGN EYWVA+I+PGKVLYEM+GV E LAREAF LAAAKLP  T FV R +
Sbjct:   96 MGQKIHPTGFRLAVTKNWGSRWYANSKDFPGMLHEDIKVREYLKRKLAHASVGRVLIERPAKNARVTVYSARPGVVIGKKGEDIEQLRTDLQRIMGVPVHVSIEEIRKPELDAQLIADSXXXXXXXXXXXXXXXXXXXXXXMRLGAQGIKVMSAGRLNGAEIARSEWYREGRVPLHTLRADIDYATSEALTTYGIIGIKVWVYKGDMLDRNEQPAGEEPAGEDRRSRRTPAKPEGDKPRTRTVLNMLQPSRTKFRKAHKGRNEGVATRGAKVSFGEWGLKATGRGRLTARQIEAARRAMTRHIKRGGRIWIRIFPDKPVSKKPLEVRMGNGKGNPEYWVAEIQPGKVLYEMDGVNEALAREAFALAAAKLPIATTFVTRHL 476          
BLAST of mRNA_P-littoralis_Contig1560.5.1 vs. uniprot
Match: UPI00129E63AF (uncharacterized protein LOC116252365 n=1 Tax=Nymphaea colorata TaxID=210225 RepID=UPI00129E63AF)

HSP 1 Score: 426 bits (1094), Expect = 1.930e-146
Identity = 215/345 (62.32%), Postives = 269/345 (77.97%), Query Frame = 1
Query:    1 MGQKVHPTGLRLGITTEHTSVWYADGPAYAEKLHEDLKVREYIRKRLAQASVSRIEIERPAQTARITIHTARPGIVIGKKGEDVERLRQQVAKLMGVPVHINIEEIRKPELDANLVAQNVXXXXXXXXXXXXXXXXXXQNAMRLGAQGIKVRVAGRLGGAEIARSETYHEGRVPLHTLRADVDYATAEALTTYGILGVKVWIFKGEVLGARE-ESAAQQNTQSRNRGLAHRGSSVSFGEFGLKATGRGRMTARQIEAGRRAMTRHVKRGGQIWIRVFPDKPITSKPLEVRQGKGKGNVEYWVAQIKPGKVLYEMEGVPEELAREAFRLAAAKLPFPTAFVKRQVM 1032
            MGQKVHP G+RLGI  +  SVW+A+   +A+ L  D KVR+++ K+L +AS+SRI IERPA++ R+TI+TARPGIVIGKKGEDVE+LR ++AK+ GVP  INI E+RKPELDA LV++++                  QNAMR GA+GIKV V+GRLGGAEIAR E Y EGRVPLHTLRA++DY  +EA TTYG++GVKVWIFKGE+LG     +  ++  + RNRGL   G+++SFG FGLKA  RGR+TARQIE+ RRA+TR++KR G+IWIRVFPDKPIT KPLEVR GKGKGNVEYWVA I+PGK+LYE++G+ EE +REAF+LAAAKLP  T FV + VM
Sbjct:    1 MGQKVHPNGMRLGIIKKWNSVWFANSKDFADHLDSDYKVRQFLMKKLIKASISRIIIERPAKSIRVTIYTARPGIVIGKKGEDVEKLRIKIAKITGVPAQINISEVRKPELDAKLVSESITSQLERRVMFRRAMKRSVQNAMRQGAKGIKVEVSGRLGGAEIARREWYREGRVPLHTLRAEIDYNVSEAHTTYGVIGVKVWIFKGEILGGMSTRTKFRKMHKGRNRGLVV-GANISFGIFGLKAIDRGRLTARQIESARRAITRYIKRQGKIWIRVFPDKPITQKPLEVRMGKGKGNVEYWVALIQPGKILYEIDGISEEESREAFKLAAAKLPIKTTFVTKMVM 344          
BLAST of mRNA_P-littoralis_Contig1560.5.1 vs. uniprot
Match: UPI0018999657 (30S ribosomal protein S3-like n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI0018999657)

HSP 1 Score: 421 bits (1081), Expect = 1.820e-144
Identity = 207/344 (60.17%), Postives = 269/344 (78.20%), Query Frame = 1
Query:    1 MGQKVHPTGLRLGITTEHTSVWYADGPAYAEKLHEDLKVREYIRKRLAQASVSRIEIERPAQTARITIHTARPGIVIGKKGEDVERLRQQVAKLMGVPVHINIEEIRKPELDANLVAQNVXXXXXXXXXXXXXXXXXXQNAMRLGAQGIKVRVAGRLGGAEIARSETYHEGRVPLHTLRADVDYATAEALTTYGILGVKVWIFKGEVLGAREESAAQQNTQSRNRGLAHRGSSVSFGEFGLKATGRGRMTARQIEAGRRAMTRHVKRGGQIWIRVFPDKPITSKPLEVRQGKGKGNVEYWVAQIKPGKVLYEMEGVPEELAREAFRLAAAKLPFPTAFVKRQVM 1032
            MGQKV+P G+RLG+T + TS WYAD   +A+ L++DLKVR+++ +RL  A++SRI+IERPA+ A+I I++ARPG++IGKKG ++E LR +++K++ VPVHI IEEIRKPELDA LVA++V                  QN +R GA GIK+ V+GRLGGAEIAR+E Y EGRVPLHT RAD+DYATA A TTYG +GVKVWIFKGE+   R ++  +++ + RNR +AHRG+ VSFGEFGLKAT   R+TARQ+E+ RRA++RH+KRGG+I IR+FPDKPIT KPLEVRQGKGKG+VEYWVA ++PG++L+E+EG+ E LAREA    AAKLP    FVKR +M
Sbjct:    1 MGQKVNPVGIRLGVTRDWTSNWYADKKDFADHLNDDLKVRQFLEERLKGAAISRIQIERPARNAKIAIYSARPGVIIGKKGGEIEALRVEISKVIKVPVHITIEEIRKPELDAKLVAESVAQQLERRVMFRRAMKRAVQNTLRQGAFGIKISVSGRLGGAEIARTEWYREGRVPLHTFRADIDYATATAKTTYGTIGVKVWIFKGEIHAMRAKTKYRKDFKGRNRRVAHRGNRVSFGEFGLKATAYARITARQLESARRALSRHIKRGGKIIIRIFPDKPITKKPLEVRQGKGKGSVEYWVALVQPGRMLFEIEGIDEVLAREALDRTAAKLPVKCVFVKRTIM 344          
BLAST of mRNA_P-littoralis_Contig1560.5.1 vs. uniprot
Match: A0A6A5L4X0_LUPAL (30S ribosomal protein S3, chloroplastic n=4 Tax=cellular organisms TaxID=131567 RepID=A0A6A5L4X0_LUPAL)

HSP 1 Score: 420 bits (1079), Expect = 7.370e-144
Identity = 231/364 (63.46%), Postives = 280/364 (76.92%), Query Frame = 1
Query:    1 MGQKVHPTGLRLGITTEHTSVWYADGPAYAEKLHEDLKVREYIRKRLAQASVSRIEIERPAQTARITIHTARPGIVIGKKGEDVERLRQQVAKLMGVPVHINIEEIRKPELDANLVAQNVXXXXXXXXXXXXXXXXXXQNAMRLGAQGIKVRVAGRLGGAEIARSETYHEGRVPLHTLRADVDYATAEALTTYGILGVKVWIFKGEVLG---------------------AREESAAQQNTQSRNRGLAHRGSSVSFGEFGLKATGRGRMTARQIEAGRRAMTRHVKRGGQIWIRVFPDKPITSKPLEVRQGKGKGNVEYWVAQIKPGKVLYEMEGVPEELAREAFRLAAAKLPFPTAFVKRQV 1029
            MGQK+HP G RL +     S WY++   +   L  D+KVRE++ K+LA A+VSRI IERPA+ A+ITIH+ARPG+VIGKKGED+E LR  +  LMGVPVH+NIEE+RKPELDA L+AQ+ XXXXXXXXXXXXXXXXXX   MRLGAQGIK+  +GRL G EIAR+E Y EGRVPLHTLRAD+DY  AEA TTYGI+G+KVW+FKGE+ G                     AR++    Q  + RN+G+A  G+ VSFGEFGLKA GRGR+TARQIEA RR MTRH+KRGG++WIRVFPD+PI+ KP EVR G GKG+V+Y++AQI+PGK+LYEM+GV EELAREAFRLAAAKLP  T F+ RQ+
Sbjct:    1 MGQKIHPIGFRLSVQKNWASRWYSNSQNFPAMLQGDIKVREFLNKKLASAAVSRIVIERPAKNAKITIHSARPGVVIGKKGEDIESLRSSLQGLMGVPVHLNIEEVRKPELDATLIAQSXXXXXXXXXXXXXXXXXXXXXXMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRADIDYGVAEASTTYGIIGIKVWVFKGEIFGDNAAANAAVADVEPEKKMLQPARQKYRKMQ--KGRNKGIATTGNKVSFGEFGLKAIGRGRLTARQIEAARRVMTRHIKRGGRVWIRVFPDQPISKKPAEVRMGNGKGSVDYYIAQIQPGKMLYEMDGVSEELAREAFRLAAAKLPVETTFMTRQI 362          
BLAST of mRNA_P-littoralis_Contig1560.5.1 vs. uniprot
Match: A0A8B7P785_HYAAZ (30S ribosomal protein S3, chloroplastic n=2 Tax=cellular organisms TaxID=131567 RepID=A0A8B7P785_HYAAZ)

HSP 1 Score: 408 bits (1048), Expect = 1.740e-138
Identity = 210/341 (61.58%), Postives = 262/341 (76.83%), Query Frame = 1
Query:    1 MGQKVHPTGLRLGITTEHTSVWYADGPAYAEKLHEDLKVREYIRKRLAQASVSRIEIERPAQTARITIHTARPGIVIGKKGEDVERLRQQVAKLMGVPVHINIEEIRKPELDANLVAQNVXXXXXXXXXXXXXXXXXXQNAMRLGAQGIKVRVAGRLGGAEIARSETYHEGRVPLHTLRADVDYATAEALTTYGILGVKVWIFKGEVLG-AREESAAQQNTQSRNRGLAHRGSSVSFGEFGLKATGRGRMTARQIEAGRRAMTRHVKRGGQIWIRVFPDKPITSKPLEVRQGKGKGNVEYWVAQIKPGKVLYEMEGVPEELAREAFRLAAAKLPFPTAFVK 1020
            MGQK+HPTG RL +T    S WYA    +A  L EDL VREY++ +L  A+VSRI IERPA+ ARITI++ARPG+VIGKKGED+E L+ ++ K +GVPV +NIEE+RKPE+DA L+A ++               XXXQNAMRLGAQGIK+  AGRL G EIAR+E Y EGRVPLHTL+AD+DY  +EA TTYG++GVKVW+++G+ L  AR +   +Q  + RN G+A RG+ VSFG+FGLKAT RGR+TARQIEA RRA++RH+KRGG+I+IR+FPDKPI+ KP EVR G GKGN EY+VA+I+PGKVLYE+ GVPE LAREAF LAAAKLP    F +
Sbjct:    1 MGQKIHPTGFRLPVTRAWASRWYASNKNFAGMLAEDLDVREYLKAKLKSAAVSRILIERPAKNARITIYSARPGVVIGKKGEDIENLKAELTKRLGVPVAVNIEEVRKPEIDAQLIADSITQQLEKRIMFRRAMKXXXQNAMRLGAQGIKIMSAGRLNGIEIARTEWYREGRVPLHTLKADIDYGFSEAKTTYGVIGVKVWVYRGDRLANARRKYRKEQ--KGRNTGVATRGALVSFGDFGLKATERGRLTARQIEAARRAISRHIKRGGRIFIRIFPDKPISQKPAEVRMGNGKGNPEYYVAEIQPGKVLYEINGVPEALAREAFTLAAAKLPLRCTFTQ 339          
BLAST of mRNA_P-littoralis_Contig1560.5.1 vs. uniprot
Match: A0A420HQS6_9PEZI (30S ribosomal protein S3, chloroplastic n=2 Tax=cellular organisms TaxID=131567 RepID=A0A420HQS6_9PEZI)

HSP 1 Score: 398 bits (1022), Expect = 3.090e-135
Identity = 211/363 (58.13%), Postives = 262/363 (72.18%), Query Frame = 1
Query:   28 LRLGITTEHTSVWYADGPAYAEKLHEDLKVREYIRKRLAQASVSRIEIERPAQTARITIHTARPGIVIGKKGEDVERLRQQVAKLMGVPVHINIEEIRKPELDANLVAQNVXXXXXXXXXXXXXXXXXXQNAMRLGAQGIKVRVAGRLGGAEIARSETYHEGRVPLHTLRADVDYATAEALTTYGILGVKVWIFKGEVLGAR------EESAAQQNTQS----------------------RNRGLAHRGSSVSFGEFGLKATGRGRMTARQIEAGRRAMTRHVKRGGQIWIRVFPDKPITSKPLEVRQGKGKGNVEYWVAQIKPGKVLYEMEGVPEELAREAFRLAAAKLPFPTAFVKRQVM 1032
            +RLGI  +  SVW+A+   +A+ L  D KVR+++ K L++ASVSRI IERPA++ R+TI+TARPGIVIGKKGEDVE+LR  + K+ GVPV INI E+RKPELDA LV+ ++                  QNAMR GA+GIKV V+GRLGGAEIAR E Y EGRVPLHTLRA++DY+ +EA TTYG++GVKVWIFKGE+LG        E+ + Q+  Q+                      RNRGLA  G+ V+FG FGLKA  RGR+TARQIE+ RRA+TR +KR G++WIR+FPDKPIT KPLEVR GKGKGNVEYWVA ++PGK+LYE++GV EE +REAFRLAAAKLP  T FV + VM
Sbjct:    1 MRLGIIKKWNSVWFANTKDFADHLDGDYKVRQFLMKELSKASVSRIIIERPAKSIRVTIYTARPGIVIGKKGEDVEKLRTTIGKITGVPVQINISEVRKPELDAKLVSDSITSQLERRVMFRRAMKRSVQNAMRQGAKGIKVEVSGRLGGAEIARREWYREGRVPLHTLRANIDYSISEAHTTYGVIGVKVWIFKGEILGGMATIEKLEKPSIQKKKQNQGKEGLIMLQPKRTKFRKMHKGRNRGLAS-GTDVNFGVFGLKAIDRGRLTARQIESARRAITRCIKRQGKMWIRIFPDKPITQKPLEVRMGKGKGNVEYWVALVQPGKILYELDGVTEEESREAFRLAAAKLPIRTIFVTKMVM 362          
BLAST of mRNA_P-littoralis_Contig1560.5.1 vs. uniprot
Match: UPI00096B08E4 (uncharacterized protein LOC100635542 n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00096B08E4)

HSP 1 Score: 401 bits (1030), Expect = 8.620e-133
Identity = 207/323 (64.09%), Postives = 250/323 (77.40%), Query Frame = 1
Query:   61 VWYADGPAYAEKLHE-DLKVREYIRKRLAQASVSRIEIERPAQTARITIHTARPGIVIGKKGEDVERLRQQVAKLMGVPVHINIEEIRKPELDANLVAQNVXXXXXXXXXXXXXXXXXXQNAMRLGAQGIKVRVAGRLGGAEIARSETYHEGRVPLHTLRADVDYATAEALTTYGILGVKVWIFKGEVLGAREESAAQQNTQS-RNRGLAHRGSSVSFGEFGLKATGRGRMTARQIEAGRRAMTRHVKRGGQIWIRVFPDKPITSKPLEVRQGKGKGNVEYWVAQIKPGKVLYEMEGVPEELAREAFRLAAAKLPFPTAFVKR 1023
            +W   G  +A +     L VR +IRKRL  ASVSRI IERPA++ARI IHTARPGIVIGKKGED+E LR +++K+MG+ VH+ +EEIRKPE+DA LV++++                   NAMRLGAQG+KVRV+GRL GAEIARSE Y EGRVPLHTLRAD+DY  +EA TTYGI+GVKVWIFKGE+L   +    ++ TQ+ RNRGLA  G+ VSFGE+G+ AT RGR+TARQIEA RRA+TR V+RG ++WIR+FPDKPIT KPLEVRQGKGKGNVEYWVA I+PG++LYEM+GV E LAREAFRLA AKLP  T F+ R
Sbjct:  303 IWRGGGVTFAARPRSFKLAVRSHIRKRLKHASVSRITIERPAKSARIVIHTARPGIVIGKKGEDIESLRNEISKMMGIQVHVAVEEIRKPEIDAYLVSESIANQLERRIMFRRAMRRAVTNAMRLGAQGVKVRVSGRLNGAEIARSEWYREGRVPLHTLRADIDYGFSEAKTTYGIIGVKVWIFKGEILSRAD---LEEKTQAGRNRGLATVGNRVSFGEYGMMATTRGRITARQIEAARRAITRKVRRGAKVWIRIFPDKPITKKPLEVRQGKGKGNVEYWVALIQPGRMLYEMQGVEESLAREAFRLAGAKLPVRTTFINR 622          
BLAST of mRNA_P-littoralis_Contig1560.5.1 vs. uniprot
Match: A0A1U8N0I4_GOSHI (30S ribosomal protein S3, chloroplastic n=1 Tax=Gossypium hirsutum TaxID=3635 RepID=A0A1U8N0I4_GOSHI)

HSP 1 Score: 388 bits (997), Expect = 1.070e-131
Identity = 187/346 (54.05%), Postives = 259/346 (74.86%), Query Frame = 1
Query:    1 MGQKVHPTGLRLGITTEHTSVWYADGPAYAEKLHEDLKVREYIRKRL--AQASVSRIEIERPAQTARITIHTARPGIVIGKKGEDVERLRQQVAKLMGVPVHINIEEIRKPELDANLVAQNVXXXXXXXXXXXXXXXXXXQNAMRLGAQGIKVRVAGRLGGAEIARSETYHEGRVPLHTLRADVDYATAEALTTYGILGVKVWIFKGEVLGAREESAAQQNTQSRNRGLAHRGSSVSFGEFGLKATGRGRMTARQIEAGRRAMTRHVKRGGQIWIRVFPDKPITSKPLEVRQGKGKGNVEYWVAQIKPGKVLYEMEGVPEELAREAFRLAAAKLPFPTAFVKRQVM 1032
            MG+KVHP G+RLG+   H S WYA+   ++  L +D+++R  I  RL  A  ++SRI IER A  A + ++TARPG ++G KG++V++LR +V K+MGV V I+IEEI+ PE+DA ++AQ +                  Q A+R GA+G+K++++GRLGG+EIAR   Y EGRVPLHTLRA++D+   EA T+YG++G+KVW+FKGE +G ++    +Q  + RNRG+A+RG+ V FGEFG+KA    ++T+RQIEAGRRA+TRHVKRGG+IWIRVFPDKPIT KPLEVR GKGKG+VE+WVAQIKPG+++YE+EGV E++A+EA  LAA K+PF T FV++ +M
Sbjct:    1 MGKKVHPIGMRLGVIKNHLSTWYAEQKQFSSLLKKDIEIRNLIESRLNYANINISRICIERTANNASVIVYTARPGRIVGSKGDEVDKLRDEVNKIMGVKVQIDIEEIKTPEIDAKIIAQKIALQLEKRVMFRRVMKRAVQLAIRFGAKGVKIKLSGRLGGSEIARKAWYKEGRVPLHTLRANIDFYKEEAFTSYGVIGIKVWVFKGERIGPKKTKYRKQQ-KGRNRGVANRGNDVKFGEFGMKALVNSKITSRQIEAGRRAITRHVKRGGKIWIRVFPDKPITKKPLEVRMGKGKGSVEFWVAQIKPGRIIYEIEGVNEDVAKEALGLAAQKMPFITQFVEKVIM 345          
BLAST of mRNA_P-littoralis_Contig1560.5.1 vs. uniprot
Match: A0A812IRX3_SYMPI (30S ribosomal protein S3, chloroplastic n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812IRX3_SYMPI)

HSP 1 Score: 416 bits (1069), Expect = 5.260e-131
Identity = 233/316 (73.73%), Postives = 255/316 (80.70%), Query Frame = 1
Query:   37 GITTEHTSVWYADGPAYAEKLHEDLKVREYIRKRLAQASVSRIEIERPAQTARITIHTARPGIVIGKKGEDVERLRQQVAKLMGVPVHINIEEIRKPELDANLVAQNVXXXXXXXXXXXXXXXXXXQNAMRLGAQGIKVRVAGRLGGAEIARSETYHEGRVPLHTLRADVDYATAEALTTYGILGVKVWIFKGEVLGAREESAAQQNTQSRNRGLAHRGSSVSFGEFGLKATGRGRMTARQIEAGRRAMTRHVKRGGQIWIRVFPDKPITSKPLEVRQGKGKGNVEYWVAQIKPGKVLYEMEGVPEELAREAFRLA 984
            GI  +HTSVWYAD   YA  L  DL VR+Y+RKRLA AS+SRI+IERPAQTARITIHTARPGIVIGKKGEDVERLR ++AK MG+PVH+NIEEIRKPELDA LV    XXXXXXXXXXXXXXXX  QNAMRLGA+GIKVRVAGRLGGAEIARSE YHEGRVPLHTLRAD+DY+T EALTTYGI+G+KVWIFKGEV+G                                 A GRGRMTARQIEAGRRAM RH+KRGG+ WIRVFPDKPIT KPLEVRQGKGKG+VEYWVA I+PG+V+YEMEGVPEE+AREAF LA
Sbjct:  732 GIVKDHTSVWYADKKTYAGYLLNDLAVRDYLRKRLADASISRIDIERPAQTARITIHTARPGIVIGKKGEDVERLRVELAKRMGMPVHVNIEEIRKPELDAQLVXXXXXXXXXXXXXXXXXXXXVIQNAMRLGAEGIKVRVAGRLGGAEIARSEVYHEGRVPLHTLRADIDYSTCEALTTYGIIGIKVWIFKGEVIGTA-------------------------------AVGRGRMTARQIEAGRRAMVRHIKRGGKTWIRVFPDKPITKKPLEVRQGKGKGSVEYWVALIQPGRVIYEMEGVPEEVAREAFTLA 1016          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1560.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A340X6L1_LIPVE3.950e-17473.8430S ribosomal protein S3, chloroplastic n=3 Tax=ce... [more]
A0A6L5C9X3_9INSE1.180e-14762.4730S ribosomal protein S3, chloroplastic n=1 Tax=Ep... [more]
UPI00129E63AF1.930e-14662.32uncharacterized protein LOC116252365 n=1 Tax=Nymph... [more]
UPI00189996571.820e-14460.1730S ribosomal protein S3-like n=1 Tax=Dermacentor ... [more]
A0A6A5L4X0_LUPAL7.370e-14463.4630S ribosomal protein S3, chloroplastic n=4 Tax=ce... [more]
A0A8B7P785_HYAAZ1.740e-13861.5830S ribosomal protein S3, chloroplastic n=2 Tax=ce... [more]
A0A420HQS6_9PEZI3.090e-13558.1330S ribosomal protein S3, chloroplastic n=2 Tax=ce... [more]
UPI00096B08E48.620e-13364.09uncharacterized protein LOC100635542 n=1 Tax=Amphi... [more]
A0A1U8N0I4_GOSHI1.070e-13154.0530S ribosomal protein S3, chloroplastic n=1 Tax=Go... [more]
A0A812IRX3_SYMPI5.260e-13173.7330S ribosomal protein S3, chloroplastic n=1 Tax=Sy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1560contigP-littoralis_Contig1560:6465..7560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog118797.XP_007457193.1
PFAMsKH_2,Ribosomal_S3_C
Model size1035
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.48e-175
EggNOG OGsCOG0197@1|root,KOG3422@2759|Eukaryota,39S31@33154|Opisthokonta,3BPN3@33208|Metazoa,3DD65@33213|Bilateria
DescriptionRibosomal protein S3, C-terminal domain
Cds size1035
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789747.3095717-CDS-P-littoralis_Contig1560:6464..71281680789747.3095717-CDS-P-littoralis_Contig1560:6464..7128Pylaiella littoralis U1_48CDSP-littoralis_Contig1560 6465..7128 +
1680789747.325336-CDS-P-littoralis_Contig1560:7189..75601680789747.325336-CDS-P-littoralis_Contig1560:7189..7560Pylaiella littoralis U1_48CDSP-littoralis_Contig1560 7190..7560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1560.5.1prot_P-littoralis_Contig1560.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1560 6465..7560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1560.5.1

>prot_P-littoralis_Contig1560.5.1 ID=prot_P-littoralis_Contig1560.5.1|Name=mRNA_P-littoralis_Contig1560.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=345bp
MGQKVHPTGLRLGITTEHTSVWYADGPAYAEKLHEDLKVREYIRKRLAQA
SVSRIEIERPAQTARITIHTARPGIVIGKKGEDVERLRQQVAKLMGVPVH
INIEEIRKPELDANLVAQNVAQQLERRVQFRRAMKRVMQNAMRLGAQGIK
VRVAGRLGGAEIARSETYHEGRVPLHTLRADVDYATAEALTTYGILGVKV
WIFKGEVLGAREESAAQQNTQSRNRGLAHRGSSVSFGEFGLKATGRGRMT
ARQIEAGRRAMTRHVKRGGQIWIRVFPDKPITSKPLEVRQGKGKGNVEYW
VAQIKPGKVLYEMEGVPEELAREAFRLAAAKLPFPTAFVKRQVM*
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mRNA from alignment at P-littoralis_Contig1560:6465..7560+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1560.5.1 ID=mRNA_P-littoralis_Contig1560.5.1|Name=mRNA_P-littoralis_Contig1560.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1096bp|location=Sequence derived from alignment at P-littoralis_Contig1560:6465..7560+ (Pylaiella littoralis U1_48)
ATGGGTCAAAAGGTACATCCCACAGGACTGAGACTCGGTATCACCACCGA ACATACCTCTGTTTGGTATGCAGACGGTCCAGCTTACGCCGAGAAGCTCC ACGAAGACCTTAAGGTCAGGGAGTACATCCGTAAGAGGCTTGCACAGGCT TCTGTCAGCAGGATTGAAATTGAGCGTCCTGCGCAGACAGCTCGCATCAC GATTCACACGGCGCGTCCGGGTATCGTGATTGGCAAGAAGGGTGAAGACG TAGAGCGCCTCCGTCAGCAAGTGGCCAAGTTGATGGGTGTACCCGTGCAC ATCAACATCGAAGAGATCCGCAAGCCGGAACTCGACGCTAACCTGGTAGC TCAGAATGTGGCTCAGCAGCTGGAGCGTCGTGTTCAGTTCCGTCGTGCGA TGAAGCGCGTCATGCAGAACGCCATGCGCCTCGGTGCCCAGGGCATCAAG GTCCGTGTTGCAGGTCGTCTGGGCGGTGCAGAGATTGCTCGATCTGAGAC GTATCACGAAGGCCGAGTGCCGCTGCATACGCTGCGGGCTGACGTTGATT ACGCTACAGCAGAAGCGTTGACCACGTACGGCATCCTGGGCGTGAAGGTC TGGATCTTTAAAGGTGAAGTGTTGGGTGCGCGTGAGGAAAGTGCGGCTCA GCAAAACACACAGAGTTTTGGGTAAGTAAAAGATGTTACAGCCGAAAAGA ACGAAGTTCAGAAAGCAGCACAAAGGTCGCAATCGCGGTCTGGCGCATCG TGGTAGCTCAGTGTCCTTTGGCGAGTTTGGTTTGAAGGCAACTGGCCGTG GTCGCATGACTGCACGACAGATCGAGGCAGGTCGTCGAGCGATGACCCGC CACGTAAAACGAGGTGGTCAGATCTGGATCCGTGTTTTTCCCGATAAGCC AATTACCAGCAAGCCTCTCGAGGTTCGTCAGGGTAAAGGTAAGGGTAACG TTGAATACTGGGTTGCTCAGATCAAGCCAGGAAAAGTGCTGTACGAAATG GAAGGTGTACCGGAAGAGCTGGCGCGCGAAGCGTTCCGCCTGGCTGCAGC CAAGCTGCCGTTCCCCACCGCCTTCGTTAAGCGTCAGGTGATGTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1560:6465..7560+

>mRNA_P-littoralis_Contig1560.5.1 ID=mRNA_P-littoralis_Contig1560.5.1|Name=mRNA_P-littoralis_Contig1560.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1035bp|location=Sequence derived from alignment at P-littoralis_Contig1560:6465..7560+ (Pylaiella littoralis U1_48)
ATGGGTCAAAAGGTACATCCCACAGGACTGAGACTCGGTATCACCACCGA
ACATACCTCTGTTTGGTATGCAGACGGTCCAGCTTACGCCGAGAAGCTCC
ACGAAGACCTTAAGGTCAGGGAGTACATCCGTAAGAGGCTTGCACAGGCT
TCTGTCAGCAGGATTGAAATTGAGCGTCCTGCGCAGACAGCTCGCATCAC
GATTCACACGGCGCGTCCGGGTATCGTGATTGGCAAGAAGGGTGAAGACG
TAGAGCGCCTCCGTCAGCAAGTGGCCAAGTTGATGGGTGTACCCGTGCAC
ATCAACATCGAAGAGATCCGCAAGCCGGAACTCGACGCTAACCTGGTAGC
TCAGAATGTGGCTCAGCAGCTGGAGCGTCGTGTTCAGTTCCGTCGTGCGA
TGAAGCGCGTCATGCAGAACGCCATGCGCCTCGGTGCCCAGGGCATCAAG
GTCCGTGTTGCAGGTCGTCTGGGCGGTGCAGAGATTGCTCGATCTGAGAC
GTATCACGAAGGCCGAGTGCCGCTGCATACGCTGCGGGCTGACGTTGATT
ACGCTACAGCAGAAGCGTTGACCACGTACGGCATCCTGGGCGTGAAGGTC
TGGATCTTTAAAGGTGAAGTGTTGGGTGCGCGTGAGGAAAGTGCGGCTCA
GCAAAACACACAGAGTCGCAATCGCGGTCTGGCGCATCGTGGTAGCTCAG
TGTCCTTTGGCGAGTTTGGTTTGAAGGCAACTGGCCGTGGTCGCATGACT
GCACGACAGATCGAGGCAGGTCGTCGAGCGATGACCCGCCACGTAAAACG
AGGTGGTCAGATCTGGATCCGTGTTTTTCCCGATAAGCCAATTACCAGCA
AGCCTCTCGAGGTTCGTCAGGGTAAAGGTAAGGGTAACGTTGAATACTGG
GTTGCTCAGATCAAGCCAGGAAAAGTGCTGTACGAAATGGAAGGTGTACC
GGAAGAGCTGGCGCGCGAAGCGTTCCGCCTGGCTGCAGCCAAGCTGCCGT
TCCCCACCGCCTTCGTTAAGCGTCAGGTGATGTAA
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