mRNA_P-littoralis_Contig1560.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1560.4.1
Unique NamemRNA_P-littoralis_Contig1560.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1560.4.1 vs. uniprot
Match: A0A3D0ZY65_9GAMM (50S ribosomal protein L2 n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D0ZY65_9GAMM)

HSP 1 Score: 508 bits (1309), Expect = 2.120e-181
Identity = 250/272 (91.91%), Postives = 263/272 (96.69%), Query Frame = 1
Query:    1 MPVVKAKPTSPGRRFVVKVVNPDLHKGEPYKPLLEKKSKTGGRNNNGRITTRHIGGGHKQKYRVIDFKRNKDGIKATVERLEYDPNRTANIALIKYEDGERRYIIAPKGVKAGDFVQSGDMSPIKPGNCLPLRNIPNGSVVHCVELKAGKGGQMARSAGTSCQVVAKEGRFVTLRMRSGEMRKVLSECRATLGEVSNSEHNLRSLGKAGAKRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGMPTKGYKTRKNKRTDDMIVRRR 816
            MPVVKAKPTSPGRRFVVKVVNP+LHKGEPYKPLLEKKSKTGGRNNNGRITTRHIGGGHKQKYR+IDFKRNKDGIKA VERLEYDPNRTANIAL+KYEDGERRYIIAPKG+K G+ +QSGDMSPIK GNCLP+RNIP GSV+HC+ELK+GKG QMARSAGTS Q+VAKEGR VTLR+RSGEMRKVL+ECRATLGEVSNSEHNLRSLGKAGAKRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGMPTKGYKTRKNKRTD MIVRRR
Sbjct:    1 MPVVKAKPTSPGRRFVVKVVNPELHKGEPYKPLLEKKSKTGGRNNNGRITTRHIGGGHKQKYRIIDFKRNKDGIKALVERLEYDPNRTANIALLKYEDGERRYIIAPKGLKVGEHLQSGDMSPIKLGNCLPMRNIPMGSVIHCIELKSGKGAQMARSAGTSAQLVAKEGRHVTLRLRSGEMRKVLAECRATLGEVSNSEHNLRSLGKAGAKRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGMPTKGYKTRKNKRTDKMIVRRR 272          
BLAST of mRNA_P-littoralis_Contig1560.4.1 vs. uniprot
Match: A0A2E8KBH0_9GAMM (50S ribosomal protein L2 n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8KBH0_9GAMM)

HSP 1 Score: 486 bits (1250), Expect = 2.010e-172
Identity = 237/275 (86.18%), Postives = 258/275 (93.82%), Query Frame = 1
Query:    1 MPVVKAKPTSPGRRFVVKVVNPDLHKGEPYKPLLEKKSKTGGRNNNGRITTRHIGGGHKQKYRVIDFKRNKDGIKATVERLEYDPNRTANIALIKYEDGERRYIIAPKGVKAGDFVQSGDMSPIKPGNCLPLRNIPNGSVVHCVELKAGKGGQMARSAGTSCQVVAKEGRFVTLRMRSGEMRKVLSECRATLGEVSNSEHNLRSLGKAGAKRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGMPTKGYKTRKNKRTDDMIVRRRNKR 825
            MPVVKAKPTS GRRFVVKV NPDLH+GEPYKPLLEKKSKTGGRNNNGRITTRHIGGGHKQKYRV+DFKRNKDGIKA VER+EYDPNRTANIAL+KY DGERRYIIAP+ +  GD ++SGD +PIK GNCL +RNIP GSV+HC+ELK GKG QMARSAGTS Q++AKEGR+VTLR+RSGEMRKVL+ECRATLGEVSN EHNLRSLGKAGAKRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWG+PTKG+KTRKNKRT+DMIVRRR+ R
Sbjct:    1 MPVVKAKPTSAGRRFVVKVTNPDLHRGEPYKPLLEKKSKTGGRNNNGRITTRHIGGGHKQKYRVVDFKRNKDGIKAQVERIEYDPNRTANIALLKYADGERRYIIAPRNLAQGDELESGDNAPIKTGNCLSMRNIPMGSVIHCIELKGGKGAQMARSAGTSAQLIAKEGRYVTLRLRSGEMRKVLAECRATLGEVSNPEHNLRSLGKAGAKRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGVPTKGFKTRKNKRTNDMIVRRRSSR 275          
BLAST of mRNA_P-littoralis_Contig1560.4.1 vs. uniprot
Match: A0A2E7XGN7_9GAMM (50S ribosomal protein L2 n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E7XGN7_9GAMM)

HSP 1 Score: 480 bits (1235), Expect = 3.870e-170
Identity = 234/272 (86.03%), Postives = 254/272 (93.38%), Query Frame = 1
Query:    1 MPVVKAKPTSPGRRFVVKVVNPDLHKGEPYKPLLEKKSKTGGRNNNGRITTRHIGGGHKQKYRVIDFKRNKDGIKATVERLEYDPNRTANIALIKYEDGERRYIIAPKGVKAGDFVQSGDMSPIKPGNCLPLRNIPNGSVVHCVELKAGKGGQMARSAGTSCQVVAKEGRFVTLRMRSGEMRKVLSECRATLGEVSNSEHNLRSLGKAGAKRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGMPTKGYKTRKNKRTDDMIVRRR 816
            MP VKAKPTSPGRRFVVK+ NPDLH+GE +KPLL+KKSKTGGRNN+GRITTRHIGGGHKQKYR+IDFKRNKD +KATVER+EYDPNRTANIAL+KY DGERRYIIAPK + AGD VQSG+ +PIKPGNCLP+RNIP GSV+HCVELK GKG QM RSAGTSCQ+VAKEG  VTLR+RSGEMRKV +ECRA LGEVSNSEHNL SLGKAGAKRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWG+PTKGYKTRKNKRTD+MI+RRR
Sbjct:    1 MPXVKAKPTSPGRRFVVKIANPDLHRGEAHKPLLDKKSKTGGRNNHGRITTRHIGGGHKQKYRIIDFKRNKDNVKATVERIEYDPNRTANIALLKYLDGERRYIIAPKDLSAGDEVQSGNDTPIKPGNCLPMRNIPMGSVIHCVELKPGKGAQMIRSAGTSCQLVAKEGPHVTLRLRSGEMRKVPAECRAVLGEVSNSEHNLTSLGKAGAKRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGLPTKGYKTRKNKRTDNMIIRRR 272          
BLAST of mRNA_P-littoralis_Contig1560.4.1 vs. uniprot
Match: A0A2E3D7M5_9GAMM (50S ribosomal protein L2 n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E3D7M5_9GAMM)

HSP 1 Score: 476 bits (1226), Expect = 9.110e-169
Identity = 229/275 (83.27%), Postives = 257/275 (93.45%), Query Frame = 1
Query:    1 MPVVKAKPTSPGRRFVVKVVNPDLHKGEPYKPLLEKKSKTGGRNNNGRITTRHIGGGHKQKYRVIDFKRNKDGIKATVERLEYDPNRTANIALIKYEDGERRYIIAPKGVKAGDFVQSGDMSPIKPGNCLPLRNIPNGSVVHCVELKAGKGGQMARSAGTSCQVVAKEGRFVTLRMRSGEMRKVLSECRATLGEVSNSEHNLRSLGKAGAKRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGMPTKGYKTRKNKRTDDMIVRRRNKR 825
            MPV K KPTSPGRRFVVKV NPDL KG+PYKPLLEKK+++GGRNNNGRITTRHIGGGHKQ+YRVIDFKR KDGIKAT+E LEYDPNRTANIAL++YEDGERRYI+APK +K G+ ++SG+M PI+ GN LP+RNIP GSV+HC+ELK GKG QM RSAGTS Q++AKEGR+VT+R+RSGEMRKVL++CRATLGEVSNSEHNLRSLGKAGAKRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWG+PTKGYKTRKNKRTD MIVRRR++R
Sbjct:    1 MPVTKMKPTSPGRRFVVKVTNPDLKKGKPYKPLLEKKNRSGGRNNNGRITTRHIGGGHKQRYRVIDFKRRKDGIKATIESLEYDPNRTANIALLRYEDGERRYIVAPKNLKVGEILESGEMVPIRVGNTLPMRNIPMGSVIHCIELKVGKGAQMVRSAGTSAQLLAKEGRYVTIRLRSGEMRKVLADCRATLGEVSNSEHNLRSLGKAGAKRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGVPTKGYKTRKNKRTDQMIVRRRSRR 275          
BLAST of mRNA_P-littoralis_Contig1560.4.1 vs. uniprot
Match: A0A3B9NN68_9GAMM (50S ribosomal protein L2 n=4 Tax=unclassified Gammaproteobacteria TaxID=33811 RepID=A0A3B9NN68_9GAMM)

HSP 1 Score: 474 bits (1221), Expect = 5.660e-168
Identity = 232/273 (84.98%), Postives = 256/273 (93.77%), Query Frame = 1
Query:    1 MPVVKAKPTSPGRRFVVKVVNPDLHKGEPYKPLLEKKSKTGGRNNNGRITTRHIGGGHKQKYRVIDFKRN-KDGIKATVERLEYDPNRTANIALIKYEDGERRYIIAPKGVKAGDFVQSGDMSPIKPGNCLPLRNIPNGSVVHCVELKAGKGGQMARSAGTSCQVVAKEGRFVTLRMRSGEMRKVLSECRATLGEVSNSEHNLRSLGKAGAKRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGMPTKGYKTRKNKRTDDMIVRRR 816
            MPVVKAKPTSPGRRFVVKVV+PDLHKGEP+K L++ K K+GGRNN GRITTRHIGGGHKQKYR+IDFKRN KDGIKA +ERLEYDPNRTANIAL+KY DGER+YIIAPKGV AGD +QSG+ +PIK GNC+P+RNIP GSV+HCVELKAGKG Q+ARSAGTS Q+VAK+GR+VTLR+RSGEMR+ L++CRATLGEVSNSEHNLRSLGKAGA RWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGMPTKGYKTRKNKRTD MI+RRR
Sbjct:    1 MPVVKAKPTSPGRRFVVKVVHPDLHKGEPFKALVQAKPKSGGRNNKGRITTRHIGGGHKQKYRIIDFKRNSKDGIKAVIERLEYDPNRTANIALLKYADGERKYIIAPKGVSAGDEIQSGEGAPIKVGNCMPMRNIPMGSVIHCVELKAGKGAQIARSAGTSVQLVAKDGRYVTLRLRSGEMRRALADCRATLGEVSNSEHNLRSLGKAGATRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGMPTKGYKTRKNKRTDKMIIRRR 273          
BLAST of mRNA_P-littoralis_Contig1560.4.1 vs. uniprot
Match: A0A2D8G7W7_9PROT (50S ribosomal protein L2 n=2 Tax=Bacteria TaxID=2 RepID=A0A2D8G7W7_9PROT)

HSP 1 Score: 474 bits (1220), Expect = 8.040e-168
Identity = 233/273 (85.35%), Postives = 256/273 (93.77%), Query Frame = 1
Query:    1 MPVVKAKPTSPGRRFVVKVVNPDLHKGEPYKPLLEKKSKTGGRNNNGRITTRHIGGGHKQKYRVIDFKRN-KDGIKATVERLEYDPNRTANIALIKYEDGERRYIIAPKGVKAGDFVQSGDMSPIKPGNCLPLRNIPNGSVVHCVELKAGKGGQMARSAGTSCQVVAKEGRFVTLRMRSGEMRKVLSECRATLGEVSNSEHNLRSLGKAGAKRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGMPTKGYKTRKNKRTDDMIVRRR 816
            MPVVK+KPTSPGRRFVVKVV+PDLHKG PYK L+E KSK+GGRNN GRITTRH+GGGHKQKYRVIDF+RN KDGIKATVERLEYDPNRTANIAL+KY DGERRY+IAPK + AGD VQ+G+ SPI+ GNC+PLRN+P GSV+HCVELK GKG Q+ARSAGTS Q+VAKEG++ TLR+RSGEMR+VLS+CRATLGEVSNSEHNLRSLGKAGAKRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGMPTKGYKTR+NKRTD MIVRRR
Sbjct:    1 MPVVKSKPTSPGRRFVVKVVHPDLHKGAPYKGLIEAKSKSGGRNNAGRITTRHVGGGHKQKYRVIDFRRNDKDGIKATVERLEYDPNRTANIALLKYSDGERRYVIAPKNLAAGDVVQAGENSPIRVGNCMPLRNVPMGSVIHCVELKPGKGAQIARSAGTSVQLVAKEGQYCTLRLRSGEMRRVLSDCRATLGEVSNSEHNLRSLGKAGAKRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGMPTKGYKTRRNKRTDKMIVRRR 273          
BLAST of mRNA_P-littoralis_Contig1560.4.1 vs. uniprot
Match: A0A1Z8R737_9GAMM (50S ribosomal protein L2 n=1 Tax=Gammaproteobacteria bacterium TMED34 TaxID=1986761 RepID=A0A1Z8R737_9GAMM)

HSP 1 Score: 472 bits (1214), Expect = 6.840e-167
Identity = 230/272 (84.56%), Postives = 254/272 (93.38%), Query Frame = 1
Query:    1 MPVVKAKPTSPGRRFVVKVVNPDLHKGEPYKPLLEKKSKTGGRNNNGRITTRHIGGGHKQKYRVIDFKRNKDGIKATVERLEYDPNRTANIALIKYEDGERRYIIAPKGVKAGDFVQSGDMSPIKPGNCLPLRNIPNGSVVHCVELKAGKGGQMARSAGTSCQVVAKEGRFVTLRMRSGEMRKVLSECRATLGEVSNSEHNLRSLGKAGAKRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGMPTKGYKTRKNKRTDDMIVRRR 816
            MPVVKAKPTSPGRRF+VKV NPDL++GEPYKPLLEKK+KTGGRNN GRITTRHIGGGHKQKYRVIDF+RNKDGI ATVERLEYDPNRTA+IAL+KY DGERRYI+AP+ V AGD ++SG+ +PI+PGNCLP+RNIP G+V+H VELK GKG QMARSAG SCQ+VAKEG++VTLRMRSGEMRKVL+ECRAT+G V N EHNLRSLGKAGA+RWRGVRP VRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGMPTKGYKTRKNKRTD MIVR+R
Sbjct:    1 MPVVKAKPTSPGRRFLVKVTNPDLYRGEPYKPLLEKKAKTGGRNNAGRITTRHIGGGHKQKYRVIDFRRNKDGIDATVERLEYDPNRTAHIALLKYTDGERRYILAPRDVAAGDTLRSGNDAPIRPGNCLPMRNIPMGTVIHAVELKPGKGAQMARSAGASCQLVAKEGQYVTLRMRSGEMRKVLAECRATIGGVGNWEHNLRSLGKAGARRWRGVRPXVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGMPTKGYKTRKNKRTDKMIVRKR 272          
BLAST of mRNA_P-littoralis_Contig1560.4.1 vs. uniprot
Match: A0A2E3QI92_9GAMM (50S ribosomal protein L2 n=2 Tax=unclassified Gammaproteobacteria TaxID=33811 RepID=A0A2E3QI92_9GAMM)

HSP 1 Score: 471 bits (1212), Expect = 1.240e-166
Identity = 227/275 (82.55%), Postives = 257/275 (93.45%), Query Frame = 1
Query:    1 MPVVKAKPTSPGRRFVVKVVNPDLHKGEPYKPLLEKKSKTGGRNNNGRITTRHIGGGHKQKYRVIDFKRNKDGIKATVERLEYDPNRTANIALIKYEDGERRYIIAPKGVKAGDFVQSGDMSPIKPGNCLPLRNIPNGSVVHCVELKAGKGGQMARSAGTSCQVVAKEGRFVTLRMRSGEMRKVLSECRATLGEVSNSEHNLRSLGKAGAKRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGMPTKGYKTRKNKRTDDMIVRRRNKR 825
            MPV+K+KPTSPGRRFV++V NP+L KG+PYKPLLEKK+K+GGRNN GRITTRHIGGGHK++YR+IDFKRNKDG+KA VE LEYDPNR+ANIAL+KYEDGERRYI+APK +  GDFV+SG++ PIK GN LP+RNIP GSV+HC+ELK GKG Q+ARSAGTS Q++AKEGR VT+R+RSGEMRKVLSECRATLGEVSNSEHNLRSLGKAGA+RWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWG+PTKGYKT KNKRTD MIVRRR+KR
Sbjct:    1 MPVIKSKPTSPGRRFVIQVKNPELKKGKPYKPLLEKKNKSGGRNNKGRITTRHIGGGHKKRYRIIDFKRNKDGLKALVESLEYDPNRSANIALVKYEDGERRYIVAPKNLSVGDFVESGEIVPIKIGNALPMRNIPMGSVIHCIELKIGKGAQVARSAGTSAQLLAKEGRHVTIRLRSGEMRKVLSECRATLGEVSNSEHNLRSLGKAGARRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGVPTKGYKTXKNKRTDKMIVRRRSKR 275          
BLAST of mRNA_P-littoralis_Contig1560.4.1 vs. uniprot
Match: A0A3C0TE13_9GAMM (50S ribosomal protein L2 n=6 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A3C0TE13_9GAMM)

HSP 1 Score: 471 bits (1212), Expect = 1.330e-166
Identity = 233/274 (85.04%), Postives = 251/274 (91.61%), Query Frame = 1
Query:    1 MPVVKAKPTSPGRRFVVKVVNPDLHKGEPYKPLLEKKSKTGGRNNNGRITTRHIGGGHKQKYRVIDFKRNKDGIKATVERLEYDPNRTANIALIKYEDGERRYIIAPKGVKAGDFVQSGDMSPIKPGNCLPLRNIPNGSVVHCVELKAGKGGQMARSAGTSCQVVAKEGRFVTLRMRSGEMRKVLSECRATLGEVSNSEHNLRSLGKAGAKRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGMPTKGYKTRKNKRTDDMIVRRRNK 822
            MPVVKAKPTSPGRRFVVKVV+P+LH GEPYKPL EKKSK+GGRNNNGRITTRHIGGGHKQKYR+ID+KR+K+GI ATVERLEYDPNRTANIAL+KY DGERRYIIAP+ +  GD +QSGD  PI+ GN LPLRN+P GSVVHC+ELK GKG QM RSAGTS Q+VAKEGR VTLR+RSGEMRKVL ECRATLGEVSN EHNLRSLGKAGA RWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWG PTKG+KTRKNKRTD MIVRRR+K
Sbjct:    1 MPVVKAKPTSPGRRFVVKVVHPELHMGEPYKPLTEKKSKSGGRNNNGRITTRHIGGGHKQKYRIIDYKRDKNGITATVERLEYDPNRTANIALLKYADGERRYIIAPRNLAVGDQLQSGDNVPIRSGNSLPLRNVPMGSVVHCIELKPGKGAQMVRSAGTSAQLVAKEGRHVTLRLRSGEMRKVLGECRATLGEVSNPEHNLRSLGKAGASRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGQPTKGHKTRKNKRTDKMIVRRRSK 274          
BLAST of mRNA_P-littoralis_Contig1560.4.1 vs. uniprot
Match: RL2_SACD2 (50S ribosomal protein L2 n=1 Tax=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) TaxID=203122 RepID=RL2_SACD2)

HSP 1 Score: 469 bits (1208), Expect = 5.030e-166
Identity = 232/274 (84.67%), Postives = 249/274 (90.88%), Query Frame = 1
Query:    1 MPVVKAKPTSPGRRFVVKVVNPDLHKGEPYKPLLEKKSKTGGRNNNGRITTRHIGGGHKQKYRVIDFKRNKDGIKATVERLEYDPNRTANIALIKYEDGERRYIIAPKGVKAGDFVQSGDMSPIKPGNCLPLRNIPNGSVVHCVELKAGKGGQMARSAGTSCQVVAKEGRFVTLRMRSGEMRKVLSECRATLGEVSNSEHNLRSLGKAGAKRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWGMPTKGYKTRKNKRTDDMIVRRRNK 822
            MP+VK KPTS GRRFVV VVN DLHKG P+ PLLEKKSK+GGRNNNGRITTRHIGGGHKQ YRVIDF+RNKDGI A VERLEYDPNRTA IAL+ Y DGERRYIIAPKGVKAGD +QSGD +PIKPGN LPLRNIP GSVVHC+E+K GKG Q+ARSAGTS Q+VA+EG++ TLR+RSGEMRK+LSECRATLGEVSNSEHNLRSLGKAGA RWRGVRPTVRGV MNPVDHPHGGGEG+TSGGRHPVSPWG PTKGYKTR NKRTD MIVRRRNK
Sbjct:    1 MPIVKRKPTSAGRRFVVNVVNADLHKGAPHAPLLEKKSKSGGRNNNGRITTRHIGGGHKQHYRVIDFRRNKDGIPAKVERLEYDPNRTAYIALVCYADGERRYIIAPKGVKAGDVIQSGDAAPIKPGNALPLRNIPVGSVVHCIEMKPGKGAQIARSAGTSVQLVAREGQYCTLRLRSGEMRKILSECRATLGEVSNSEHNLRSLGKAGASRWRGVRPTVRGVAMNPVDHPHGGGEGRTSGGRHPVSPWGTPTKGYKTRSNKRTDKMIVRRRNK 274          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1560.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D0ZY65_9GAMM2.120e-18191.9150S ribosomal protein L2 n=2 Tax=Gammaproteobacter... [more]
A0A2E8KBH0_9GAMM2.010e-17286.1850S ribosomal protein L2 n=2 Tax=Gammaproteobacter... [more]
A0A2E7XGN7_9GAMM3.870e-17086.0350S ribosomal protein L2 n=1 Tax=Gammaproteobacter... [more]
A0A2E3D7M5_9GAMM9.110e-16983.2750S ribosomal protein L2 n=1 Tax=Gammaproteobacter... [more]
A0A3B9NN68_9GAMM5.660e-16884.9850S ribosomal protein L2 n=4 Tax=unclassified Gamm... [more]
A0A2D8G7W7_9PROT8.040e-16885.3550S ribosomal protein L2 n=2 Tax=Bacteria TaxID=2 ... [more]
A0A1Z8R737_9GAMM6.840e-16784.5650S ribosomal protein L2 n=1 Tax=Gammaproteobacter... [more]
A0A2E3QI92_9GAMM1.240e-16682.5550S ribosomal protein L2 n=2 Tax=unclassified Gamm... [more]
A0A3C0TE13_9GAMM1.330e-16685.0450S ribosomal protein L2 n=6 Tax=Gammaproteobacter... [more]
RL2_SACD25.030e-16684.6750S ribosomal protein L2 n=1 Tax=Saccharophagus de... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1560contigP-littoralis_Contig1560:4963..5790 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog203122.Sde_0963
Preferred namerplB
PFAMsRibosomal_L2,Ribosomal_L2_C
Model size828
Max annot lvl1236|Gammaproteobacteria
KEGG koko:K02886
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016043,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
Evalue8.25e-167
EggNOG OGsCOG0090@1|root,COG0090@2|Bacteria,1MVTD@1224|Proteobacteria,1RMGR@1236|Gammaproteobacteria,464EJ@72275|Alteromonadaceae
DescriptionOne of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
Cds size828
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789747.2756279-CDS-P-littoralis_Contig1560:4962..57901680789747.2756279-CDS-P-littoralis_Contig1560:4962..5790Pylaiella littoralis U1_48CDSP-littoralis_Contig1560 4963..5790 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1560.4.1prot_P-littoralis_Contig1560.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1560 4963..5790 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1560.4.1

>prot_P-littoralis_Contig1560.4.1 ID=prot_P-littoralis_Contig1560.4.1|Name=mRNA_P-littoralis_Contig1560.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=276bp
MPVVKAKPTSPGRRFVVKVVNPDLHKGEPYKPLLEKKSKTGGRNNNGRIT
TRHIGGGHKQKYRVIDFKRNKDGIKATVERLEYDPNRTANIALIKYEDGE
RRYIIAPKGVKAGDFVQSGDMSPIKPGNCLPLRNIPNGSVVHCVELKAGK
GGQMARSAGTSCQVVAKEGRFVTLRMRSGEMRKVLSECRATLGEVSNSEH
NLRSLGKAGAKRWRGVRPTVRGVVMNPVDHPHGGGEGKTSGGRHPVSPWG
MPTKGYKTRKNKRTDDMIVRRRNKR*
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mRNA from alignment at P-littoralis_Contig1560:4963..5790+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1560.4.1 ID=mRNA_P-littoralis_Contig1560.4.1|Name=mRNA_P-littoralis_Contig1560.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=828bp|location=Sequence derived from alignment at P-littoralis_Contig1560:4963..5790+ (Pylaiella littoralis U1_48)
ATGCCAGTCGTAAAAGCCAAACCAACATCACCGGGTCGACGTTTTGTCGT CAAGGTCGTTAACCCCGACCTTCACAAGGGTGAACCGTACAAGCCGCTAT TGGAGAAGAAATCCAAGACCGGCGGTCGCAACAACAATGGTCGGATTACT ACCCGGCACATTGGTGGTGGTCACAAGCAGAAGTATCGAGTTATCGACTT CAAACGAAACAAAGACGGTATTAAAGCAACCGTAGAAAGACTGGAATACG ACCCCAATCGAACCGCAAACATTGCGCTTATCAAGTACGAAGATGGTGAA CGACGTTACATCATCGCCCCCAAAGGTGTGAAAGCTGGCGACTTTGTTCA ATCCGGTGACATGTCACCCATTAAGCCCGGCAACTGTCTGCCTCTGCGCA ACATCCCTAACGGTAGTGTTGTGCATTGCGTTGAGCTGAAAGCTGGCAAA GGCGGTCAGATGGCTCGCAGTGCTGGTACTTCCTGCCAGGTGGTAGCTAA AGAAGGACGTTTTGTCACGCTGCGTATGCGCTCTGGTGAGATGCGAAAGG TGCTGTCTGAGTGTCGTGCCACGCTGGGTGAAGTATCCAATTCCGAGCAC AACCTGCGCTCACTGGGTAAAGCCGGTGCGAAGCGCTGGAGAGGCGTGCG ACCGACGGTTCGTGGTGTTGTGATGAACCCGGTAGATCACCCTCATGGTG GTGGTGAAGGTAAGACTTCTGGTGGCCGGCATCCGGTTTCACCCTGGGGT ATGCCTACCAAGGGTTACAAGACCCGCAAGAACAAGCGTACCGACGACAT GATTGTTCGTCGTCGTAACAAGCGATAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1560:4963..5790+

>mRNA_P-littoralis_Contig1560.4.1 ID=mRNA_P-littoralis_Contig1560.4.1|Name=mRNA_P-littoralis_Contig1560.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=828bp|location=Sequence derived from alignment at P-littoralis_Contig1560:4963..5790+ (Pylaiella littoralis U1_48)
ATGCCAGTCGTAAAAGCCAAACCAACATCACCGGGTCGACGTTTTGTCGT
CAAGGTCGTTAACCCCGACCTTCACAAGGGTGAACCGTACAAGCCGCTAT
TGGAGAAGAAATCCAAGACCGGCGGTCGCAACAACAATGGTCGGATTACT
ACCCGGCACATTGGTGGTGGTCACAAGCAGAAGTATCGAGTTATCGACTT
CAAACGAAACAAAGACGGTATTAAAGCAACCGTAGAAAGACTGGAATACG
ACCCCAATCGAACCGCAAACATTGCGCTTATCAAGTACGAAGATGGTGAA
CGACGTTACATCATCGCCCCCAAAGGTGTGAAAGCTGGCGACTTTGTTCA
ATCCGGTGACATGTCACCCATTAAGCCCGGCAACTGTCTGCCTCTGCGCA
ACATCCCTAACGGTAGTGTTGTGCATTGCGTTGAGCTGAAAGCTGGCAAA
GGCGGTCAGATGGCTCGCAGTGCTGGTACTTCCTGCCAGGTGGTAGCTAA
AGAAGGACGTTTTGTCACGCTGCGTATGCGCTCTGGTGAGATGCGAAAGG
TGCTGTCTGAGTGTCGTGCCACGCTGGGTGAAGTATCCAATTCCGAGCAC
AACCTGCGCTCACTGGGTAAAGCCGGTGCGAAGCGCTGGAGAGGCGTGCG
ACCGACGGTTCGTGGTGTTGTGATGAACCCGGTAGATCACCCTCATGGTG
GTGGTGAAGGTAAGACTTCTGGTGGCCGGCATCCGGTTTCACCCTGGGGT
ATGCCTACCAAGGGTTACAAGACCCGCAAGAACAAGCGTACCGACGACAT
GATTGTTCGTCGTCGTAACAAGCGATAG
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