mRNA_P-littoralis_Contig156.151.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Match: A0A6H5KV14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV14_9PHAE) HSP 1 Score: 204 bits (520), Expect = 5.200e-60 Identity = 121/294 (41.16%), Postives = 174/294 (59.18%), Query Frame = 1
Query: 1 MDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVRTGI-RNPTANADTTSLVDDVFQQAVQHNLKPGNFGPSTLDFLIRKFAAAWNLTDDQAGIDRIRRFGVPSGTLYKEYLRYFKALVTTVLQSHSLYTPQSSQVQLAVRDSILKQFPGMASDMISPEMFVSASPWGMGDASIPYMWEQLDDPRRANIAAVSGDSFFALPSHASKNTSATSRALASVSGSSASPNSSWQTG----VMNIDT-PRDDTDPFEQSYAAWPL 858
MDK++ L++ + GP P+ F++F SS + V ++L SD +R+Q+ S W GWL LRKRVR + T N T +D F Q V+++L+ GPST F I+K AAAW+ D +GIDR+R FGV +G Y EY+R +KAL TV+ SH + P +QVQ+AVRDS+LKQFP ++ + E +P+G + + MW+ LD A+ AV GD FF++ S ++++SA SRA+AS S ++ SW G VM++D P DD DPF Y+ WPL
Sbjct: 41 MDKLKPEQLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVRAAVVEGQTTNRATLEFLDATFLQ-VENHLRKEPAGPSTYAFFIQKLAAAWDTQDKSSGIDRLRSFGVSNGETYGEYIRRYKALAMTVMVSHHAFKPSDAQVQIAVRDSMLKQFPVVSGQVYKDEQLSMEAPFGRHASCLDDMWDVLDKRAFAHTPAVHGDDFFSVSSTNARSSSAVSRAVAS-SALRSTVTPSWSQGSSAAVMSVDPLPNDDRDPFLLHYSDWPL 331
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Match: A0A6H5JFD5_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD5_9PHAE) HSP 1 Score: 205 bits (521), Expect = 3.270e-57 Identity = 121/294 (41.16%), Postives = 174/294 (59.18%), Query Frame = 1
Query: 1 MDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVRTGI-RNPTANADTTSLVDDVFQQAVQHNLKPGNFGPSTLDFLIRKFAAAWNLTDDQAGIDRIRRFGVPSGTLYKEYLRYFKALVTTVLQSHSLYTPQSSQVQLAVRDSILKQFPGMASDMISPEMFVSASPWGMGDASIPYMWEQLDDPRRANIAAVSGDSFFALPSHASKNTSATSRALASVSGSSASPNSSWQTG----VMNIDT-PRDDTDPFEQSYAAWPL 858
MDK++ L++ + GP P+ F++F SS + V ++L SD +R+Q+ S W GWL LRKRVR + T N T +D F Q V+++L+ GPST F I+K AAAW+ D +GIDR+R FGV +G Y EY+R +KAL TV+ SH + P +QVQ+AVRDS+LKQFP ++ + E +P+G + + MW+ LD A+ AV GD FF++ S ++++SA SRA+AS S ++ SW G VM++D P DD DPF Y+ WPL
Sbjct: 1 MDKLKPEQLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFSSSTWVTGWLPLLRKRVRAAVVEGQTTNRATLEFLDATFLQ-VENHLRKEPAGPSTYAFFIQKLAAAWDTQDKSSGIDRLRSFGVSNGETYGEYIRRYKALAMTVMVSHHAFKPSDAQVQIAVRDSMLKQFPVVSGQVYKDEQLSMEAPFGRHASCLDDMWDVLDKRAFAHTPAVHGDDFFSVSSTNARSSSAVSRAVAS-SALRSTVTPSWSQGSSAAVMSVDPLPNDDRDPFLLHYSDWPL 291
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Match: A0A6H5JI92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI92_9PHAE) HSP 1 Score: 191 bits (484), Expect = 6.320e-54 Identity = 117/294 (39.80%), Postives = 168/294 (57.14%), Query Frame = 1
Query: 1 MDKIRQNDLEAFHNVGPCSPEA--FSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVRTGI-RNPTANADTTSLVDDVFQQAVQHNLKPGNFGPSTLDFLIRKFAAAWNLTDDQAGIDRIRRFGVPSGTLYKEYLRYFKALVTTVLQSHSLYTPQSSQVQLAVRDSILKQFPGMASDMISPEMFVSASPWGMGDASIPYMWEQLDDPRRANIAAVSGDSFFALPSHASKNTSATSRALASVSGSSASPNSSWQTG----VMNIDT-PRDDTDPFEQSYAAWPL 858
MDK++ L++ + P P+A F++F SS + V ++L +D +R+Q+ S W GWL LRKRVR + T N T +D +F Q +H L+ GPST F I+K AAW+ D +GIDR+R FGV +G Y E++R KAL TV SH + P +QVQ+AVRDS+LKQFP ++ + E +P G + + MW+ LD A+ AV GD FF++ S ++++S SRA+AS + SA SW G VM++D P DD DPF ++ WPL
Sbjct: 77 MDKLKPEQLDSVTRL-PLGPDADEFARFASSYKGVVTEILNKNDVKRKQTFNSFTWVTGWLPLLRKRVRAAVFAGQTTNRATLEFLDAIFLQVEKH-LRKEPAGPSTYAFFIQKLVAAWDTQDKSSGIDRLRSFGVSNGEAYGEFIRRPKALAMTVTVSHHAFKPSVAQVQIAVRDSMLKQFPAVSGQVYKDEQLSMEAPLGRHASCLDDMWDALDKRAFAHTPAVHGDDFFSVSSTNARSSSPVSRAVASSALRSAV-TPSWSQGSSAAVMSVDPLPNDDRDPFLLHHSDWPL 367
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Match: A0A6H5KHE6_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE6_9PHAE) HSP 1 Score: 197 bits (500), Expect = 2.270e-53 Identity = 118/294 (40.14%), Postives = 172/294 (58.50%), Query Frame = 1
Query: 1 MDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVRTGI-RNPTANADTTSLVDDVFQQAVQHNLKPGNFGPSTLDFLIRKFAAAWNLTDDQAGIDRIRRFGVPSGTLYKEYLRYFKALVTTVLQSHSLYTPQSSQVQLAVRDSILKQFPGMASDMISPEMFVSASPWGMGDASIPYMWEQLDDPRRANIAAVSGDSFFALPSHASKNTSATSRALASVSGSSASPNSSWQTG----VMNIDT-PRDDTDPFEQSYAAWPL 858
MDK++ L++ + GP P+ F++F SS + V ++L SD +R+Q+ S W GWL LRKRVR + T N T +D F Q V+++L+ GPST F I+K AAAW+ D +GIDR+R FGV +G Y EY+R +KAL TV+ SH + P +QVQ+AVRDS+LK+FP ++ + E +P+G + + MW+ LD A+ AV GD FF++ ++++SA SRA+AS S ++ SW G VM++ P DD DPF Y+ WPL
Sbjct: 776 MDKLKPERLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVRAAVVEGQTTNRATLEFLDATFLQ-VENHLRKEPAGPSTYAFFIQKLAAAWDTQDKSSGIDRLRSFGVSNGETYGEYIRRYKALAMTVMVSHHAFKPSDAQVQIAVRDSMLKKFPVVSGQVYKDEQLSMEAPFGRHASCLDDMWDVLDKRPFAHTPAVQGDYFFSVSFTNARSSSAVSRAVAS-SALRSTVTPSWSQGSSAAVMSVSPLPNDDRDPFLLHYSDWPL 1066
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Match: A0A6H5K8W4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W4_9PHAE) HSP 1 Score: 186 bits (473), Expect = 8.370e-50 Identity = 116/294 (39.46%), Postives = 167/294 (56.80%), Query Frame = 1
Query: 1 MDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVRTGI-RNPTANADTTSLVDDVFQQAVQHNLKPGNFGPSTLDFLIRKFAAAWNLTDDQAGIDRIRRFGVPSGTLYKEYLRYFKALVTTVLQSHSLYTPQSSQVQLAVRDSILKQFPGMASDMISPEMFVSASPWGMGDASIPYMWEQLDDPRRANIAAVSGDSFFALPSHASKNTSATSRALASVSGSSASPNSSWQTG----VMNIDT-PRDDTDPFEQSYAAWPL 858
MDK++ L++ + GP P+ F++F SS + V ++L SD +R+Q+ S W GWL LRKRVR + T N T +D F Q V+++L+ GPST F I+K AAAW+ D +GIDR+R FGV +G Y EY+R +KAL TV+ SH + +QVQ+AVRDS+LKQ ++ + E +P+G + + MW+ LD A+ AV GD FF + S + ++SA SRA+ S S ++ SW G VM++D P DD D F Y+ WPL
Sbjct: 134 MDKLKPEQLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVRAAVVEGQTTNRATLEFLDATFLQ-VENHLRKEPAGPSTYAFFIQKLAAAWDTQDKSSGIDRLRSFGVSNGETYGEYIRRYKALAMTVMVSHHAFKSSDAQVQIAVRDSMLKQLTVVSWQVYKDEQLSMEAPFGRHASCLDDMWDLLDKLAFAHTPAVHGDDFFWVSSTNAWSSSAVSRAVTS-SALRSTVTPSWSQGSSAAVMSVDPLPNDDRDSFLLHYSDWPL 424
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Match: A0A6H5L6I4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6I4_9PHAE) HSP 1 Score: 176 bits (447), Expect = 3.870e-47 Identity = 100/251 (39.84%), Postives = 149/251 (59.36%), Query Frame = 1
Query: 1 MDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVRTGI-RNPTANADTTSLVDDVFQQAVQHNLKPGNFGPSTLDFLIRKFAAAWNLTDDQAGIDRIRRFGVPSGTLYKEYLRYFKALVTTVLQSHSLYTPQSSQVQLAVRDSILKQFPGMASDMISPEMFVSASPWGMGDASIPYMWEQLDDPRRANIAAVSGDSFFALPSHASKNTSATSRALAS 744
MDK++ L++ + GP P+ F++ SS + V ++L SD +R+Q+ S W GWL LRKRVR + T N T +D F Q V+++L+ GPST F I+K AAAW+ D +GIDR+R FGV + Y EY+R ++AL TV+ SH + P +QVQ+AVRDS+LKQFP ++ + E +P+G + + MW+ LD A+ AV GD FF++ S ++++ A SRA+AS
Sbjct: 406 MDKLKPEQLDSVTRLPLGP-DPDEFARSASSCKGVITEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVRAAVVEGQTTNRATLEFLDATFLQ-VENHLRKEPAGPSTYAFFIQKLAAAWDTQDKSSGIDRLRSFGVSNDETYGEYIRRYEALAMTVMVSHHAFKPSDAQVQIAVRDSMLKQFPVVSGQVYKDEQLSMEAPFGRHASCLDDMWDVLDKRAFAHTPAVHGDDFFSVSSTNTRSSCAVSRAVAS 654
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Match: A0A6H5JVY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY6_9PHAE) HSP 1 Score: 178 bits (451), Expect = 8.180e-47 Identity = 115/295 (38.98%), Postives = 169/295 (57.29%), Query Frame = 1
Query: 1 MDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVRTGI-RNPTANADTTSLVDDVFQQAVQHNLKPGNFGPSTLDFLIRKFAAAWNLTDDQAGIDRIRRFGVPSGTLYKEYLRYFKALVTTVLQSHSLYTPQSSQVQLAVRDSILKQFPGMASDMISPEMFVSASPWGMGDASIPYMWEQLDDPRRANIAAVSGDSFFA-LPSHASKNTSATSRALASVSGSSASPNSSWQTG----VMNIDT-PRDDTDPFEQSYAAWPL 858
MDK++ L++ + GP P+ F++F SS + V ++L SD +R+Q+ S W G L LRKRVR + T N DT +D F Q V+++L+ GPST F I+K AAAW+ D +GID +R FGV +G Y EY+R KAL TV+ SH + P +QVQ+AVRDS+LKQFP ++ + E +P+G + + W+ L+ A+ AV D FF+ +P+HA + SA SRA+AS S ++ SW G +M+++ P DD DPF ++ PL
Sbjct: 110 MDKLKPEQLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGRLPLLRKRVRAAVVEGQTTNRDTLEFLDAAFLQ-VENHLRKEPAGPSTYAFFIQKLAAAWDTQDKSSGIDGLRSFGVFNGETYGEYIRRHKALAMTVMVSHHAFKPSDAQVQIAVRDSMLKQFPVVSGQVYKDEQLSKEAPFGRHASCLDDTWDMLNKGAFAHTPAVHEDDFFSVIPTHA-RGPSAVSRAVAS-SALRSTVTPSWSQGSSAALMSVNPLPSDDRDPFLLHHSDSPL 400
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Match: A0A6H5L0G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0G2_9PHAE) HSP 1 Score: 149 bits (375), Expect = 1.030e-39 Identity = 90/221 (40.72%), Postives = 130/221 (58.82%), Query Frame = 1
Query: 229 ADTTSLVDDVFQ------QAVQHNLKPGNFGPSTLDFLIRKFAAAWNLTDDQAGIDRIRRFGVPSGTLYKEYLRYFKALVTTVLQSHSLYTPQSSQVQLAVRDSILKQFPGMASDMISPEMFVSASPWGMGDASIPYMWEQLDDPRRANIAAVSGDSFFALPSHASKNTSATSRALASVSGSSASPNSSWQTG----VMNID-TPRDDTDPFEQSYAAWPL 858
ADT + D + + +V+++L+ GPST F I+K AAAW+ D +GIDR+R FGV +G Y +Y+R KAL TV+ SH + P +QVQ+AVRDS+LKQFP ++ + E +P+G + YMW+ LD A+ AV G+ FF++ S +++ SA SRA+AS S ++ SW G VM++D P DD DPF Y+ WPL
Sbjct: 56 ADTIRIQDKMDKLKPEQLDSVENHLRKEPAGPSTYAFFIQKLAAAWDTQDKSSGIDRLRSFGVSNGETYGDYIRRDKALGMTVMVSHHAFKPSDAQVQIAVRDSMLKQFPVVSGQVYKDEQLSMKAPFGRHALCLDYMWDALDKRAFAHTPAVHGNDFFSVSSTNARSLSAVSRAVAS-SALRSTVTPSWSQGSSAAVMSVDHLPNDDRDPFLLHYSDWPL 275
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Match: A0A6H5JRR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRR3_9PHAE) HSP 1 Score: 156 bits (394), Expect = 3.050e-39 Identity = 99/261 (37.93%), Postives = 144/261 (55.17%), Query Frame = 1
Query: 94 NVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVRTGI-RNPTANADTTSLVDDVFQQAVQHNLKPGNFGPSTLDFLIRKFAAAWNLTDDQAGIDRIRRFGVPSGTLYKEYLRYFKALVTTVLQSHSLYTPQSSQVQLAVRDSILKQFPGMASDMISPEMFVSASPWGMGDASIPYMWEQLDDPRRANIAAVSGDSFFALPSHASKNTSATSRALASVSGSSASPNSSWQTG----VMNIDT-PRDDTDPFEQSYAAWPL 858
N+ LL SD +R+Q+ S W GWL RKRVR + T + T +D F Q ++++L+ GPST I+K AAAW+ D +GIDR+R FG+ G Y E +R KAL V+ SH + P +Q+Q+AVRDS+LKQFP ++ + E + +G + + MW+ LD A+ AV GD F ++ S ++++ A SRA+AS S ++ SW G VM++D P DD DP Y+ WPL
Sbjct: 2 NLLVSLLNKSDVKRKQTFNSSTWVTGWLPLSRKRVRAAVVEGQTTDRATLEFLDATFLQ-IENHLRKEPAGPSTYACFIQKLAAAWDTQDKSSGIDRLRSFGISKGETYGENIRRCKALAMIVMVSHHEFKPSDAQLQIAVRDSMLKQFPVVSGQVYKDEQLSMEALFGRHASCLDDMWDVLDKRAFAHTPAVHGDDFCSVSSTNARSSFAVSRAVAS-SALRSTVTPSWSQGSSAAVMSVDPLPNDDRDPCLLHYSDWPL 260
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Match: A0A6H5L4L9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L9_9PHAE) HSP 1 Score: 151 bits (381), Expect = 3.420e-39 Identity = 81/183 (44.26%), Postives = 113/183 (61.75%), Query Frame = 1
Query: 1 MDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVRTGI-RNPTANADTTSLVDDVFQQAVQHNLKPGNFGPSTLDFLIRKFAAAWNLTDDQAGIDRIRRFGVPSGTLYKEYLRYFKALVTTVLQSHSLYTPQSSQVQLAVRDSILKQFP 540
MDK++ ++ + GP P+ F++F SS + V ++L SD +R+Q+ S W GWL LRKRVR + T N T +D F Q V+++L+ GPST F I+K AAAW+ D +GIDR+R FGV +G Y EY+R +KAL TV+ SH + P +QVQ+AVRDS+LKQFP
Sbjct: 235 MDKLKPEQRDSIIRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVRAAVVEGQTTNRATLEFLDATFLQ-VENHLRKEPAGPSTYAFFIQKLAAAWDTQDKSSGIDRLRSFGVSNGETYGEYIRRYKALAMTVMVSHHAFKPSDAQVQIAVRDSMLKQFP 415 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig156.151.1 >prot_P-littoralis_Contig156.151.1 ID=prot_P-littoralis_Contig156.151.1|Name=mRNA_P-littoralis_Contig156.151.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=286bp MDKIRQNDLEAFHNVGPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILback to top mRNA from alignment at P-littoralis_Contig156:484368..485225+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig156.151.1 ID=mRNA_P-littoralis_Contig156.151.1|Name=mRNA_P-littoralis_Contig156.151.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=858bp|location=Sequence derived from alignment at P-littoralis_Contig156:484368..485225+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig156:484368..485225+ >mRNA_P-littoralis_Contig156.151.1 ID=mRNA_P-littoralis_Contig156.151.1|Name=mRNA_P-littoralis_Contig156.151.1|organism=Pylaiella littoralis U1_48|type=CDS|length=858bp|location=Sequence derived from alignment at P-littoralis_Contig156:484368..485225+ (Pylaiella littoralis U1_48)back to top |