mRNA_P-littoralis_Contig156.151.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.151.1
Unique NamemRNA_P-littoralis_Contig156.151.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Match: A0A6H5KV14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV14_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 5.200e-60
Identity = 121/294 (41.16%), Postives = 174/294 (59.18%), Query Frame = 1
Query:    1 MDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVRTGI-RNPTANADTTSLVDDVFQQAVQHNLKPGNFGPSTLDFLIRKFAAAWNLTDDQAGIDRIRRFGVPSGTLYKEYLRYFKALVTTVLQSHSLYTPQSSQVQLAVRDSILKQFPGMASDMISPEMFVSASPWGMGDASIPYMWEQLDDPRRANIAAVSGDSFFALPSHASKNTSATSRALASVSGSSASPNSSWQTG----VMNIDT-PRDDTDPFEQSYAAWPL 858
            MDK++   L++   +  GP  P+ F++F SS + V  ++L  SD +R+Q+  S  W  GWL  LRKRVR  +    T N  T   +D  F Q V+++L+    GPST  F I+K AAAW+  D  +GIDR+R FGV +G  Y EY+R +KAL  TV+ SH  + P  +QVQ+AVRDS+LKQFP ++  +   E     +P+G   + +  MW+ LD    A+  AV GD FF++ S  ++++SA SRA+AS S   ++   SW  G    VM++D  P DD DPF   Y+ WPL
Sbjct:   41 MDKLKPEQLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVRAAVVEGQTTNRATLEFLDATFLQ-VENHLRKEPAGPSTYAFFIQKLAAAWDTQDKSSGIDRLRSFGVSNGETYGEYIRRYKALAMTVMVSHHAFKPSDAQVQIAVRDSMLKQFPVVSGQVYKDEQLSMEAPFGRHASCLDDMWDVLDKRAFAHTPAVHGDDFFSVSSTNARSSSAVSRAVAS-SALRSTVTPSWSQGSSAAVMSVDPLPNDDRDPFLLHYSDWPL 331          
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Match: A0A6H5JFD5_9PHAE (NADAR domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFD5_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 3.270e-57
Identity = 121/294 (41.16%), Postives = 174/294 (59.18%), Query Frame = 1
Query:    1 MDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVRTGI-RNPTANADTTSLVDDVFQQAVQHNLKPGNFGPSTLDFLIRKFAAAWNLTDDQAGIDRIRRFGVPSGTLYKEYLRYFKALVTTVLQSHSLYTPQSSQVQLAVRDSILKQFPGMASDMISPEMFVSASPWGMGDASIPYMWEQLDDPRRANIAAVSGDSFFALPSHASKNTSATSRALASVSGSSASPNSSWQTG----VMNIDT-PRDDTDPFEQSYAAWPL 858
            MDK++   L++   +  GP  P+ F++F SS + V  ++L  SD +R+Q+  S  W  GWL  LRKRVR  +    T N  T   +D  F Q V+++L+    GPST  F I+K AAAW+  D  +GIDR+R FGV +G  Y EY+R +KAL  TV+ SH  + P  +QVQ+AVRDS+LKQFP ++  +   E     +P+G   + +  MW+ LD    A+  AV GD FF++ S  ++++SA SRA+AS S   ++   SW  G    VM++D  P DD DPF   Y+ WPL
Sbjct:    1 MDKLKPEQLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFSSSTWVTGWLPLLRKRVRAAVVEGQTTNRATLEFLDATFLQ-VENHLRKEPAGPSTYAFFIQKLAAAWDTQDKSSGIDRLRSFGVSNGETYGEYIRRYKALAMTVMVSHHAFKPSDAQVQIAVRDSMLKQFPVVSGQVYKDEQLSMEAPFGRHASCLDDMWDVLDKRAFAHTPAVHGDDFFSVSSTNARSSSAVSRAVAS-SALRSTVTPSWSQGSSAAVMSVDPLPNDDRDPFLLHYSDWPL 291          
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Match: A0A6H5JI92_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI92_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 6.320e-54
Identity = 117/294 (39.80%), Postives = 168/294 (57.14%), Query Frame = 1
Query:    1 MDKIRQNDLEAFHNVGPCSPEA--FSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVRTGI-RNPTANADTTSLVDDVFQQAVQHNLKPGNFGPSTLDFLIRKFAAAWNLTDDQAGIDRIRRFGVPSGTLYKEYLRYFKALVTTVLQSHSLYTPQSSQVQLAVRDSILKQFPGMASDMISPEMFVSASPWGMGDASIPYMWEQLDDPRRANIAAVSGDSFFALPSHASKNTSATSRALASVSGSSASPNSSWQTG----VMNIDT-PRDDTDPFEQSYAAWPL 858
            MDK++   L++   + P  P+A  F++F SS + V  ++L  +D +R+Q+  S  W  GWL  LRKRVR  +    T N  T   +D +F Q  +H L+    GPST  F I+K  AAW+  D  +GIDR+R FGV +G  Y E++R  KAL  TV  SH  + P  +QVQ+AVRDS+LKQFP ++  +   E     +P G   + +  MW+ LD    A+  AV GD FF++ S  ++++S  SRA+AS +  SA    SW  G    VM++D  P DD DPF   ++ WPL
Sbjct:   77 MDKLKPEQLDSVTRL-PLGPDADEFARFASSYKGVVTEILNKNDVKRKQTFNSFTWVTGWLPLLRKRVRAAVFAGQTTNRATLEFLDAIFLQVEKH-LRKEPAGPSTYAFFIQKLVAAWDTQDKSSGIDRLRSFGVSNGEAYGEFIRRPKALAMTVTVSHHAFKPSVAQVQIAVRDSMLKQFPAVSGQVYKDEQLSMEAPLGRHASCLDDMWDALDKRAFAHTPAVHGDDFFSVSSTNARSSSPVSRAVASSALRSAV-TPSWSQGSSAAVMSVDPLPNDDRDPFLLHHSDWPL 367          
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Match: A0A6H5KHE6_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE6_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 2.270e-53
Identity = 118/294 (40.14%), Postives = 172/294 (58.50%), Query Frame = 1
Query:    1 MDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVRTGI-RNPTANADTTSLVDDVFQQAVQHNLKPGNFGPSTLDFLIRKFAAAWNLTDDQAGIDRIRRFGVPSGTLYKEYLRYFKALVTTVLQSHSLYTPQSSQVQLAVRDSILKQFPGMASDMISPEMFVSASPWGMGDASIPYMWEQLDDPRRANIAAVSGDSFFALPSHASKNTSATSRALASVSGSSASPNSSWQTG----VMNIDT-PRDDTDPFEQSYAAWPL 858
            MDK++   L++   +  GP  P+ F++F SS + V  ++L  SD +R+Q+  S  W  GWL  LRKRVR  +    T N  T   +D  F Q V+++L+    GPST  F I+K AAAW+  D  +GIDR+R FGV +G  Y EY+R +KAL  TV+ SH  + P  +QVQ+AVRDS+LK+FP ++  +   E     +P+G   + +  MW+ LD    A+  AV GD FF++    ++++SA SRA+AS S   ++   SW  G    VM++   P DD DPF   Y+ WPL
Sbjct:  776 MDKLKPERLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVRAAVVEGQTTNRATLEFLDATFLQ-VENHLRKEPAGPSTYAFFIQKLAAAWDTQDKSSGIDRLRSFGVSNGETYGEYIRRYKALAMTVMVSHHAFKPSDAQVQIAVRDSMLKKFPVVSGQVYKDEQLSMEAPFGRHASCLDDMWDVLDKRPFAHTPAVQGDYFFSVSFTNARSSSAVSRAVAS-SALRSTVTPSWSQGSSAAVMSVSPLPNDDRDPFLLHYSDWPL 1066          
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Match: A0A6H5K8W4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W4_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 8.370e-50
Identity = 116/294 (39.46%), Postives = 167/294 (56.80%), Query Frame = 1
Query:    1 MDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVRTGI-RNPTANADTTSLVDDVFQQAVQHNLKPGNFGPSTLDFLIRKFAAAWNLTDDQAGIDRIRRFGVPSGTLYKEYLRYFKALVTTVLQSHSLYTPQSSQVQLAVRDSILKQFPGMASDMISPEMFVSASPWGMGDASIPYMWEQLDDPRRANIAAVSGDSFFALPSHASKNTSATSRALASVSGSSASPNSSWQTG----VMNIDT-PRDDTDPFEQSYAAWPL 858
            MDK++   L++   +  GP  P+ F++F SS + V  ++L  SD +R+Q+  S  W  GWL  LRKRVR  +    T N  T   +D  F Q V+++L+    GPST  F I+K AAAW+  D  +GIDR+R FGV +G  Y EY+R +KAL  TV+ SH  +    +QVQ+AVRDS+LKQ   ++  +   E     +P+G   + +  MW+ LD    A+  AV GD FF + S  + ++SA SRA+ S S   ++   SW  G    VM++D  P DD D F   Y+ WPL
Sbjct:  134 MDKLKPEQLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVRAAVVEGQTTNRATLEFLDATFLQ-VENHLRKEPAGPSTYAFFIQKLAAAWDTQDKSSGIDRLRSFGVSNGETYGEYIRRYKALAMTVMVSHHAFKSSDAQVQIAVRDSMLKQLTVVSWQVYKDEQLSMEAPFGRHASCLDDMWDLLDKLAFAHTPAVHGDDFFWVSSTNAWSSSAVSRAVTS-SALRSTVTPSWSQGSSAAVMSVDPLPNDDRDSFLLHYSDWPL 424          
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Match: A0A6H5L6I4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6I4_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 3.870e-47
Identity = 100/251 (39.84%), Postives = 149/251 (59.36%), Query Frame = 1
Query:    1 MDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVRTGI-RNPTANADTTSLVDDVFQQAVQHNLKPGNFGPSTLDFLIRKFAAAWNLTDDQAGIDRIRRFGVPSGTLYKEYLRYFKALVTTVLQSHSLYTPQSSQVQLAVRDSILKQFPGMASDMISPEMFVSASPWGMGDASIPYMWEQLDDPRRANIAAVSGDSFFALPSHASKNTSATSRALAS 744
            MDK++   L++   +  GP  P+ F++  SS + V  ++L  SD +R+Q+  S  W  GWL  LRKRVR  +    T N  T   +D  F Q V+++L+    GPST  F I+K AAAW+  D  +GIDR+R FGV +   Y EY+R ++AL  TV+ SH  + P  +QVQ+AVRDS+LKQFP ++  +   E     +P+G   + +  MW+ LD    A+  AV GD FF++ S  ++++ A SRA+AS
Sbjct:  406 MDKLKPEQLDSVTRLPLGP-DPDEFARSASSCKGVITEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVRAAVVEGQTTNRATLEFLDATFLQ-VENHLRKEPAGPSTYAFFIQKLAAAWDTQDKSSGIDRLRSFGVSNDETYGEYIRRYEALAMTVMVSHHAFKPSDAQVQIAVRDSMLKQFPVVSGQVYKDEQLSMEAPFGRHASCLDDMWDVLDKRAFAHTPAVHGDDFFSVSSTNTRSSCAVSRAVAS 654          
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Match: A0A6H5JVY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVY6_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 8.180e-47
Identity = 115/295 (38.98%), Postives = 169/295 (57.29%), Query Frame = 1
Query:    1 MDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVRTGI-RNPTANADTTSLVDDVFQQAVQHNLKPGNFGPSTLDFLIRKFAAAWNLTDDQAGIDRIRRFGVPSGTLYKEYLRYFKALVTTVLQSHSLYTPQSSQVQLAVRDSILKQFPGMASDMISPEMFVSASPWGMGDASIPYMWEQLDDPRRANIAAVSGDSFFA-LPSHASKNTSATSRALASVSGSSASPNSSWQTG----VMNIDT-PRDDTDPFEQSYAAWPL 858
            MDK++   L++   +  GP  P+ F++F SS + V  ++L  SD +R+Q+  S  W  G L  LRKRVR  +    T N DT   +D  F Q V+++L+    GPST  F I+K AAAW+  D  +GID +R FGV +G  Y EY+R  KAL  TV+ SH  + P  +QVQ+AVRDS+LKQFP ++  +   E     +P+G   + +   W+ L+    A+  AV  D FF+ +P+HA +  SA SRA+AS S   ++   SW  G    +M+++  P DD DPF   ++  PL
Sbjct:  110 MDKLKPEQLDSVTRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGRLPLLRKRVRAAVVEGQTTNRDTLEFLDAAFLQ-VENHLRKEPAGPSTYAFFIQKLAAAWDTQDKSSGIDGLRSFGVFNGETYGEYIRRHKALAMTVMVSHHAFKPSDAQVQIAVRDSMLKQFPVVSGQVYKDEQLSKEAPFGRHASCLDDTWDMLNKGAFAHTPAVHEDDFFSVIPTHA-RGPSAVSRAVAS-SALRSTVTPSWSQGSSAALMSVNPLPSDDRDPFLLHHSDSPL 400          
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Match: A0A6H5L0G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0G2_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 1.030e-39
Identity = 90/221 (40.72%), Postives = 130/221 (58.82%), Query Frame = 1
Query:  229 ADTTSLVDDVFQ------QAVQHNLKPGNFGPSTLDFLIRKFAAAWNLTDDQAGIDRIRRFGVPSGTLYKEYLRYFKALVTTVLQSHSLYTPQSSQVQLAVRDSILKQFPGMASDMISPEMFVSASPWGMGDASIPYMWEQLDDPRRANIAAVSGDSFFALPSHASKNTSATSRALASVSGSSASPNSSWQTG----VMNID-TPRDDTDPFEQSYAAWPL 858
            ADT  + D + +       +V+++L+    GPST  F I+K AAAW+  D  +GIDR+R FGV +G  Y +Y+R  KAL  TV+ SH  + P  +QVQ+AVRDS+LKQFP ++  +   E     +P+G     + YMW+ LD    A+  AV G+ FF++ S  +++ SA SRA+AS S   ++   SW  G    VM++D  P DD DPF   Y+ WPL
Sbjct:   56 ADTIRIQDKMDKLKPEQLDSVENHLRKEPAGPSTYAFFIQKLAAAWDTQDKSSGIDRLRSFGVSNGETYGDYIRRDKALGMTVMVSHHAFKPSDAQVQIAVRDSMLKQFPVVSGQVYKDEQLSMKAPFGRHALCLDYMWDALDKRAFAHTPAVHGNDFFSVSSTNARSLSAVSRAVAS-SALRSTVTPSWSQGSSAAVMSVDHLPNDDRDPFLLHYSDWPL 275          
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Match: A0A6H5JRR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRR3_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 3.050e-39
Identity = 99/261 (37.93%), Postives = 144/261 (55.17%), Query Frame = 1
Query:   94 NVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVRTGI-RNPTANADTTSLVDDVFQQAVQHNLKPGNFGPSTLDFLIRKFAAAWNLTDDQAGIDRIRRFGVPSGTLYKEYLRYFKALVTTVLQSHSLYTPQSSQVQLAVRDSILKQFPGMASDMISPEMFVSASPWGMGDASIPYMWEQLDDPRRANIAAVSGDSFFALPSHASKNTSATSRALASVSGSSASPNSSWQTG----VMNIDT-PRDDTDPFEQSYAAWPL 858
            N+   LL  SD +R+Q+  S  W  GWL   RKRVR  +    T +  T   +D  F Q ++++L+    GPST    I+K AAAW+  D  +GIDR+R FG+  G  Y E +R  KAL   V+ SH  + P  +Q+Q+AVRDS+LKQFP ++  +   E     + +G   + +  MW+ LD    A+  AV GD F ++ S  ++++ A SRA+AS S   ++   SW  G    VM++D  P DD DP    Y+ WPL
Sbjct:    2 NLLVSLLNKSDVKRKQTFNSSTWVTGWLPLSRKRVRAAVVEGQTTDRATLEFLDATFLQ-IENHLRKEPAGPSTYACFIQKLAAAWDTQDKSSGIDRLRSFGISKGETYGENIRRCKALAMIVMVSHHEFKPSDAQLQIAVRDSMLKQFPVVSGQVYKDEQLSMEALFGRHASCLDDMWDVLDKRAFAHTPAVHGDDFCSVSSTNARSSFAVSRAVAS-SALRSTVTPSWSQGSSAAVMSVDPLPNDDRDPCLLHYSDWPL 260          
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Match: A0A6H5L4L9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4L9_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 3.420e-39
Identity = 81/183 (44.26%), Postives = 113/183 (61.75%), Query Frame = 1
Query:    1 MDKIRQNDLEAFHNV--GPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSILSERWAPGWLHHLRKRVRTGI-RNPTANADTTSLVDDVFQQAVQHNLKPGNFGPSTLDFLIRKFAAAWNLTDDQAGIDRIRRFGVPSGTLYKEYLRYFKALVTTVLQSHSLYTPQSSQVQLAVRDSILKQFP 540
            MDK++    ++   +  GP  P+ F++F SS + V  ++L  SD +R+Q+  S  W  GWL  LRKRVR  +    T N  T   +D  F Q V+++L+    GPST  F I+K AAAW+  D  +GIDR+R FGV +G  Y EY+R +KAL  TV+ SH  + P  +QVQ+AVRDS+LKQFP
Sbjct:  235 MDKLKPEQRDSIIRLPLGP-DPDEFARFASSCKGVVTEILNKSDVKRKQTFNSSTWVTGWLPLLRKRVRAAVVEGQTTNRATLEFLDATFLQ-VENHLRKEPAGPSTYAFFIQKLAAAWDTQDKSSGIDRLRSFGVSNGETYGEYIRRYKALAMTVMVSHHAFKPSDAQVQIAVRDSMLKQFP 415          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KV14_9PHAE5.200e-6041.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFD5_9PHAE3.270e-5741.16NADAR domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5JI92_9PHAE6.320e-5439.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHE6_9PHAE2.270e-5340.14Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5K8W4_9PHAE8.370e-5039.46Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L6I4_9PHAE3.870e-4739.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVY6_9PHAE8.180e-4738.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0G2_9PHAE1.030e-3940.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRR3_9PHAE3.050e-3937.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4L9_9PHAE3.420e-3944.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:484368..485225 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size860
Hectar predicted targeting categoryother localisation
Exons1
Cds size858
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789747.1206572-CDS-P-littoralis_Contig156:484367..4852251680789747.1206572-CDS-P-littoralis_Contig156:484367..485225Pylaiella littoralis U1_48CDSP-littoralis_Contig156 484368..485225 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.151.1prot_P-littoralis_Contig156.151.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 484368..485225 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.151.1

>prot_P-littoralis_Contig156.151.1 ID=prot_P-littoralis_Contig156.151.1|Name=mRNA_P-littoralis_Contig156.151.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=286bp
MDKIRQNDLEAFHNVGPCSPEAFSQFVSSLRNVTNDLLTLSDSQREQSIL
SERWAPGWLHHLRKRVRTGIRNPTANADTTSLVDDVFQQAVQHNLKPGNF
GPSTLDFLIRKFAAAWNLTDDQAGIDRIRRFGVPSGTLYKEYLRYFKALV
TTVLQSHSLYTPQSSQVQLAVRDSILKQFPGMASDMISPEMFVSASPWGM
GDASIPYMWEQLDDPRRANIAAVSGDSFFALPSHASKNTSATSRALASVS
GSSASPNSSWQTGVMNIDTPRDDTDPFEQSYAAWPL
back to top

mRNA from alignment at P-littoralis_Contig156:484368..485225+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.151.1 ID=mRNA_P-littoralis_Contig156.151.1|Name=mRNA_P-littoralis_Contig156.151.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=858bp|location=Sequence derived from alignment at P-littoralis_Contig156:484368..485225+ (Pylaiella littoralis U1_48)
ATGGACAAGATTCGGCAAAATGATTTGGAGGCTTTTCATAATGTTGGGCC TTGCAGCCCTGAGGCGTTCTCTCAATTTGTTTCTTCCCTTCGCAACGTGA CCAACGATTTGTTGACTTTGAGTGACAGTCAACGCGAGCAATCCATCCTC TCCGAACGATGGGCGCCGGGTTGGTTGCACCACTTGCGCAAGCGAGTGCG CACTGGCATCCGCAACCCTACCGCCAACGCCGACACTACTTCGCTTGTCG ACGACGTTTTTCAACAGGCCGTACAACACAATCTGAAGCCCGGCAACTTC GGACCAAGCACTTTGGACTTTTTGATCCGGAAGTTCGCCGCTGCGTGGAA CCTGACGGATGACCAAGCGGGCATTGATCGCATCCGGCGATTTGGCGTTC CCTCTGGAACGTTGTACAAGGAATACTTGCGTTATTTCAAGGCTTTGGTC ACCACTGTTTTGCAGTCTCATAGCCTGTACACGCCGCAATCGAGTCAAGT TCAACTAGCTGTCAGAGATTCAATCCTCAAACAGTTCCCGGGGATGGCTT CTGATATGATTTCGCCGGAGATGTTTGTCAGTGCTTCGCCTTGGGGGATG GGTGATGCGTCCATTCCATACATGTGGGAACAATTAGACGACCCGAGAAG GGCAAACATCGCCGCGGTCAGCGGTGATTCTTTTTTTGCGTTGCCTTCGC ATGCCTCAAAAAATACATCGGCAACATCTCGCGCTTTAGCTAGCGTTTCT GGTTCTTCTGCGTCGCCCAACAGCTCCTGGCAGACTGGAGTGATGAACAT CGACACACCGCGTGACGATACCGACCCCTTCGAACAGTCTTATGCAGCTT GGCCTTTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig156:484368..485225+

>mRNA_P-littoralis_Contig156.151.1 ID=mRNA_P-littoralis_Contig156.151.1|Name=mRNA_P-littoralis_Contig156.151.1|organism=Pylaiella littoralis U1_48|type=CDS|length=858bp|location=Sequence derived from alignment at P-littoralis_Contig156:484368..485225+ (Pylaiella littoralis U1_48)
ATGGACAAGATTCGGCAAAATGATTTGGAGGCTTTTCATAATGTTGGGCC
TTGCAGCCCTGAGGCGTTCTCTCAATTTGTTTCTTCCCTTCGCAACGTGA
CCAACGATTTGTTGACTTTGAGTGACAGTCAACGCGAGCAATCCATCCTC
TCCGAACGATGGGCGCCGGGTTGGTTGCACCACTTGCGCAAGCGAGTGCG
CACTGGCATCCGCAACCCTACCGCCAACGCCGACACTACTTCGCTTGTCG
ACGACGTTTTTCAACAGGCCGTACAACACAATCTGAAGCCCGGCAACTTC
GGACCAAGCACTTTGGACTTTTTGATCCGGAAGTTCGCCGCTGCGTGGAA
CCTGACGGATGACCAAGCGGGCATTGATCGCATCCGGCGATTTGGCGTTC
CCTCTGGAACGTTGTACAAGGAATACTTGCGTTATTTCAAGGCTTTGGTC
ACCACTGTTTTGCAGTCTCATAGCCTGTACACGCCGCAATCGAGTCAAGT
TCAACTAGCTGTCAGAGATTCAATCCTCAAACAGTTCCCGGGGATGGCTT
CTGATATGATTTCGCCGGAGATGTTTGTCAGTGCTTCGCCTTGGGGGATG
GGTGATGCGTCCATTCCATACATGTGGGAACAATTAGACGACCCGAGAAG
GGCAAACATCGCCGCGGTCAGCGGTGATTCTTTTTTTGCGTTGCCTTCGC
ATGCCTCAAAAAATACATCGGCAACATCTCGCGCTTTAGCTAGCGTTTCT
GGTTCTTCTGCGTCGCCCAACAGCTCCTGGCAGACTGGAGTGATGAACAT
CGACACACCGCGTGACGATACCGACCCCTTCGAACAGTCTTATGCAGCTT
GGCCTTTG
back to top