mRNA_P-littoralis_Contig156.147.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.147.1
Unique NamemRNA_P-littoralis_Contig156.147.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig156.147.1 vs. uniprot
Match: B5LWM4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM4_9PHYC)

HSP 1 Score: 299 bits (765), Expect = 6.540e-97
Identity = 169/298 (56.71%), Postives = 212/298 (71.14%), Query Frame = 1
Query:    1 RPRKICFETSTKATMNLIESMDSLTIRVDKDTKKGSVMGRIRMVLGCDSSKATTALSRLVLAHRGDLASQCTQLRINGKGKLTPVANAKTLIEIVWLLAGKKAREFRRQSSEKVCRITGGDSTLVSEIEARHATLQSTEEGRATQVFLLDGREETIEGQAPAKNL--GQKHP-FGSITQRMNRRELSSLSSPAKPPALEQIDMYATCKQKLESVGQFATRDKIEFADRVKNAQRRASGANNMLTAAPVDNSTI--CVARPVDDSIDPETGLIIATHKCSDSVRGPETSICNEAAKMGV 879
            R +K  + +     M+LIESMD  TIRVDK+TK GSV+  IRMVL CDSS A T+L RLVL+H G L  + TQL++NG+GK TPVA+AKTLIEIVWLL G++A  FR Q   K+CR+ GGD++LVSEIEARHATL  TEEGRATQ F L+    TI+     K L  G++   F + T    R   S++ +  K    E+++MY  CK KLESVGQF TRD IEF DRV++AQRRA  A NM+T+ PVD++ +   VARPVDD+ID  TGL +AT +CS+SVRG ETSICNEAAK+G+
Sbjct:    5 RRKKNVWNSQRSFAMDLIESMDGSTIRVDKNTKLGSVIDTIRMVLECDSSNANTSLGRLVLSHPG-LGEKYTQLKVNGRGKPTPVADAKTLIEIVWLLPGRRAHAFRCQRVGKICRLLGGDTSLVSEIEARHATLTGTEEGRATQEFFLNDNHVTIDQPDQVKELRSGEEPSWFKNATAEEKRAFASTMVN--KAIVSEEVEMYDFCKAKLESVGQFTTRDMIEFGDRVRDAQRRALRAGNMMTSTPVDDTVVISAVARPVDDTIDSATGLPLATPECSESVRGVETSICNEAAKLGI 299          
BLAST of mRNA_P-littoralis_Contig156.147.1 vs. uniprot
Match: Q8QN79_ESV1K (EsV-1-211 n=2 Tax=root TaxID=1 RepID=Q8QN79_ESV1K)

HSP 1 Score: 232 bits (591), Expect = 2.500e-69
Identity = 138/294 (46.94%), Postives = 183/294 (62.24%), Query Frame = 1
Query:   73 TIRVDKDTKKGSVMGRIRMVL-GCDSSKATTALSRLVLAHRGD--------------LASQCTQLRINGKGKLTPVANAKTLIEIVWLLAGKKAREFRRQSSEKVCRITGGDSTLVSEIEARHATLQSTEEGRATQVFLLDGREETIEGQAPAKNLGQKHP--FGSITQRMNRRELS-----SLSSPAKPPALEQIDMYATCKQKLESVGQFATRDKIEFADRVKNAQRRASGANNMLTAAP-VDNS--TICVARPVDDSIDPETGLIIATHKCSDSVRGPETSICNEAAKMGV 879
            ++R+D    K S++   R+V  G  S+ A    +R++   R D              +A +   +RING G +TPV++AKT++EI+WLL    A+EFRRQS+E +CR+ GGD +L  EIE R A L+STEEGRA Q F+ D        Q PAK      P  F   T    R  +S     S+    K   L +ID++ TCK++L+SVGQF  RD+IEFADR+K+ QRRA+  +NM+TAAP VD S  ++CVA PVDD+IDPETGL+ AT KCS SVRGPETSIC EA KMG+
Sbjct:  145 SVRIDDGLGKASIIDTTRLVCPGASSAYAAQMFTRVLEKERDDGGNSFMQDAQHPTPIADRVDYIRINGHGNVTPVSDAKTIVEIIWLLPSGAAKEFRRQSAETICRVLGGDISLCGEIEQRCARLRSTEEGRAYQSFVTD--------QGPAKKQRAAMPAWFEYATAEEKRAYISIEATTSIVLAKKALVLGEIDVFKTCKEELKSVGQFDQRDEIEFADRIKDVQRRATRVDNMITAAPTVDTSPVSVCVAMPVDDTIDPETGLLTATPKCSPSVRGPETSICVEAGKMGI 430          
BLAST of mRNA_P-littoralis_Contig156.147.1 vs. uniprot
Match: A0A6H5L5N7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5N7_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 6.310e-67
Identity = 138/294 (46.94%), Postives = 185/294 (62.93%), Query Frame = 1
Query:   73 TIRVDKDTKKGSVMGRIRMVLGCDSSK-ATTALSRLVLAHRGD--------------LASQCTQLRINGKGKLTPVANAKTLIEIVWLLAGKKAREFRRQSSEKVCRITGGDSTLVSEIEARHATLQSTEEGRATQVFLLDGREETIEGQAPAKNLGQKHP--FGSITQRMNRRELSSLSSPAKPPA-----LEQIDMYATCKQKLESVGQFATRDKIEFADRVKNAQRRASGANNMLTAAP-VDNS--TICVARPVDDSIDPETGLIIATHKCSDSVRGPETSICNEAAKMGV 879
            ++R+D    K S++  +R++    S + A    +R++   RGD              +A +   +RING+GK+TPV++AKT++EI+WLL    A+EFRRQS+E +CR+ GGD +L  EIE R A LQSTEEGRA Q F+ D        Q PAK      P  F   T    R  +S  ++ +K  A     L  ID++ TCK+KL+SVGQF  R +IEFADR+K+ QRRA+  +NM+TAAP VD S  ++CVA PVDD+ID ETGL+I T KCS SVRGPETSIC EA KMG+
Sbjct:  145 SVRIDDGLGKASIIDTVRLISPTASPEYAAQMFTRVLQKERGDCGNTSVRDEQTPTPIADRVDYIRINGRGKVTPVSDAKTIVEIIWLLPSGAAKEFRRQSAETICRVLGGDISLCGEIEQRCARLQSTEEGRAYQSFMTD--------QGPAKKQRAAMPARFEYATAEEKRAYISIEATTSKVLAKKALVLRYIDVFETCKEKLKSVGQFDERAQIEFADRIKDVQRRATRVDNMITAAPAVDTSPVSVCVAMPVDDTIDTETGLLIETPKCSPSVRGPETSICVEAGKMGI 430          
BLAST of mRNA_P-littoralis_Contig156.147.1 vs. uniprot
Match: D8LP49_ECTSI (EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP49_ECTSI)

HSP 1 Score: 207 bits (527), Expect = 1.060e-61
Identity = 132/283 (46.64%), Postives = 172/283 (60.78%), Query Frame = 1
Query:   43 MNLIESMDSLTIRVDKDTKKGSVMGRIRMVLGCDSSKATTALSRLVLAHRGDLASQCTQLRINGKGKLTPVANAKTLIEIVWLLAGKKAREFRRQSSEKVCRITGGDSTLVSEIEARHATLQSTEEGRATQVFLLDGREETIE---GQAPAKNLGQKHPFGSITQRMNRRELSSLSSPAKPPALEQIDMYATCKQKLESVG-QFATRDKIEFADRVKNAQRRASGANNMLTAAPVDNSTICVARPVDDSIDPETGLIIATHKCSDSVRGPETSICNEAAKMGV 879
            M+LIESMD  TIR DK TKKGSVM  IRMVL CDSS A TA  RL+ AH  +L S+CT+ ++NGKG  TPVA+AKTLIEIVWLL GKKA  FRRQSSEKVCR+ GGD +LVSEIEARHATLQSTE+GR TQ FLL GREE +E   G         +     + +RM  ++L +     K    +++D      + ++ +G +   R  IE  D V    R+ +          V++  + VA P+    D  T    +TH+ + + RG ET I   ++K+G+
Sbjct:    1 MDLIESMDGATIRADKQTKKGSVMDTIRMVLRCDSSNANTAFGRLLQAHP-ELGSRCTRSKLNGKGNETPVADAKTLIEIVWLLPGKKAHSFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRETQEFLLHGREEAVETFDGMPAGFKYLSETDRAQVAKRMIDQQLKAGDQALKR---KRVDDLVHSYRAIQDIGVRLDGRTLIELRDSVTILSRQNT----------VEDDAVAVATPLLQ--DSNT----STHELASAQRGKETGIVVVSSKIGI 263          
BLAST of mRNA_P-littoralis_Contig156.147.1 vs. uniprot
Match: A0A6H5JW74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW74_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 2.900e-60
Identity = 142/296 (47.97%), Postives = 183/296 (61.82%), Query Frame = 1
Query:    7 RKICFETSTKATMNLIESMDSLTIRVDKDTKKGSVMGRIRMVLGCDSSKATTALSRLVLAHRGDLASQCTQLRINGKGKLTPVANAKTLIEIVWLLAGKKAREFRRQSSEKVCRITGGDSTLVSEIEARHATLQSTEEGRATQVFLLDGREETIEGQAPAKNLGQKHPFGSITQRMN-RRELSSLSSPAKPPALEQ--IDMYATCKQKLESVGQFAT-RDKIEFADRVKNAQRRASGANNMLTAAPVDNSTICVARPV-DDSIDPETGLIIATHKCSDSVRGPETSICNEAAKMGV 879
            RKI  +TST+ATM+LIE+M   TIRVDK+ + GSV+  IRMVLG DSS A T+L+RL+LA+  +L ++CTQLRINGKGK TPVA+AKTLIEIVWLL GKKAREFRRQSSEKVCR+ GGD +LVSEIEARHATLQSTE+GRATQ FLL  REE +E       +     +  +  R    +++  L+      AL++  +D      + L+ +G     R  IE  D V    R+    NN           + +A P+  DS  P       TH+     RG ET I   ++K+G+
Sbjct:  886 RKISLKTSTEATMDLIENMHGATIRVDKNEQVGSVIDTIRMVLGGDSSAANTSLNRLILANE-ELGTRCTQLRINGKGKFTPVADAKTLIEIVWLLPGKKAREFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRATQEFLLGEREEAVE---TFDGMPAGFRYLPVEDRAQFAKQMLELNLEMSKVALKRKRVDDMVQSYRALQDLGVLLDGRTLIELRDNVTILSRQDVMVNN----------AVAIAAPLLHDSTTP-------THELGADQRGKETGIVVVSSKIGI 1160          
BLAST of mRNA_P-littoralis_Contig156.147.1 vs. uniprot
Match: A0A6H5K200_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K200_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 1.630e-59
Identity = 132/297 (44.44%), Postives = 172/297 (57.91%), Query Frame = 1
Query:   73 TIRVDKDTKKGSVMGRIRMVL-GCDSSKATTALSRLVLAHRGD--------------LASQCTQLRINGKGKLTPVANAKTLIEIVWLLAGKKAREFRRQSSEKVCRITGGDSTLVSEIEARHATLQSTEEGRATQVFLLDGREETIEGQAPAKNLGQKHP--FGSITQRMNRRELS-----SLSSPAKPPALEQIDMYATCKQKLESVGQFATRDKIEFADRVKNAQRRASGANNMLTAAP-VDNS--TICVARPVDDSIDPETGLIIATH----KCSDSVRGPETSICNEAAKMG 876
            ++R+D    K S++   R+V  G  S+ A    +R++   R D              +A +   +RING GK+TPV+++KT++EI+WLL    A+EFRRQS+E +CR+ GGD +L  EIE R A LQSTEEGRA Q F+ D        Q PAK      P  F   T    R  +S     S+    K   L  +D++ TCK+KL SVGQF   D+IEFADR+K+ QRRA   +NM+TAAP VD S  ++C A PVDD+IDPETG          K   SVRGPETSIC EA KMG
Sbjct:  145 SVRIDDGCGKESIIDTTRLVCRGAYSAYAAQMFTRVLEEERNDGGSSFMRGEQTPTPIADRVDYIRINGHGKVTPVSDSKTIVEIIWLLPSGSAKEFRRQSAETICRVLGGDISLCGEIEQRCARLQSTEEGRAYQSFVTD--------QGPAKKQRAAMPAWFEYATAEEKRAYISIEATTSIVLAKKALVLRDVDVFETCKEKLNSVGQFDEGDEIEFADRIKDIQRRAKRVDNMITAAPAVDTSPISVCAAMPVDDTIDPETGEKAGQTGKVVKRLPSVRGPETSICVEAGKMG 433          
BLAST of mRNA_P-littoralis_Contig156.147.1 vs. uniprot
Match: Q8QN80_ESV1K (EsV-1-210 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN80_ESV1K)

HSP 1 Score: 196 bits (498), Expect = 1.780e-55
Identity = 112/235 (47.66%), Postives = 156/235 (66.38%), Query Frame = 1
Query:  199 LASQCTQLRINGKGKLTPVANAKTLIEIVWLLAGKKAREFRRQSSEKVCRITGGDSTLVSEIEARHATLQSTEEGRATQVFLLDGREETIEGQAPAK---NLGQKHPFGSITQRMNRRELSSLSSPAKPPALEQIDMYATCKQKLESVGQFATRDKIEFADRVKNAQRRASGANNMLTA-----APVDNSTICVARPVDDSIDPETGLIIATHKCSDSVRGPETSICNEAAKMGV 879
            LA +   L+ING G +TPV++A T IEI+WLL  + AREFR+QS++ + R+ GGD +L +EIE R A LQ+TEEGRA Q  +         G+AP K   +L +   + +  Q    +     +   K   + +I+M+  CK  LESVGQFA RD+IE+ADR+++ QRRAS A+N+L A     A V +S + +A P+D+SIDPETG++IATHK S SVRGPETSIC EAA++G+
Sbjct:  217 LADRVHYLKINGVGHVTPVSDAPTAIEIIWLLPARAAREFRKQSADTIARVLGGDVSLCAEIEQRCARLQNTEEGRAYQSVMT--------GEAPPKKHKSLPEWFEYATSDQ----KSAYVAAKVKKSVVVTEIEMHEICKVGLESVGQFAGRDEIEYADRIRDTQRRASRADNLLGAPAPSPAVVGDSAMLIATPIDNSIDPETGMLIATHKVSASVRGPETSICVEAARLGI 439          
BLAST of mRNA_P-littoralis_Contig156.147.1 vs. uniprot
Match: D8LPL9_ECTSI (EsV-1-210 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL9_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 3.500e-55
Identity = 124/292 (42.47%), Postives = 176/292 (60.27%), Query Frame = 1
Query:   73 TIRVDKDTKKGSVMGRIRMVL-GCDSSKATTALSRLVLAHRGD--------------LASQCTQLRINGKGKLTPVANAKTLIEIVWLLAGKKAREFRRQSSEKVCRITGGDSTLVSEIEARHATLQSTEEGRATQVFLLDGREETIEGQAPAK---NLGQKHPFGSITQRMNRRELSSLSSPAKPPALEQIDMYATCKQKLESVGQFATRDKIEFADRVKNAQRRASGANNMLTA-AP----VDNSTICVARPVDDSIDPETGLIIATHKCSDSVRGPETSICNEAAKMGV 879
            ++RVD++T   S +  I M+  G     A   L+R++                    LA +  +++INGKG  TPV++A T IEI+WLL  + AREFR+QS++ + R+ GGD +L +EIE R A LQ+TE+GRA Q  +         GQAP K   +L +   + +  Q    +     +   K   + +++M+  CK  LESVGQFA RD+IE+ADR+++ QRRAS A+N+L A AP    V +S+  +A P D+SIDPETG +IATHK S SVRGPETSIC EAAK+G+
Sbjct:  160 SVRVDENTGMLSDIDVINMLCPGASPEDAAHMLTRVLEKEAAGGANNHGPTVHGPVALADRIKRIKINGKGNPTPVSDAPTAIEIIWLLPARAAREFRKQSADTIARVLGGDVSLCAEIEQRCARLQNTEDGRAYQSVMT--------GQAPTKKHKSLPEWFEYATSDQ----KSAYVAAKVKKSVVVTELEMHEVCKVGLESVGQFAGRDEIEYADRIRDTQRRASRADNLLGAPAPSPGDVGDSSTLIATPFDNSIDPETGKLIATHKVSASVRGPETSICVEAAKLGI 439          
BLAST of mRNA_P-littoralis_Contig156.147.1 vs. uniprot
Match: A0A835YWG0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWG0_9STRA)

HSP 1 Score: 158 bits (400), Expect = 8.740e-43
Identity = 110/276 (39.86%), Postives = 150/276 (54.35%), Query Frame = 1
Query:   76 IRVDKDTKKGSVMGRIRMVLGCDSSKATTALSRLVLAHRGDLASQCTQLRINGKGKLTPVANAKTLIEIVWLLAGKKAREFRRQSSEKVCRITGGDSTLVSEIEARHATLQSTEEGRATQVFLLDGREETIEGQAPAKNLGQKHPFGSITQRMNRR---ELSSLSSPA-----KPPALEQIDMYATCKQKLESVGQFATRDKIEFADRVKNAQRRASGANNMLTAAPVDNSTICVARPVDDSIDPETGLIIATHKCSDSVRGPETSICNEAAKMGV 879
            IRVD  T KGSV+  I++V  C++S A+T   RL+      + ++CTQLRINGKGKLT  A+AKTL+EIVW L GK AREFRR S++ VCR+ GGD ++V E+EARH  LQST  GRA Q FLL   +E+   +APA+        G + +R N++   +LS +   A     K  A   +D Y    + L S+G    RD+I F+D V+       GA   +  A         A P DD   P       T  C    RG E S+ + ++K  +
Sbjct:   10 IRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDVGTHIGTRCTQLRINGKGKLTFCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVREVEARHHALQSTGGGRAAQDFLLG--DESSGSEAPAEERTLARTIGEVMRRNNKQAELDLSRMRDNASIATKKACAEFAVDSY----EMLRSMGAADDRDRITFSDAVRRIVAEGGGAAGAIVEAG--------AVPADDPTVP-------TSDCDAYYRGEEISMHSVSSKYSL 264          
BLAST of mRNA_P-littoralis_Contig156.147.1 vs. uniprot
Match: B5LWM3_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM3_9PHYC)

HSP 1 Score: 156 bits (394), Expect = 6.580e-42
Identity = 111/282 (39.36%), Postives = 158/282 (56.03%), Query Frame = 1
Query:   49 LIESMDSLTIRVDKDTKKGSVMGRIRMVLGCDSSKATTALSRL---VLAHRGDLASQCTQLRINGKGKLTPVANAKTLIEIVWLLAGKKAREFRRQSSEKVCRITGGDSTLVSEIEARHATLQSTEEGRATQVFLLDGREETIEGQAPAKNLGQKHPFGSITQRMNRRELSSLSSPAKPPALEQ-IDMYATCKQKLESVG-QFATRDKIEFADRVKNAQRRASGANNMLTAAPVDNSTICVARPVDDSIDPETGLIIATHKCSDSVRGPETSICNEAAKMGV 879
            +++++ + TIR+D  T+KGSV+  IRMVL CD+S A TA  RL   +L  R +  + C+ LRINGKG+LTPVANAKTL+EI++ L GK AREFRR+S+ ++CR+ GGD TLV EIE R A L+ST +GR TQ FLL       +       +G ++      +R    E+ +L+   K   +E  I  YA+    L S+G +   R  +E  D V    +R       L+    ++ST  +       +DP+T     TH      RG E+ I   A+KMGV
Sbjct:    4 IVDNVVNATIRIDNATQKGSVIDVIRMVLRCDASSANTAFRRLKDDMLKSRAEFGAACSHLRINGKGRLTPVANAKTLVEIIFSLPGKLAREFRRKSASQICRLLGGDPTLVFEIEQRRAELESTPKGRVTQAFLLGESRHDTDDDFTGMPVGFRY-LEESQRRAVAGEVVALA--LKRQRIEDMIGSYAS----LRSLGVELDPRTMVEIRDNVSLLTKRK------LSIEEREDSTTRL-------VDPKT----PTHVLGREERGNESGIVVVASKMGV 261          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B5LWM4_9PHYC6.540e-9756.71Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q8QN79_ESV1K2.500e-6946.94EsV-1-211 n=2 Tax=root TaxID=1 RepID=Q8QN79_ESV1K[more]
A0A6H5L5N7_9PHAE6.310e-6746.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LP49_ECTSI1.060e-6146.64EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JW74_9PHAE2.900e-6047.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K200_9PHAE1.630e-5944.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q8QN80_ESV1K1.780e-5547.66EsV-1-210 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
D8LPL9_ECTSI3.500e-5542.47EsV-1-210 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A835YWG0_9STRA8.740e-4339.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B5LWM3_9PHYC6.580e-4239.36Uncharacterized protein n=1 Tax=Feldmannia species... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:467403..468281 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LP49
Model size879
Max annot lvl2880.D8LP49|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.74e-62
EggNOG OGs2EUDG@1|root,2SWJG@2759|Eukaryota
Cds size879
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789747.0855262-CDS-P-littoralis_Contig156:467402..4682811680789747.0855262-CDS-P-littoralis_Contig156:467402..468281Pylaiella littoralis U1_48CDSP-littoralis_Contig156 467403..468281 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.147.1prot_P-littoralis_Contig156.147.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 467403..468281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.147.1

>prot_P-littoralis_Contig156.147.1 ID=prot_P-littoralis_Contig156.147.1|Name=mRNA_P-littoralis_Contig156.147.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=293bp
RPRKICFETSTKATMNLIESMDSLTIRVDKDTKKGSVMGRIRMVLGCDSS
KATTALSRLVLAHRGDLASQCTQLRINGKGKLTPVANAKTLIEIVWLLAG
KKAREFRRQSSEKVCRITGGDSTLVSEIEARHATLQSTEEGRATQVFLLD
GREETIEGQAPAKNLGQKHPFGSITQRMNRRELSSLSSPAKPPALEQIDM
YATCKQKLESVGQFATRDKIEFADRVKNAQRRASGANNMLTAAPVDNSTI
CVARPVDDSIDPETGLIIATHKCSDSVRGPETSICNEAAKMGV
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mRNA from alignment at P-littoralis_Contig156:467403..468281-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.147.1 ID=mRNA_P-littoralis_Contig156.147.1|Name=mRNA_P-littoralis_Contig156.147.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=879bp|location=Sequence derived from alignment at P-littoralis_Contig156:467403..468281- (Pylaiella littoralis U1_48)
CGCCCCCGAAAAATATGTTTTGAAACTTCAACTAAAGCAACCATGAACCT CATCGAGAGCATGGATAGCTTGACCATCCGCGTGGACAAAGACACGAAAA AGGGAAGCGTGATGGGCAGGATCCGGATGGTCCTTGGATGCGATTCGAGC AAAGCAACCACCGCCTTAAGCCGACTTGTTCTAGCCCACCGAGGCGACCT CGCCTCTCAATGCACCCAACTCAGAATCAATGGAAAAGGAAAGTTAACAC CAGTCGCCAACGCCAAAACCCTCATCGAAATTGTATGGCTCCTCGCTGGC AAGAAAGCACGCGAGTTCCGTCGCCAGTCATCCGAGAAGGTCTGCCGGAT CACTGGCGGAGACTCAACTCTCGTGTCCGAGATCGAGGCCCGCCACGCTA CCCTTCAGAGCACCGAAGAGGGTCGCGCGACCCAAGTGTTTCTTCTGGAT GGACGCGAGGAAACAATCGAAGGCCAGGCCCCCGCAAAAAATCTCGGTCA GAAGCACCCTTTTGGTTCGATTACGCAACGGATGAACAGAAGAGAGCTTT CATCGCTGTCGTCGCCAGCAAAGCCACCAGCATTGGAACAGATTGACATG TATGCCACGTGCAAACAGAAACTGGAGTCAGTCGGGCAGTTCGCCACACG CGACAAAATCGAGTTCGCCGACAGGGTCAAGAACGCCCAGAGGCGCGCTT CGGGAGCCAACAACATGCTAACAGCCGCGCCTGTCGACAACTCGACCATT TGTGTGGCAAGGCCAGTCGACGACTCAATCGATCCGGAGACGGGCCTGAT CATTGCAACCCACAAGTGCAGTGACAGCGTTCGAGGTCCGGAGACGTCGA TTTGCAACGAAGCTGCGAAAATGGGCGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig156:467403..468281-

>mRNA_P-littoralis_Contig156.147.1 ID=mRNA_P-littoralis_Contig156.147.1|Name=mRNA_P-littoralis_Contig156.147.1|organism=Pylaiella littoralis U1_48|type=CDS|length=879bp|location=Sequence derived from alignment at P-littoralis_Contig156:467403..468281- (Pylaiella littoralis U1_48)
CGCCCCCGAAAAATATGTTTTGAAACTTCAACTAAAGCAACCATGAACCT
CATCGAGAGCATGGATAGCTTGACCATCCGCGTGGACAAAGACACGAAAA
AGGGAAGCGTGATGGGCAGGATCCGGATGGTCCTTGGATGCGATTCGAGC
AAAGCAACCACCGCCTTAAGCCGACTTGTTCTAGCCCACCGAGGCGACCT
CGCCTCTCAATGCACCCAACTCAGAATCAATGGAAAAGGAAAGTTAACAC
CAGTCGCCAACGCCAAAACCCTCATCGAAATTGTATGGCTCCTCGCTGGC
AAGAAAGCACGCGAGTTCCGTCGCCAGTCATCCGAGAAGGTCTGCCGGAT
CACTGGCGGAGACTCAACTCTCGTGTCCGAGATCGAGGCCCGCCACGCTA
CCCTTCAGAGCACCGAAGAGGGTCGCGCGACCCAAGTGTTTCTTCTGGAT
GGACGCGAGGAAACAATCGAAGGCCAGGCCCCCGCAAAAAATCTCGGTCA
GAAGCACCCTTTTGGTTCGATTACGCAACGGATGAACAGAAGAGAGCTTT
CATCGCTGTCGTCGCCAGCAAAGCCACCAGCATTGGAACAGATTGACATG
TATGCCACGTGCAAACAGAAACTGGAGTCAGTCGGGCAGTTCGCCACACG
CGACAAAATCGAGTTCGCCGACAGGGTCAAGAACGCCCAGAGGCGCGCTT
CGGGAGCCAACAACATGCTAACAGCCGCGCCTGTCGACAACTCGACCATT
TGTGTGGCAAGGCCAGTCGACGACTCAATCGATCCGGAGACGGGCCTGAT
CATTGCAACCCACAAGTGCAGTGACAGCGTTCGAGGTCCGGAGACGTCGA
TTTGCAACGAAGCTGCGAAAATGGGCGTG
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