mRNA_P-littoralis_Contig156.144.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.144.1
Unique NamemRNA_P-littoralis_Contig156.144.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig156.144.1 vs. uniprot
Match: UPI0000161E53 (EsV-1-178/222 paralog 1 n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E53)

HSP 1 Score: 736 bits (1901), Expect = 9.640e-263
Identity = 377/515 (73.20%), Postives = 416/515 (80.78%), Query Frame = 1
Query:    1 MERLQNGTALPEPDAKFFRSCLASCINSRGG-NLNTDFDRFSAPTGLPRLEPPKQMNLDQQREHESRRMATSTSTPAEHHTEKRRIVITRWFLRGLLSRGDMKYKKYTTKLYDLSKNIIVGFDGTPETQQDLREKALEMDSGADPGPITEFAQMERDFSTRVCRDKTSLPKITHLNWTFKTYVAEDRRVYEEVMSRSHSQFPGEDKVSREMRCEFVKKILGEESICAPPKDTAPLPICSSGSVFIHIDMKTLRYWGFWHSNDAWWFSNVLRPFSKEADIKCLVNKENVRYASSEQGYLSSLLGSGPDKCPWMIGESFLTGGVQIKLLLVTSEHTRKAFSGSSQLNEAGYNKLSRANAQLENLLKDGGGVYNISSLLESTSISEDIVVMSADPGQAKVINVSSASAGIWAKKDPDIILKSSTCVFGDDYRRDTLASRSDNYETFRRKNQPYGVAIDLLRHEKKRTSCLTTFIQYCKSWCANGPALFQEKLQKGRKFMRFDRFRATQKTLAKIADRY 1542
            MERLQNG+ALPEPD  FF+SCL+SCI SRGG +LN DFDRFS  TGL RL PPK MNLDQQREHE++RMAT+TST A HH EKRRI ITRWFLRG +SRGD+  KKY TKLY+L++ II  FDGTPE  Q LR  +  +D G D   I +FA  E+ FS R   D  S   I HLNW F TYVAE RR+YEE +SRSH   PG+DK  R+ R EFVK  LGEE   APPKDTA LPICS+G+VFI+IDMKTL  WG  HSNDAWW+ +VLRPFSKEA++KCLVNKEN RYASSE GYLSSLL SGPDKCPWMIGESFLT GVQIKLLL T EH RKAFSGSS+LNE GYNKL RA+ QLE+LL +G GVYNISSLL+STSI ED+VVMSADPGQAKVINVSSA A  WAK+DP +ILK+STCVFGDDYRRDTLASRSD YETFRRK QPYGVAID L +EKKRTSCL TFIQYC+ WC NGP LF+E LQ GRKFMRFDRFRATQKTLA IA  Y
Sbjct:    1 MERLQNGSALPEPDRAFFKSCLSSCILSRGGGSLNADFDRFSEITGLTRLVPPKSMNLDQQREHEAQRMATATSTRATHHAEKRRISITRWFLRGRISRGDLDCKKYATKLYNLAEKIITNFDGTPEDTQKLRTMSRAIDPGTDTNIIIDFAWQEKKFSDRDRGDGKSAETIKHLNWMFNTYVAESRRMYEEAVSRSHLFAPGKDKACRKKRDEFVKHELGEEFTYAPPKDTAVLPICSTGAVFIYIDMKTLGSWGLLHSNDAWWYKDVLRPFSKEANVKCLVNKENARYASSEHGYLSSLLESGPDKCPWMIGESFLTDGVQIKLLLKTLEHGRKAFSGSSELNEEGYNKLPRADVQLESLLGEGRGVYNISSLLKSTSIREDVVVMSADPGQAKVINVSSAMARTWAKQDPGVILKTSTCVFGDDYRRDTLASRSDEYETFRRKGQPYGVAIDRLGNEKKRTSCLATFIQYCRRWCVNGPVLFRETLQTGRKFMRFDRFRATQKTLALIAGPY 515          
BLAST of mRNA_P-littoralis_Contig156.144.1 vs. uniprot
Match: UPI0000161E54 (EsV-1-178/222 paralog 2 n=2 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E54)

HSP 1 Score: 741 bits (1914), Expect = 7.040e-262
Identity = 377/515 (73.20%), Postives = 420/515 (81.55%), Query Frame = 1
Query:    1 MERLQNGTALPEPDAKFFRSCLASCINSRGG-NLNTDFDRFSAPTGLPRLEPPKQMNLDQQREHESRRMATSTSTPAEHHTEKRRIVITRWFLRGLLSRGDMKYKKYTTKLYDLSKNIIVGFDGTPETQQDLREKALEMDSGADPGPITEFAQMERDFSTRVCRDKTSLPKITHLNWTFKTYVAEDRRVYEEVMSRSHSQFPGEDKVSREMRCEFVKKILGEESICAPPKDTAPLPICSSGSVFIHIDMKTLRYWGFWHSNDAWWFSNVLRPFSKEADIKCLVNKENVRYASSEQGYLSSLLGSGPDKCPWMIGESFLTGGVQIKLLLVTSEHTRKAFSGSSQLNEAGYNKLSRANAQLENLLKDGGGVYNISSLLESTSISEDIVVMSADPGQAKVINVSSASAGIWAKKDPDIILKSSTCVFGDDYRRDTLASRSDNYETFRRKNQPYGVAIDLLRHEKKRTSCLTTFIQYCKSWCANGPALFQEKLQKGRKFMRFDRFRATQKTLAKIADRY 1542
            MERLQNG+ALPEPD  FF+SCL+SCI SRGG +LN DFDRFS  TGL RL PPK MNLDQQREHE++RMAT+TST A HH EKRRI ITRWFLRG +SRGD+  KKY TKLY+L++ II  FDGTPE  Q LR  +  +D G D   I +FA  E++FS R   D  S   I HLNW F TYVAE RR+YEE +SRSH   PG+DK  R+ R EF+K  LGEE   APPKDTA LPICS+G+VFI+IDMKTL  WG  HSNDAWW+ +VLRPFSKEA++KCLVNKEN RYASSE GYLSSLL SGPDKCPWMIGESFLT GVQIKLLL T EH RKAFSGSS+LNE GYNKL RA+ QLE+LL +G GVYNISSLL+STSI ED+VVMSADPGQAKVINVSSA+A  WAK+DP +ILK+STCVFGDDYRRDTLASRSD YETFRRK QPYGVAID L +EKKRTSCL TFIQYC+ WC NGP LF+E LQ GRKFMRFDRFRATQKTLA IAD+Y
Sbjct:  124 MERLQNGSALPEPDRAFFKSCLSSCILSRGGGSLNADFDRFSEITGLTRLVPPKSMNLDQQREHEAQRMATATSTRATHHAEKRRISITRWFLRGRISRGDLDCKKYATKLYNLAEKIITNFDGTPEDTQKLRTMSRAIDPGTDTNIIIDFAWQEKEFSDRDRGDGKSAETIKHLNWMFNTYVAESRRMYEEAVSRSHLFAPGKDKACRKKRDEFMKHELGEEFTYAPPKDTAVLPICSTGAVFIYIDMKTLGSWGLLHSNDAWWYKDVLRPFSKEANVKCLVNKENARYASSEHGYLSSLLESGPDKCPWMIGESFLTDGVQIKLLLKTLEHGRKAFSGSSELNEKGYNKLPRADVQLESLLGEGRGVYNISSLLKSTSIREDVVVMSADPGQAKVINVSSATARTWAKQDPGVILKTSTCVFGDDYRRDTLASRSDEYETFRRKGQPYGVAIDRLGNEKKRTSCLATFIQYCRRWCVNGPVLFRETLQTGRKFMRFDRFRATQKTLALIADKY 638          
BLAST of mRNA_P-littoralis_Contig156.144.1 vs. uniprot
Match: Q6XLT6_9PHYC (FirrV-1-M1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT6_9PHYC)

HSP 1 Score: 692 bits (1786), Expect = 2.450e-242
Identity = 346/514 (67.32%), Postives = 409/514 (79.57%), Query Frame = 1
Query:    1 MERLQNGTALPEPDAKFFRSCLASCINSRGGNLNTDFDRFSAPTGLPRLEPPKQMNLDQQREHESRRMATSTSTPAEHHTEKRRIVITRWFLRGLLSRGDMKYKKYTTKLYDLSKNIIVGFDGTPETQQDLREKALEMDSGADPGPITEFAQMERDFSTRVCRDKTSLPKITHLNWTFKTYVAEDRRVYEEVMSRSHSQFPGEDKVSREMRCEFVKKILGEESICAPPKDTAPLPICSSGSVFIHIDMKTLRYWGFWHSNDAWWFSNVLRPFSKEADIKCLVNKENVRYASSEQGYLSSLLGSGPDKCPWMIGESFLTGGVQIKLLLVTSEHTRKAFSGSSQLNEAGYNKLSRANAQLENLLKDGGGVYNISSLLESTSISEDIVVMSADPGQAKVINVSSASAGIWAKKDPDIILKSSTCVFGDDYRRDTLASRSDNYETFRRKNQPYGVAIDLLRHEKKRTSCLTTFIQYCKSWCANGPALFQEKLQKGRKFMRFDRFRATQKTLAKIADRY 1542
            MERL++G+ LPEPD KFF SCL+SCI S+GG+LN DFDRFS+ TGL RL PPK +NL QQR+ E+ +MATSTST A HH+EKRRI ITRWFL   +S G+ + K Y TKL+ L+K II  F+GT E +Q LRE A  +DSG DP PI EFA  E++FS     ++   P I HL+W FKTYV+E RR YEEV+SR+HS FPGE+K   + R EF+K+ LG   I APP+DT+ LPICS+GSVFIH+DMKTL+ WG +HSNDAWW+ NVLRPFS+EA+IKCL ++EN RYASSEQGYLSSLL +GP KCPW +GESFLT GVQIKLLLVT EHTR++FSGSSQLNE GY+KL RA+A LE LL+ G GVYNISSL+ES SI  D+VVMSADPGQAKVINV SA++  W KKDP  ILK+STCVFGDDYRR+TLAS SD YET RR+   YG+AID LR EKKRTSCLTTFIQYC+SWCAN  AL  E LQKGR+F+RF R RATQ  LA+IADR+
Sbjct:  134 MERLRDGSTLPEPDVKFFGSCLSSCIRSKGGSLNADFDRFSSLTGLSRLVPPKHLNLGQQRQFEANQMATSTSTRATHHSEKRRISITRWFLWERISGGNSRPKDYATKLFILAKKIITDFEGTEEQKQKLREMAKALDSGMDPEPIIEFALKEKEFSDNFSANQKCAPTIAHLDWMFKTYVSESRRKYEEVLSRAHSLFPGEEKEISKKRNEFMKRELGRGDIIAPPRDTSVLPICSTGSVFIHVDMKTLKSWGLFHSNDAWWYKNVLRPFSREANIKCLRSRENTRYASSEQGYLSSLLDNGPAKCPWFVGESFLTDGVQIKLLLVTLEHTRESFSGSSQLNEEGYSKLPRADAPLETLLEKGRGVYNISSLVESESIRGDLVVMSADPGQAKVINVCSATSETWEKKDPVAILKTSTCVFGDDYRRETLASHSDEYETLRRRGTSYGIAIDRLRDEKKRTSCLTTFIQYCRSWCANSSALMNETLQKGRRFLRFGRHRATQSILARIADRF 647          
BLAST of mRNA_P-littoralis_Contig156.144.1 vs. uniprot
Match: A0A6H5K772_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K772_9PHAE)

HSP 1 Score: 577 bits (1487), Expect = 2.520e-197
Identity = 291/372 (78.23%), Postives = 317/372 (85.22%), Query Frame = 1
Query:  424 ADPGPITEFAQMERDFSTRVCRDKTSLPKITHLNWTFKTYVAEDRRVYEEVMSRSHSQFPGEDKVSREMRCEFVKKILGEESICAPPKDTAPLPICSSGSVFIHIDMKTLRYWGFWHSNDAWWFSNVLRPFSKEADIKCLVNKENVRYASSEQGYLSSLLGSGPDKCPWMIGESFLTGGVQIKLLLVTSEHTRKAFSGSSQLNEAGYNKLSRANAQLENLLKDGGGVYNISSLLESTSISEDIVVMSADPGQAKVINVSSASAGIWAKKDPDIILKSSTCVFGDDYRRDTLASRSDNYETFRRKNQPYGVAIDLLRHEKKRTSCLTTFIQYCKSWCANGPALFQEKLQKGRKFMRFDRFRATQKTLAKIADR 1539
            +D   I +FA+ E+DFS R C D      I HL W F TYVAE RR+YEE +SR+H   PGEDK  R+ R EFVK  LGE+   APPKDTA LPICS+G+VFIHIDMKTL+ WG  HSNDAWW+ +VLRPFSKEA+IKCLVNKEN RYASSE GYLSSLLGSGPDKCPWMIGESFLT GVQIKLLLVT +H RKAFSGSS+LNEAGYNKL RANAQLE+LLK+G GVYNISSLLESTSI ED+VVMSADPGQAKVINVSSA+A  WAK+DP +ILK+STCVFGDDYRRDTLASRSD YETFRRK+QPYGVAID L +EKKRTSCL TFIQYCKSWCANGPALF E LQ GRKFMRFDRFRATQKTLAKIADR
Sbjct:  369 SDTDIIIDFARREKDFSDRDCGDGKIAKTIKHLYWMFNTYVAESRRMYEEAVSRAHLFAPGEDKACRKKRDEFVKHELGEKFTYAPPKDTAVLPICSTGAVFIHIDMKTLKSWGLLHSNDAWWYKDVLRPFSKEANIKCLVNKENARYASSEHGYLSSLLGSGPDKCPWMIGESFLTDGVQIKLLLVTLDHGRKAFSGSSELNEAGYNKLPRANAQLESLLKEGRGVYNISSLLESTSIREDVVVMSADPGQAKVINVSSATASTWAKQDPGVILKTSTCVFGDDYRRDTLASRSDEYETFRRKDQPYGVAIDRLSNEKKRTSCLATFIQYCKSWCANGPALFLETLQTGRKFMRFDRFRATQKTLAKIADR 740          
BLAST of mRNA_P-littoralis_Contig156.144.1 vs. uniprot
Match: A0A6H5JA56_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE)

HSP 1 Score: 534 bits (1375), Expect = 8.230e-180
Identity = 280/417 (67.15%), Postives = 309/417 (74.10%), Query Frame = 1
Query:  292 RGDMKYKKYTTKLYDLSKNIIVGFDGTPETQQDLREKALEMDSGADPGPITEFAQMERDFSTRVCRDKTSLPKITHLNWTFKTYVAEDRRVYEEVMSRSHSQFPGEDKVSREMRCEFVKKILGEESICAPPKDTAPLPICSSGSVFIHIDMKTLRYWGFWHSNDAWWFSNVLRPFSKEADIKCLVNKENVRYASSEQGYLSSLLGSGPDKCPWMIGESFLTGGVQIKLLLVTSEHTRKAFSGSSQLNEAGYNKLSRANAQLENLLKDGGGVYNISSLLESTSISEDIVVMSADPGQAKVINVSSASAGIWAKKDPDIILKSSTCVFGDDYRRDTLASRSDNYETFRRKNQPYGVAIDLLRHEKKRTSCLTTFIQYCKSWCANGPALFQEKLQKGRKFMRFDRFRATQKTLAKIADRY 1542
            RGD+ YKKY TKLYDL+K II  FDGTPE  +DLR+KA  +D G D   I +FA                                                        R  R EFVK  LGEE   APPKDTA LPICS+GSVFI+IDMKTL+ WG  HSNDAWW+ +VLRPFSKEA+IKCL NKEN RYASSE GYLSSLLGSGPDKCPWMIGESFLT GVQIKLLLVT EH RKAF GS+QLNEAGYNKL RA+ QLE+LL++G GVYNISSLL+S SI ED+VVMSADPGQAKVINVSSA+A  WA++DP +IL SSTCVFGDDYRRDTLASRSD YETFRRK+QPYGVAID LR+EKKRTSCL TFI+YCKSWCANG AL  E LQ+ RKF+RFDRFRATQKTLAKIAD+Y
Sbjct:  317 RGDLVYKKYATKLYDLAKKIITEFDGTPEYAEDLRQKAQSIDPGTDIDTILDFA--------------------------------------------------------RNKRYEFVKNELGEEFTYAPPKDTAVLPICSTGSVFIYIDMKTLKSWGLLHSNDAWWYKDVLRPFSKEANIKCLANKENSRYASSEHGYLSSLLGSGPDKCPWMIGESFLTDGVQIKLLLVTLEHGRKAFPGSTQLNEAGYNKLPRADVQLESLLREGRGVYNISSLLDSPSIREDVVVMSADPGQAKVINVSSATARTWARQDPGVILNSSTCVFGDDYRRDTLASRSDKYETFRRKDQPYGVAIDRLRNEKKRTSCLATFIRYCKSWCANGAALLLETLQEARKFLRFDRFRATQKTLAKIADKY 677          
BLAST of mRNA_P-littoralis_Contig156.144.1 vs. uniprot
Match: D8LP46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP46_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 5.910e-69
Identity = 121/142 (85.21%), Postives = 130/142 (91.55%), Query Frame = 1
Query:  763 GFWHSNDAWWFSNVLRPFSKEADIKCLVNKENVRYASSEQGYLSSLLGSGPDKCPWMIGESFLTGGVQIKLLLVTSEHTRKAFSGSSQLNEAGYNKLSRANAQLENLLKDGGGVYNISSLLESTSISEDIVVMSADPGQAKV 1188
            G  HSNDAWW+ +VLRPFSKEA+IKCLVNKEN RYASSE GYLSSL GSGPDKCPWMIGESFLT GVQIKLLLVT EH RKAFSGSS+LNEAGYNKL RA+AQLE+LLK+G GVYNISSLLESTSI ED++VMSADPGQAKV
Sbjct:  579 GLLHSNDAWWYKDVLRPFSKEANIKCLVNKENARYASSEHGYLSSLQGSGPDKCPWMIGESFLTDGVQIKLLLVTLEHGRKAFSGSSELNEAGYNKLPRADAQLESLLKEGRGVYNISSLLESTSIREDVIVMSADPGQAKV 720          
BLAST of mRNA_P-littoralis_Contig156.144.1 vs. uniprot
Match: A0A835YMK0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMK0_9STRA)

HSP 1 Score: 179 bits (454), Expect = 2.530e-45
Identity = 157/538 (29.18%), Postives = 267/538 (49.63%), Query Frame = 1
Query:   10 LQNGTALPEPDAKFFRSCLASC--INSRGGNLNTDFDRFSAPTGLPRLEPPKQMNLDQQREHESRRMATSTSTPAEHHTEKRRIVITRWFLRGLL-SRGDMKYKKYTTKLYDLSKNIIVGFDGTPETQQDLREKALEMDSGADPGPITEFAQMERDFSTRVCRDKTSLP-KITHLNWTFKTYVAEDRRVYEEVMSRSHSQFPG--EDKVSREMRCEFVKKILGEESICAPPKDT-APLPICSSGSVFIHIDMKTL-----RYWGFWHSNDAWWFSNVLRPFSKEADIKCLVNKENVRYASSEQGYLSSL--LGSGPD-KCPWMIGESFLTGGVQIKLLLVTSEHTRKAFSGSSQLNEAGYNKLSRANAQLENLLKDGGGVYNISSLLESTSIS--EDIVVMSADPGQAKVINVSSASAGIWAKKDPDIILKSSTCVFGD---------DYRRDTLASRSDNYETFRRK-NQPYGVAIDLLRHEKKRTSCLTTFIQYCKSWCANGPALFQEKLQKGRKFMRFDRFRATQKTLAKIADRY 1542
            L +   LP  D  FF +CL+ C   ++R   +   F  FSA TG+  +  P      +  E++++ MAT+ +T  + H   RR+ + +W L+ +L SR     K +  ++ +L    I+      +    +RE+   +      G I  F  +E+  +  V    +  P K+ HL    + Y+A+DR  ++ +   +++ FP    +  +++ R    K +L E +  A P++T +PLPI  + + F+ +  K++     +      + D WWF  ++ PFS +A I  L ++ N +YA SE G  +++  +  G D   PWMIG SF T G Q +L L+TS        G   L+EAGYN +S  +  LE +L+ G GVYN+  +     +   + + V   DPGQ  V      +AG   + +   I  ++  +FGD         +++  T   +S N E  RR+ ++PYG A+  L+ E+K T  L TF +YC +W A   A++ E L   R+  RF RFRA Q+ + ++A+R+
Sbjct:   74 LHDDDTLPLADQAFFTACLSCCRSADTRCTTVKQRFAEFSAATGI--VAYPSMPGTTRVFENQAQDMATAANTFIDVHFGDRRLTLVKWGLKVMLRSRVTFTQKVFERRIGELC-TFILSTRSEMDVMAAIREELQRL------GFIGCFDIVEQLCAITVDFYGSDYPSKLRHLLELQELYLADDRLRFDAINRAAYAAFPKLYPEDTNKQAR----KAMLDEWTFYADPRNTMSPLPINHNTATFVRLCKKSICELFPKLKVCIAAGDPWWFKAIIDPFSSKAGIPRLRHEFN-KYARSEHGMFAAMKMVRDGKDIPVPWMIGPSFETDGKQRRLQLITSALDHPGAPGFLHLHEAGYN-VSFIDTTLEEVLEKGDGVYNLRHIYTEAGLQGFDGVTVTPMDPGQKLV------AAGAHIQGEDWRIENAADIMFGDHPRVTFSGVEWQTKTFTLKSQNAEKLRRRADRPYGQALQQLQGERKNTCDLATFTKYCTTWNATSGAIWAEVLTSQRRGHRFLRFRAIQRAVEEVAERF 590          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
UPI0000161E539.640e-26373.20EsV-1-178/222 paralog 1 n=1 Tax=Ectocarpus silicul... [more]
UPI0000161E547.040e-26273.20EsV-1-178/222 paralog 2 n=2 Tax=Ectocarpus silicul... [more]
Q6XLT6_9PHYC2.450e-24267.32FirrV-1-M1 n=1 Tax=Feldmannia irregularis virus a ... [more]
A0A6H5K772_9PHAE2.520e-19778.23DDE_Tnp_1 domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JA56_9PHAE8.230e-18067.15DDE_Tnp_1 domain-containing protein n=1 Tax=Ectoca... [more]
D8LP46_ECTSI5.910e-6985.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YMK0_9STRA2.530e-4529.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:419487..421028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1542
Hectar predicted targeting categoryother localisation
Exons1
Cds size1542
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789747.0132346-CDS-P-littoralis_Contig156:419486..4210281680789747.0132346-CDS-P-littoralis_Contig156:419486..421028Pylaiella littoralis U1_48CDSP-littoralis_Contig156 419487..421028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.144.1prot_P-littoralis_Contig156.144.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 419487..421028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.144.1

>prot_P-littoralis_Contig156.144.1 ID=prot_P-littoralis_Contig156.144.1|Name=mRNA_P-littoralis_Contig156.144.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=514bp
MERLQNGTALPEPDAKFFRSCLASCINSRGGNLNTDFDRFSAPTGLPRLE
PPKQMNLDQQREHESRRMATSTSTPAEHHTEKRRIVITRWFLRGLLSRGD
MKYKKYTTKLYDLSKNIIVGFDGTPETQQDLREKALEMDSGADPGPITEF
AQMERDFSTRVCRDKTSLPKITHLNWTFKTYVAEDRRVYEEVMSRSHSQF
PGEDKVSREMRCEFVKKILGEESICAPPKDTAPLPICSSGSVFIHIDMKT
LRYWGFWHSNDAWWFSNVLRPFSKEADIKCLVNKENVRYASSEQGYLSSL
LGSGPDKCPWMIGESFLTGGVQIKLLLVTSEHTRKAFSGSSQLNEAGYNK
LSRANAQLENLLKDGGGVYNISSLLESTSISEDIVVMSADPGQAKVINVS
SASAGIWAKKDPDIILKSSTCVFGDDYRRDTLASRSDNYETFRRKNQPYG
VAIDLLRHEKKRTSCLTTFIQYCKSWCANGPALFQEKLQKGRKFMRFDRF
RATQKTLAKIADRY
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mRNA from alignment at P-littoralis_Contig156:419487..421028+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.144.1 ID=mRNA_P-littoralis_Contig156.144.1|Name=mRNA_P-littoralis_Contig156.144.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1542bp|location=Sequence derived from alignment at P-littoralis_Contig156:419487..421028+ (Pylaiella littoralis U1_48)
ATGGAACGCCTTCAGAATGGAACAGCGCTCCCCGAGCCGGACGCAAAATT CTTTAGGTCATGCCTGGCTTCGTGCATCAACAGTAGGGGAGGCAACCTCA ACACCGACTTCGACCGTTTTTCCGCGCCGACGGGACTCCCGAGACTCGAA CCTCCTAAACAGATGAACCTTGACCAGCAACGGGAGCACGAGTCAAGGCG CATGGCCACTTCGACGTCCACACCTGCAGAACACCACACGGAAAAGAGGA GGATCGTCATCACGAGGTGGTTTCTTCGTGGATTGTTGTCCAGAGGAGAC ATGAAGTACAAGAAGTACACAACCAAACTCTATGACCTCTCCAAGAATAT CATTGTTGGGTTTGATGGCACACCCGAGACGCAACAAGATCTGCGAGAAA AGGCTCTGGAAATGGACTCCGGTGCGGACCCCGGCCCTATCACTGAGTTC GCACAGATGGAAAGGGATTTTTCCACGCGAGTTTGCCGTGACAAAACAAG CCTACCGAAGATCACGCATCTGAACTGGACGTTCAAAACATACGTCGCCG AAGACCGAAGGGTATACGAAGAGGTCATGTCTCGATCTCACTCGCAATTC CCTGGAGAAGACAAGGTGTCCAGAGAGATGAGGTGTGAGTTCGTAAAGAA GATACTAGGGGAAGAGAGCATCTGTGCTCCACCTAAAGACACCGCCCCGC TACCCATCTGCTCGTCAGGGTCGGTGTTCATCCACATCGACATGAAAACG CTCAGGTACTGGGGCTTCTGGCATTCTAATGATGCCTGGTGGTTCAGCAA CGTTCTCCGGCCTTTCTCGAAAGAGGCAGACATCAAGTGTCTCGTGAACA AGGAGAACGTCAGGTACGCTTCGAGCGAACAGGGGTATCTCTCGAGTCTG TTGGGAAGTGGACCGGACAAGTGCCCCTGGATGATCGGTGAGAGCTTCTT GACGGGCGGTGTACAGATCAAGCTGCTTCTTGTTACGTCGGAACATACGA GGAAGGCATTCTCTGGGTCCAGCCAGCTGAACGAAGCGGGGTACAATAAA TTGTCCCGGGCTAACGCTCAGCTAGAAAATCTGCTGAAAGATGGGGGGGG GGTGTACAACATATCGAGCCTTCTGGAGTCGACAAGCATCAGTGAAGACA TCGTGGTGATGTCGGCAGACCCGGGACAGGCTAAGGTGATCAACGTCTCT TCGGCTTCGGCCGGAATTTGGGCGAAGAAGGATCCGGACATTATTCTCAA AAGTTCGACGTGTGTGTTCGGGGACGACTATCGTCGTGATACTCTTGCAT CACGTTCAGACAACTATGAGACTTTTAGGCGGAAAAATCAGCCATACGGA GTGGCAATCGATCTTCTGCGGCACGAGAAGAAGCGGACTTCTTGTCTCAC GACGTTCATACAGTACTGCAAGAGTTGGTGCGCAAACGGGCCGGCGTTAT TCCAAGAGAAGTTACAGAAAGGAAGGAAATTCATGCGTTTTGATCGTTTC AGAGCTACCCAGAAGACGCTTGCTAAGATAGCGGACAGGTAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig156:419487..421028+

>mRNA_P-littoralis_Contig156.144.1 ID=mRNA_P-littoralis_Contig156.144.1|Name=mRNA_P-littoralis_Contig156.144.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1542bp|location=Sequence derived from alignment at P-littoralis_Contig156:419487..421028+ (Pylaiella littoralis U1_48)
ATGGAACGCCTTCAGAATGGAACAGCGCTCCCCGAGCCGGACGCAAAATT
CTTTAGGTCATGCCTGGCTTCGTGCATCAACAGTAGGGGAGGCAACCTCA
ACACCGACTTCGACCGTTTTTCCGCGCCGACGGGACTCCCGAGACTCGAA
CCTCCTAAACAGATGAACCTTGACCAGCAACGGGAGCACGAGTCAAGGCG
CATGGCCACTTCGACGTCCACACCTGCAGAACACCACACGGAAAAGAGGA
GGATCGTCATCACGAGGTGGTTTCTTCGTGGATTGTTGTCCAGAGGAGAC
ATGAAGTACAAGAAGTACACAACCAAACTCTATGACCTCTCCAAGAATAT
CATTGTTGGGTTTGATGGCACACCCGAGACGCAACAAGATCTGCGAGAAA
AGGCTCTGGAAATGGACTCCGGTGCGGACCCCGGCCCTATCACTGAGTTC
GCACAGATGGAAAGGGATTTTTCCACGCGAGTTTGCCGTGACAAAACAAG
CCTACCGAAGATCACGCATCTGAACTGGACGTTCAAAACATACGTCGCCG
AAGACCGAAGGGTATACGAAGAGGTCATGTCTCGATCTCACTCGCAATTC
CCTGGAGAAGACAAGGTGTCCAGAGAGATGAGGTGTGAGTTCGTAAAGAA
GATACTAGGGGAAGAGAGCATCTGTGCTCCACCTAAAGACACCGCCCCGC
TACCCATCTGCTCGTCAGGGTCGGTGTTCATCCACATCGACATGAAAACG
CTCAGGTACTGGGGCTTCTGGCATTCTAATGATGCCTGGTGGTTCAGCAA
CGTTCTCCGGCCTTTCTCGAAAGAGGCAGACATCAAGTGTCTCGTGAACA
AGGAGAACGTCAGGTACGCTTCGAGCGAACAGGGGTATCTCTCGAGTCTG
TTGGGAAGTGGACCGGACAAGTGCCCCTGGATGATCGGTGAGAGCTTCTT
GACGGGCGGTGTACAGATCAAGCTGCTTCTTGTTACGTCGGAACATACGA
GGAAGGCATTCTCTGGGTCCAGCCAGCTGAACGAAGCGGGGTACAATAAA
TTGTCCCGGGCTAACGCTCAGCTAGAAAATCTGCTGAAAGATGGGGGGGG
GGTGTACAACATATCGAGCCTTCTGGAGTCGACAAGCATCAGTGAAGACA
TCGTGGTGATGTCGGCAGACCCGGGACAGGCTAAGGTGATCAACGTCTCT
TCGGCTTCGGCCGGAATTTGGGCGAAGAAGGATCCGGACATTATTCTCAA
AAGTTCGACGTGTGTGTTCGGGGACGACTATCGTCGTGATACTCTTGCAT
CACGTTCAGACAACTATGAGACTTTTAGGCGGAAAAATCAGCCATACGGA
GTGGCAATCGATCTTCTGCGGCACGAGAAGAAGCGGACTTCTTGTCTCAC
GACGTTCATACAGTACTGCAAGAGTTGGTGCGCAAACGGGCCGGCGTTAT
TCCAAGAGAAGTTACAGAAAGGAAGGAAATTCATGCGTTTTGATCGTTTC
AGAGCTACCCAGAAGACGCTTGCTAAGATAGCGGACAGGTAC
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