mRNA_P-littoralis_Contig156.140.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig156.140.1 vs. uniprot
Match: D8LP58_ECTSI (Helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP58_ECTSI) HSP 1 Score: 370 bits (949), Expect = 1.050e-117 Identity = 219/460 (47.61%), Postives = 298/460 (64.78%), Query Frame = 1
Query: 13 KKAGVPRALQRLKEDLLKSSDTKKVRFGTVGDRGGRVRVQRKLYDPSAKRN-----------MNPGRSTIEQRRSAAVRNLRGHAEYEQRRQQCEVAKFMKSVADPVKNKKGKFSKTKGLLVAHGMGSGKTVTSLWVAKQYLADGRVNFVNIVAPNVAVPEFRDSFEKAGATPNQAGRIRVLTHDEFADNKRLCNFGNSLAIIDEAHLFTEGR*RALVRYDVPYLMLLSGTPAPNTPDDVVPLINLLCRNKADEMTQKVWNNKSTTTQRKIAFMKNKVSVFNIGAKFN*LGNIGGDRVRPERELPGFLVKNVRVKLSEDQKKRYLALDRKRQPESPEEREKYPFFIRERKIVYSGVAG-KG-ATPKISRVASDIAKEMKKSNAGASER----RLLHGRLLVYVENHETRGALIKEIKRVVGTEEMKKRSIEEYSGRTSGATRARIKKSFNEGKTDVLSLA 1341
KK + R + RL+EDL+ S K+V G V R GR R +R YDPSA++ +NP RST++ R A G + ++R QC V +FMK VADP KNK+ +++ TKGLL+AHGMGSGKT+TSLWVAK+Y+A RV FVNI+APNVAV EF DSFE+AG TP AG+IRVLTHDEFA NK+ F SL I+DEAH+FT + AL + DV YLMLLSGTPAPN P ++VPLINLL R K D T++ W+ +TT+ K F+++KVS++NIG K+N L G + + PG+ V VKLS Q Y+ L++ + ESP +REK+PF+ RERKIV + KG TPK+++VASD+ +++KKS++ + RL GRLL+Y + +T L EI+R+ + + I Y+G TS R RIK++FN G+ D+L ++
Sbjct: 48 KKKKIARQMLRLQEDLVSSQ--KRVGVGGVVGRSGRPRAKRVRYDPSAEKKRVRPSKPAPKMLNPTRSTVDDRVDTARTRALGRKQETEKRNQCNVIEFMKRVADPTKNKEKQYANTKGLLIAHGMGSGKTLTSLWVAKEYIAKNRVKFVNILAPNVAVGEFIDSFERAGITPQIAGKIRVLTHDEFALNKKAREFSKSLVIVDEAHMFTGIKYDALAKADVSYLMLLSGTPAPNAPSEIVPLINLLYRKKKDNWTKQKWDKSTTTSSEKKKFLRDKVSMYNIGPKYNYLRKRGTE-FHSANKFPGYKVSMRNVKLSPSQNAAYVKLNKTVKKESPGQREKHPFYARERKIVNTHPKRQKGRVTPKVAKVASDVVRDIKKSHSRKQSKHDPDRLSRGRLLLYAYHKDTIADLEGEIRRLCDEKNIVSPQISTYNGDTSAGERMRIKQAFNNGEMDLLIIS 504
BLAST of mRNA_P-littoralis_Contig156.140.1 vs. uniprot
Match: Q8QNN8_ESV1K (EsV-1-23 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNN8_ESV1K) HSP 1 Score: 365 bits (936), Expect = 1.000e-115 Identity = 218/457 (47.70%), Postives = 293/457 (64.11%), Query Frame = 1
Query: 31 RALQRLKEDLLKSSDTKKVRFGTVGDRGGRVRVQRKLYDPSAKRN-----------MNPGRSTIEQRRSAAVRNLRGHAEYEQRRQQCEVAKFMKSVADPVKNKKGKFSKTKGLLVAHGMGSGKTVTSLWVAKQYLADGRVNFVNIVAPNVAVPEFRDSFEKAGATPNQAGRIRVLTHDEFADNKRLCNFGNSLAIIDEAHLFTEGR*RALVRYDVPYLMLLSGTPAPNTPDDVVPLINLLCRNKADEMTQKVWNNKSTTTQRKIAFMKNKVSVFNIGAKFN*LGNIGGDRVRPERELPGFLVKNVRVKLSEDQKKRYLALDRKRQPESPEEREKYPFFIRERKIVYSGV----AGKG-ATPKISRVASDIAKEMKKSNAGASER----RLLHGRLLVYVENHETRGALIKEIKRVVGTEEMKKRSIEEYSGRTSGATRARIKKSFNEGKTDVLSLA 1341
RAL RL+EDL+ S K+V G + R GR R +R YDPS + +NP RST++ R A +G + Q++ QC V +FMK VADP +NK+ K++ TKGLL+AHGMGSGKT+TSLWVAK+Y+A RV FVNI+APNVAV EF DSFE+AG TP AG+IRVLTHDEFA NK+ F SL I+DEAH+FT + AL + DV YLMLLSGTPAPN P ++VPLINLL R + D T++ W+ +TT K F+++KVS++NIG K+N L G + PG+ V VKLS Q Y+ L++ + ESP EREK+PF+ RER IV + G+G TPKI++VASD+A+++KKS+ + RL GRLL+Y + +T L EI+R+ + + I Y+G TS R RIK++FN G+ D+L ++
Sbjct: 54 RALLRLQEDLVPSK--KRVDVGGMVGRSGRPRAKRVRYDPSTAKKRVSPSKSAPEILNPTRSTVDARVDTARTRAQGRNQETQKKNQCNVIEFMKRVADPTRNKEEKYANTKGLLIAHGMGSGKTLTSLWVAKEYIAKNRVKFVNILAPNVAVGEFIDSFERAGITPQTAGKIRVLTHDEFALNKKAREFSKSLVIVDEAHMFTGMKYDALAKADVSYLMLLSGTPAPNAPSEIVPLINLLHRKREDHWTRQKWDKSTTTPSEKKKFLRDKVSMYNIGPKYNYLRQRGTE-FPSANNFPGYKVSTRNVKLSPSQNAAYMKLNKTVKKESPGEREKHPFYARERVIVNTHPKRRHVGRGNVTPKIAKVASDVARDIKKSHGRNQSKQDPNRLGRGRLLLYAYHRDTITDLEGEIRRLCADKNIVSPQISTYNGDTSARERMRIKEAFNNGEMDLLIIS 507
BLAST of mRNA_P-littoralis_Contig156.140.1 vs. uniprot
Match: A0A6H5JDR8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR8_9PHAE) HSP 1 Score: 152 bits (384), Expect = 6.490e-36 Identity = 96/224 (42.86%), Postives = 127/224 (56.70%), Query Frame = 1
Query: 79 KKVRFGTVGDRGGRVRVQRKLYDP-SAKRN-----------MNPGRSTIEQRRSAAVRNLRGHAEYEQRRQQCEVAKFMKSVADPVKNKKGKFSKTKGLLVAHGMGSGKTVTSLWVAKQYLADGRVNFVNIVAPNVAVPEFRDSFEKAGATPNQAGRIRVLTHDEFADNKRLCNFGNSLAIIDEAHLFTEGR*RALVRYDVPYLMLLSGTPAPNTPDDVVPLIN 714
K+VR G V R GR + +R YDP +AK+ ++P RST + R +A RG + ++++C V FMK VAD KN++ ++ TK +V FVNI+A NVAV E +SFE+AG TP AG+IRVLTHD FA N++ F SL I+DEAH+FT + AL + DV YLMLLSGTPAPN P ++VPLIN
Sbjct: 434 KRVRVGGVVGRSGRPQAKRVQYDPGTAKKRVSSSKSAPTVGLDPTRSTFDDRVESANTRARGRKQETDKKKKCNVIDFMKRVADLTKNEEKIYANTK---------------------------KVKFVNILASNVAVGELINSFERAGITPQIAGKIRVLTHDGFALNRKARKFSRSLVIVDEAHMFTAIKYDALAKADVSYLMLLSGTPAPNVPSEIVPLIN 630
BLAST of mRNA_P-littoralis_Contig156.140.1 vs. uniprot
Match: A0A5J6VJP7_9VIRU (SNF2 family N-terminal domain protein n=1 Tax=Megaviridae environmental sample TaxID=1737588 RepID=A0A5J6VJP7_9VIRU) HSP 1 Score: 73.2 bits (178), Expect = 4.720e-10 Identity = 54/178 (30.34%), Postives = 88/178 (49.44%), Query Frame = 1
Query: 319 FSKTKGLLVAHGMGSGKTVTSLWVAKQYLADGRVNFVNIVAPNVAVPEFRDSFEKAGATPNQAGRIRVLTHDEFADNKRLCNFGNSLAIIDEAHLFTEGR*RA------LVRYDVPYLMLLSGTPAPNTPDDVVPLINLLCRNKADEMTQKVWNNK--STTTQRKIAFMKNKVSVFNI 828
F KT+GL++ HGMGSGKT+TS+ A+ + + +++ P V + KA A + + +++HD++ + + N L I+DEAH+ + RY L LL+GTP N P D L+N++ NK QK++N K T+T+ K++ NI
Sbjct: 15 FRKTRGLILNHGMGSGKTLTSIACAEDAMKNKPNLQIHVAVPAKLVSNYEKELAKANANTS---KYIIMSHDKYIKWIQP-PYSNILLIVDEAHILRNATTEKSKVFFKVARYCYKVL-LLTGTPLVNYPSDASHLLNMIKGNKFLPTDQKIFNTKFIKTSTETNFFPFTKKITKINI 187
BLAST of mRNA_P-littoralis_Contig156.140.1 vs. uniprot
Match: A0A6C0F7I3_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0F7I3_9ZZZZ) HSP 1 Score: 57.4 bits (137), Expect = 4.730e-5 Identity = 34/104 (32.69%), Postives = 59/104 (56.73%), Query Frame = 3
Query: 1320 NRRAF----ISSAGVVGLDLQCTSKVFVLDMSWNISQMNQTIGRAIRFNSHSKKKTGCQHRHVDVYVYTSVLPKPRNGVKVF-DQIVLEKSLNKWKLVADMVES 1616
N R F +S +G GLDL+ T +V +++ WN SQ++Q IGRA+R+ SH ++VD+Y + SV K + + D+ ++ S +K +L+ +E+
Sbjct: 367 NNRKFDVLCLSRSGSEGLDLKRTREVHIMEPFWNNSQLDQVIGRAVRYKSHENMPNN--EKNVDIYHWYSVYSKRSSSKDISADKFLINMSKSKQELINKFIEA 468
BLAST of mRNA_P-littoralis_Contig156.140.1 vs. uniprot
Match: A0A6C0M0Y9_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0M0Y9_9ZZZZ) HSP 1 Score: 57.4 bits (137), Expect = 5.320e-5 Identity = 42/132 (31.82%), Postives = 66/132 (50.00%), Query Frame = 3
Query: 1233 DEKEEHRGVFRSY--FRGDACSYQEELQ*RQNRRAFISSAGV-VGLDLQCTSKVFVLDMSWNISQMNQTIGRAIRFNSHSKKKTGCQHRHVDVYVYTSVLPKPRNGVKVFDQIVLEKSLNKWKLVADMVESI 1619
++KE R VF SY GD C + + + + G+ L +V +L+ WNIS+M Q IGRA+RF SH K R V VY+Y S P+ N K+ D+ + + ++ K L+ + E++
Sbjct: 431 EQKETIRSVFNSYDNVNGDMC------------KVILGTPAIREGVSLLRVRQVHILEPYWNISRMEQVIGRAVRFCSH--KDLPKDDRVVKVYLYVSCPPEG-NRSKIVDEYIYDMAIKKEHLIQEFYETM 547
BLAST of mRNA_P-littoralis_Contig156.140.1 vs. uniprot
Match: A0A0F9UZT8_9ZZZZ (Uncharacterized protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9UZT8_9ZZZZ) HSP 1 Score: 57.0 bits (136), Expect = 6.380e-5 Identity = 44/147 (29.93%), Postives = 69/147 (46.94%), Query Frame = 1
Query: 334 GLLVAHGMGSGKTVTSLWVAKQYLADGRVNFVNIVAPNVAVPEFRDSFEKAGATPNQAGRIRVLTHDEFADNKRLCNFGNSLAIIDEAHLFTE---GR*RALVRYDVPYLMLLSGTPAPNTPDDVVPLINLLCRNKADEMTQKVWNN 765
GL+VAHG+GSGKT+TSL V D ++V P +D++ K ++ + + A +R+ + + IIDEAH + R L MLL+ +P N P D+ PL+N+ NK + +K + N
Sbjct: 41 GLVVAHGLGSGKTLTSLAVI-----DALKQPTDVVVP----ASLQDNYAKEQRKHTSGIKLEIQSLQNIARKRRVPS--KPVLIIDEAHRARNPDTAQYRTLAASPAKKRMLLTASPIYNHPSDLAPLVNIAAGNKVLPLNKKDFEN 176
BLAST of mRNA_P-littoralis_Contig156.140.1 vs. uniprot
Match: G0T581_IRV9 (Helicase ATP-binding domain-containing protein n=2 Tax=Chloriridovirus TaxID=10491 RepID=G0T581_IRV9) HSP 1 Score: 57.4 bits (137), Expect = 6.790e-5 Identity = 65/264 (24.62%), Postives = 114/264 (43.18%), Query Frame = 1
Query: 334 GLLVAHGMGSGKTVTSLWVAKQYLADG------------------------RVNFVNIVAPNVAVPEFRDSFEKAGATPNQAGRIRV---LTHDEF----------ADNKRLCNFGNSLAIIDEAH------------LFTEGR*RALVRYDVPYLMLLSGTPAPNTPDDVVPLINLLCRNKADEMTQKVWNNKSTTTQR---KIAFMKNKVSVFNIGAKFN*LGNIGGDRVRPERELPGFLVKNVRVKLSEDQKKRYLALDRK 969
GLL+ H MG+GKT T++ VA++++A + NF+N +A ++ + +K ++ R V T D F +D +++ F N+L I+DEAH ++TE R ++LL+GTP + P++VV L+NL+ RN E+T + +N Q+ +++++ +S N + +G + +V P VK+ E Q K YL +K
Sbjct: 67 GLLLVHEMGTGKTCTAVGVAEKFIASRNSESNTFPSTTLKNIVVLTKGKGLQSNFINEIANVCTSGQYLEGLDKYIRNRDKKIRKNVKVNYTFDTFEIFAKNLRKISDREKILRFENTLFIVDEAHNLRMSSDPEERNIYTEIR-NLFTLLQTRKILLLTGTPMKDQPEEVVNLLNLILRN---ELTMEDLDNPLVFKQKINGYVSYLRAMMSDVNRKEEGRLIGALKHFKVYP-------------VKMEEYQSKIYLEAKKK 313 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig156.140.1 >prot_P-littoralis_Contig156.140.1 ID=prot_P-littoralis_Contig156.140.1|Name=mRNA_P-littoralis_Contig156.140.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=152bp MNPGRSTIEQRRSAAVRNLRGHAEYEQRRQQCEVAKFMKSVADPVKNKKGback to top mRNA from alignment at P-littoralis_Contig156:400819..402479- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig156.140.1 ID=mRNA_P-littoralis_Contig156.140.1|Name=mRNA_P-littoralis_Contig156.140.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1661bp|location=Sequence derived from alignment at P-littoralis_Contig156:400819..402479- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig156:400819..402479- >mRNA_P-littoralis_Contig156.140.1 ID=mRNA_P-littoralis_Contig156.140.1|Name=mRNA_P-littoralis_Contig156.140.1|organism=Pylaiella littoralis U1_48|type=CDS|length=456bp|location=Sequence derived from alignment at P-littoralis_Contig156:400819..402479- (Pylaiella littoralis U1_48)back to top |