mRNA_P-littoralis_Contig156.130.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.130.1
Unique NamemRNA_P-littoralis_Contig156.130.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig156.130.1 vs. uniprot
Match: D8LPI7_ECTSI (Putative thaumatin, pathogenesis-related protein (PR-5) (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPI7_ECTSI)

HSP 1 Score: 329 bits (844), Expect = 6.060e-108
Identity = 158/257 (61.48%), Postives = 194/257 (75.49%), Query Frame = 1 
Query:  106 AETRTIFVKNACSFDLDLGFTGGFAGSAPCSLNQMEDGTSGRCFWDLDIPTYSTAGEESVLTIHQSTDQENEVVVSGQIYALRSPYMNDVCPDGCNASQGPSGTVTLFEFTVLLS-NLSYYDISNVHGANLPATFGPPDSETVP-EDPYRNGVAGKHDSSWHFEPPEQYKKYLIEVINAHGSCSIDTDCD--QHETCGASFSQEEPLHGTCGDLTGYLNAHTNGIAGSTGYPFYCDTYHDLYACAEKYQESGYSNSV 864
            AETRTI +KN CSFDLD+GFTGG+AG APC+ NQ ED   GRCFW L++  +  AG+E  + I ++ D EN VV SG +YA++SP+ ++ CPDGC+AS G +GTVTL EFT+L S  L++YDIS+VHGAN+P  FGP  S+     DPYRNGVAG  D SW FEPPE+Y+KYLIEV NAHG+C  D +CD  Q E CGAS   + P++GTCG+L GYLNAHTN IAGS GYPFYC+ YHDLY C+ +Y ESGYS SV
Sbjct:   45 AETRTIVIKNVCSFDLDMGFTGGYAGPAPCAGNQEEDVDGGRCFWTLELSDFLKAGKEMSVVIEKNNDTENNVVWSGAMYAIQSPHADEACPDGCSASVGAAGTVTLSEFTMLASPTLTFYDISHVHGANIPTVFGPHSSKGKDAHDPYRNGVAGG-DCSWAFEPPEEYRKYLIEVKNAHGTCLQDDECDVAQREVCGASLKGDTPVYGTCGELFGYLNAHTNCIAGSLGYPFYCEVYHDLYGCSGQYCESGYSESV 300
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BLAST of mRNA_P-littoralis_Contig156.130.1 vs. uniprot
Match: Q8QKV0_ESV1K (EsV-1-169 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QKV0_ESV1K)

HSP 1 Score: 323 bits (829), Expect = 1.700e-105
Identity = 155/257 (60.31%), Postives = 192/257 (74.71%), Query Frame = 1 
Query:  109 ETRTIFVKNACSFDLDLGFTGGFAGSAPCSLNQMEDGTSGRCFWDLDIPTYSTAGEESVLTIHQSTDQENEVVVSGQIYALRSPYMNDVCPDGCNASQGPSGTVTLFEFTVLLS-NLSYYDISNVHGANLPATFGPPDS-ETVPEDPYRNGVAGKHDSSWHFEPPEQYKKYLIEVINAHGSCSIDTDCD--QHETCGASFSQEEPLHGTCGDLTGYLNAHTNGIAGSTGYPFYCDTYHDLYACAEKYQESGYSNSVT 867
            ETRTI +KN CSFDLD+GFTGG+AGSAPC+ NQ ED   GRCFW L +  +  AG+E  + I ++ D EN+VV SG +YA++SP++ + CPD C+AS G +GTVTL EFT+L +  L++YDIS+VHGAN+P  FGP  S E    DPYRNGVAG  D SW FEPPE+Y+KYLIEV NAHG+C  D +CD  + E CG S   + P++GTCG+L GY+NAHTN IAGS GYPFYC+ YHDLY C+  Y ESGYS SVT
Sbjct:   56 ETRTIVIKNVCSFDLDMGFTGGYAGSAPCAGNQEEDVDGGRCFWTLGLADFLEAGQEMSVVIAKNNDTENDVVWSGAMYAIQSPHVEEACPDECSASVGAAGTVTLSEFTMLANPTLTFYDISHVHGANIPTAFGPHASTERDAGDPYRNGVAGG-DCSWEFEPPEEYRKYLIEVKNAHGTCLQDDECDVDEREVCGVSLKGDTPVYGTCGELFGYMNAHTNCIAGSLGYPFYCEVYHDLYGCSGPYCESGYSESVT 311
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BLAST of mRNA_P-littoralis_Contig156.130.1 vs. uniprot
Match: B5LW99_9PHYC (Putative thaumatin/PR5-like protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LW99_9PHYC)

HSP 1 Score: 171 bits (434), Expect = 1.200e-46
Identity = 102/265 (38.49%), Postives = 146/265 (55.09%), Query Frame = 1 
Query:   97 KLRAETRTIFVKNACSFDLDLGFTGGFAG----SAPCSLNQMEDGTSGRCFWDLD-IPTYSTAGEESVLTIHQSTDQENEVVVSGQIYALRSPYMNDVCPDG-CNASQGPSGTVTLFEFTVLLSNLSYYDISNVHGANLPATFGPPDSETVPEDPYRNGVAGKHDSSWHFEPPEQYKKYLIEVI-NAHGS-CSIDTDCDQH-ETCGASFSQEEPLHGTCGDLTGYLNAHTNGIAGSTGYPFYCDTYHDLYACAEKYQESGYSNSV 864
            K + ++R + + N+C+FDL LG TGG  G    SA C LNQM    +  CFW L+  P    +G      IH+  +     + SG ++ ++    +  C  G C   +GP G+VT  EFT + + + YYDIS + G NLP T  P   +   E+ Y  GVAG  D SW F+P    +KYL  V  N  GS C    DC +  + CG ++ +E   HG CG+L G+ +AH+N IAG+TGYPF+C+ Y D  +C+ +Y  SGY+  V
Sbjct:   28 KTKKDSRHLTILNSCTFDLALGVTGGNEGPAKESATCPLNQMFHEETDNCFWHLEGSPKVLLSGASWETDIHEVKNH----LFSGNVWGVKEDQFDSHCRGGECMPWRGPGGSVTKVEFTFIPNGIDYYDISVIEGVNLPVTMSPDSGDKDLENKYICGVAGG-DCSWDFKPDHDLEKYLTLVTANGDGSTCETTVDCPRAGDVCG-TYDKE---HGVCGELNGFSSAHSNCIAGATGYPFHCELYGDAISCSGRYHLSGYNAHV 283
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BLAST of mRNA_P-littoralis_Contig156.130.1 vs. uniprot
Match: A0A1X2GWJ6_9FUNG (Osmotin, thaumatin-like protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GWJ6_9FUNG)

HSP 1 Score: 54.3 bits (129), Expect = 6.680e-5
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 2 
Query:  884 EAYKWIEYIKQGCPNCYSFAYDDSTSTFTSDSQTFELVFCP 1006
            +A ++   +K  CP+ YSFAYDDSTSTFT  + T+ +VFCP
Sbjct:  184 KANQFATQMKSACPDAYSFAYDDSTSTFTCQADTYTVVFCP 224
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LPI7_ECTSI6.060e-10861.48Putative thaumatin, pathogenesis-related protein (... [more]
Q8QKV0_ESV1K1.700e-10560.31EsV-1-169 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
B5LW99_9PHYC1.200e-4638.49Putative thaumatin/PR5-like protein n=1 Tax=Feldma... [more]
A0A1X2GWJ6_9FUNG6.680e-553.66Osmotin, thaumatin-like protein n=1 Tax=Hesseltine... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:383601..384647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1047
Hectar predicted targeting categoryother localisation
Exons1
Cds size1047
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789746.7710822-CDS-P-littoralis_Contig156:383600..3846471680789746.7710822-CDS-P-littoralis_Contig156:383600..384647Pylaiella littoralis U1_48CDSP-littoralis_Contig156 383601..384647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.130.1prot_P-littoralis_Contig156.130.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 383601..384647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.130.1

>prot_P-littoralis_Contig156.130.1 ID=prot_P-littoralis_Contig156.130.1|Name=mRNA_P-littoralis_Contig156.130.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=349bp
GEVAGSGCDCSTPGPTAVTSQAPSPTQIGTTDKLRAETRTIFVKNACSFD
LDLGFTGGFAGSAPCSLNQMEDGTSGRCFWDLDIPTYSTAGEESVLTIHQ
STDQENEVVVSGQIYALRSPYMNDVCPDGCNASQGPSGTVTLFEFTVLLS
NLSYYDISNVHGANLPATFGPPDSETVPEDPYRNGVAGKHDSSWHFEPPE
QYKKYLIEVINAHGSCSIDTDCDQHETCGASFSQEEPLHGTCGDLTGYLN
AHTNGIAGSTGYPFYCDTYHDLYACAEKYQESGYSNSVTNNLARRGVQMD
RVHKTRVSELLQLCVRRQHVHIYLRFSNVRTCFLPTRQRARVVQPLSL*
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mRNA from alignment at P-littoralis_Contig156:383601..384647-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.130.1 ID=mRNA_P-littoralis_Contig156.130.1|Name=mRNA_P-littoralis_Contig156.130.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1047bp|location=Sequence derived from alignment at P-littoralis_Contig156:383601..384647- (Pylaiella littoralis U1_48)
GGGGAGGTGGCAGGAAGCGGGTGCGACTGCAGCACACCCGGGCCGACCGC
GGTCACGTCTCAGGCACCGTCGCCCACACAAATCGGTACAACCGATAAGC
TCAGAGCCGAGACGCGTACAATCTTCGTGAAAAATGCTTGTTCTTTCGAT
CTAGACTTGGGGTTCACAGGAGGCTTTGCGGGATCCGCTCCGTGTTCTCT
CAACCAGATGGAAGATGGCACGAGTGGCAGATGCTTTTGGGATTTAGACA
TTCCCACGTATTCTACAGCCGGTGAAGAGAGCGTCTTGACCATACATCAA
AGTACCGACCAAGAAAATGAAGTTGTCGTGAGCGGTCAAATTTATGCCCT
AAGGTCCCCCTACATGAACGACGTGTGTCCCGACGGGTGCAATGCGAGCC
AAGGCCCTTCTGGCACCGTGACTCTCTTCGAGTTTACCGTGCTCTTGTCC
AACCTCAGCTACTACGACATCTCTAACGTTCACGGGGCCAATCTTCCAGC
AACGTTCGGACCACCGGACTCGGAAACAGTACCCGAAGATCCGTATCGCA
ATGGTGTTGCCGGGAAACACGATTCCTCGTGGCACTTTGAGCCCCCCGAG
CAGTACAAAAAATATCTCATTGAAGTCATAAACGCACATGGAAGCTGCTC
GATAGACACCGATTGTGACCAACACGAGACTTGCGGTGCCTCGTTTTCCC
AAGAAGAGCCCCTGCATGGAACATGTGGTGATCTGACAGGATACTTGAAC
GCTCACACAAACGGCATCGCGGGTTCCACCGGCTACCCTTTCTACTGCGA
CACGTACCACGACCTCTACGCTTGTGCCGAAAAATACCAAGAGTCTGGCT
ACAGCAACAGCGTGACGAACAATCTGGCTCGACGAGGCGTACAAATGGAT
CGAGTACATAAAACAAGGGTGTCCGAACTGCTACAGCTTTGCGTACGACG
ACAGCACGTCCACATTTACCTCAGATTCTCAAACGTTCGAACTTGTTTTT
TGCCCACCAGACAGCGAGCAAGAGTTGTTCAACCTTTGAGCCTATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig156:383601..384647-

>mRNA_P-littoralis_Contig156.130.1 ID=mRNA_P-littoralis_Contig156.130.1|Name=mRNA_P-littoralis_Contig156.130.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1047bp|location=Sequence derived from alignment at P-littoralis_Contig156:383601..384647- (Pylaiella littoralis U1_48)
GGGGAGGTGGCAGGAAGCGGGTGCGACTGCAGCACACCCGGGCCGACCGC
GGTCACGTCTCAGGCACCGTCGCCCACACAAATCGGTACAACCGATAAGC
TCAGAGCCGAGACGCGTACAATCTTCGTGAAAAATGCTTGTTCTTTCGAT
CTAGACTTGGGGTTCACAGGAGGCTTTGCGGGATCCGCTCCGTGTTCTCT
CAACCAGATGGAAGATGGCACGAGTGGCAGATGCTTTTGGGATTTAGACA
TTCCCACGTATTCTACAGCCGGTGAAGAGAGCGTCTTGACCATACATCAA
AGTACCGACCAAGAAAATGAAGTTGTCGTGAGCGGTCAAATTTATGCCCT
AAGGTCCCCCTACATGAACGACGTGTGTCCCGACGGGTGCAATGCGAGCC
AAGGCCCTTCTGGCACCGTGACTCTCTTCGAGTTTACCGTGCTCTTGTCC
AACCTCAGCTACTACGACATCTCTAACGTTCACGGGGCCAATCTTCCAGC
AACGTTCGGACCACCGGACTCGGAAACAGTACCCGAAGATCCGTATCGCA
ATGGTGTTGCCGGGAAACACGATTCCTCGTGGCACTTTGAGCCCCCCGAG
CAGTACAAAAAATATCTCATTGAAGTCATAAACGCACATGGAAGCTGCTC
GATAGACACCGATTGTGACCAACACGAGACTTGCGGTGCCTCGTTTTCCC
AAGAAGAGCCCCTGCATGGAACATGTGGTGATCTGACAGGATACTTGAAC
GCTCACACAAACGGCATCGCGGGTTCCACCGGCTACCCTTTCTACTGCGA
CACGTACCACGACCTCTACGCTTGTGCCGAAAAATACCAAGAGTCTGGCT
ACAGCAACAGCGTGACGAACAATCTGGCTCGACGAGGCGTACAAATGGAT
CGAGTACATAAAACAAGGGTGTCCGAACTGCTACAGCTTTGCGTACGACG
ACAGCACGTCCACATTTACCTCAGATTCTCAAACGTTCGAACTTGTTTTT
TGCCCACCAGACAGCGAGCAAGAGTTGTTCAACCTTTGAGCCTATGA
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