mRNA_P-littoralis_Contig156.129.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.129.1
Unique NamemRNA_P-littoralis_Contig156.129.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig156.129.1 vs. uniprot
Match: D8LPJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPJ0_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 2.810e-91
Identity = 142/295 (48.14%), Postives = 197/295 (66.78%), Query Frame = 1 
Query:   10 NLLCFGPASLISEFDGGLNYMYLGVLSRECCAQWPLCTSTVMGIVITSTARLAEVPLGDFRTRCFIHGLVWAIDRKLWAQVSWIVDHLPDTHRLYSDNLIARILETGGVAAISYAIPVTEPKT--ARPMFRDAAVEAANKGQTKVAQYLCTRFTNIKICGAVVLAASARGNLEMVKWCANKM-HDFPTDAIKALLINGNVDALEWLKNLGKNPLD-SDRLVIYAALGGHLSALDWVLDNTMA-KYDEREVCLMVGVKGLLHVLKHLIVCRGFAFNRTKCIRFAKKNSGVGAWLIT 879
            +++  GP SLIS++DGG N+ Y+G L+++   +WPL T+T +  +I+ST RLAE+P+G FRT+C I GLV A+D +    ++WIV  LP  + L++D L   ++ETG V+AISYAIP+T  K   A P FR +   A  KG    A++L TRF + ++   VV+ A   G+  +V WCA  M   FP +A +AL+  GN+DAL WLK  GK      ++ V+YAALGGH+ A+DWVLDN    +YD  EVCLMV  KGLL +LKHL+V RGF F+ T CIRFAKK SG+ +WL++
Sbjct:    4 DIISLGPTSLISQYDGGGNFFYMGCLTKDVRGRWPLATTTALNCIISSTTRLAELPIGPFRTKCLIQGLVRAVDTQQCDTLAWIVPRLPIEYALFTDKLSCAVIETGVVSAISYAIPLTRTKKNEAPPAFRVSVENAVRKGHVDAAKFLFTRFADKELRSTVVMTACLEGDDSLVHWCAGAMMSQFPPEATRALVYRGNIDALAWLKTNGKYSYTLMNQTVLYAALGGHVEAVDWVLDNNPGIRYDAGEVCLMVCRKGLLDILKHLVVRRGFWFHATDCIRFAKKGSGIASWLMS 298
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPJ0_ECTSI2.810e-9148.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:380250..381137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000014483
Model size888
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000302
EggNOG OGs2AMK4@1|root,2RZCC@2759|Eukaryota,1MIT8@121069|Pythiales
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-06_005210.1
DescriptionAnkyrin repeats (many copies)
Cds size888
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789746.7344701-CDS-P-littoralis_Contig156:380249..3811371680789746.7344701-CDS-P-littoralis_Contig156:380249..381137Pylaiella littoralis U1_48CDSP-littoralis_Contig156 380250..381137 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.129.1prot_P-littoralis_Contig156.129.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 380250..381137 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.129.1

>prot_P-littoralis_Contig156.129.1 ID=prot_P-littoralis_Contig156.129.1|Name=mRNA_P-littoralis_Contig156.129.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=296bp
MPFNLLCFGPASLISEFDGGLNYMYLGVLSRECCAQWPLCTSTVMGIVIT
STARLAEVPLGDFRTRCFIHGLVWAIDRKLWAQVSWIVDHLPDTHRLYSD
NLIARILETGGVAAISYAIPVTEPKTARPMFRDAAVEAANKGQTKVAQYL
CTRFTNIKICGAVVLAASARGNLEMVKWCANKMHDFPTDAIKALLINGNV
DALEWLKNLGKNPLDSDRLVIYAALGGHLSALDWVLDNTMAKYDEREVCL
MVGVKGLLHVLKHLIVCRGFAFNRTKCIRFAKKNSGVGAWLITTT*
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mRNA from alignment at P-littoralis_Contig156:380250..381137-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.129.1 ID=mRNA_P-littoralis_Contig156.129.1|Name=mRNA_P-littoralis_Contig156.129.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=888bp|location=Sequence derived from alignment at P-littoralis_Contig156:380250..381137- (Pylaiella littoralis U1_48)
ATGCCCTTCAACCTCCTGTGCTTCGGCCCAGCGTCGCTCATTTCCGAGTT
CGACGGTGGGTTGAACTACATGTACCTGGGTGTTCTTTCCCGTGAATGTT
GCGCGCAATGGCCGCTCTGTACTTCAACCGTAATGGGGATTGTCATCACG
TCCACCGCGAGATTGGCGGAGGTGCCGCTGGGTGATTTTCGAACCCGATG
CTTTATACATGGGCTGGTGTGGGCTATTGACCGAAAGCTGTGGGCGCAAG
TGTCGTGGATTGTGGATCACCTGCCCGACACGCACCGGCTCTATAGTGAC
AACCTGATCGCTCGAATTTTGGAGACGGGCGGCGTTGCGGCGATCAGCTA
TGCCATTCCGGTGACAGAGCCCAAGACGGCTAGACCAATGTTCAGAGATG
CCGCCGTCGAAGCAGCCAACAAGGGGCAAACCAAAGTCGCCCAGTACTTG
TGTACGCGATTTACAAACATCAAGATATGCGGCGCCGTGGTGTTGGCCGC
CTCGGCGAGAGGGAATCTAGAGATGGTAAAGTGGTGTGCGAACAAAATGC
ACGATTTTCCGACGGACGCCATCAAGGCTTTGCTGATCAACGGGAACGTT
GATGCCCTAGAATGGTTGAAGAACTTGGGAAAGAACCCGCTTGACTCGGA
CCGGCTAGTTATATATGCAGCTTTGGGAGGACACTTGTCGGCGTTGGACT
GGGTCTTGGATAACACCATGGCGAAGTACGACGAGAGGGAGGTTTGTCTG
ATGGTGGGTGTCAAAGGACTTCTCCACGTTCTAAAACACCTGATAGTGTG
TAGGGGATTTGCGTTCAACAGGACAAAGTGTATCAGGTTTGCTAAAAAAA
ACTCTGGGGTAGGGGCCTGGCTGATAACCACTACTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig156:380250..381137-

>mRNA_P-littoralis_Contig156.129.1 ID=mRNA_P-littoralis_Contig156.129.1|Name=mRNA_P-littoralis_Contig156.129.1|organism=Pylaiella littoralis U1_48|type=CDS|length=888bp|location=Sequence derived from alignment at P-littoralis_Contig156:380250..381137- (Pylaiella littoralis U1_48)
ATGCCCTTCAACCTCCTGTGCTTCGGCCCAGCGTCGCTCATTTCCGAGTT
CGACGGTGGGTTGAACTACATGTACCTGGGTGTTCTTTCCCGTGAATGTT
GCGCGCAATGGCCGCTCTGTACTTCAACCGTAATGGGGATTGTCATCACG
TCCACCGCGAGATTGGCGGAGGTGCCGCTGGGTGATTTTCGAACCCGATG
CTTTATACATGGGCTGGTGTGGGCTATTGACCGAAAGCTGTGGGCGCAAG
TGTCGTGGATTGTGGATCACCTGCCCGACACGCACCGGCTCTATAGTGAC
AACCTGATCGCTCGAATTTTGGAGACGGGCGGCGTTGCGGCGATCAGCTA
TGCCATTCCGGTGACAGAGCCCAAGACGGCTAGACCAATGTTCAGAGATG
CCGCCGTCGAAGCAGCCAACAAGGGGCAAACCAAAGTCGCCCAGTACTTG
TGTACGCGATTTACAAACATCAAGATATGCGGCGCCGTGGTGTTGGCCGC
CTCGGCGAGAGGGAATCTAGAGATGGTAAAGTGGTGTGCGAACAAAATGC
ACGATTTTCCGACGGACGCCATCAAGGCTTTGCTGATCAACGGGAACGTT
GATGCCCTAGAATGGTTGAAGAACTTGGGAAAGAACCCGCTTGACTCGGA
CCGGCTAGTTATATATGCAGCTTTGGGAGGACACTTGTCGGCGTTGGACT
GGGTCTTGGATAACACCATGGCGAAGTACGACGAGAGGGAGGTTTGTCTG
ATGGTGGGTGTCAAAGGACTTCTCCACGTTCTAAAACACCTGATAGTGTG
TAGGGGATTTGCGTTCAACAGGACAAAGTGTATCAGGTTTGCTAAAAAAA
ACTCTGGGGTAGGGGCCTGGCTGATAACCACTACTTGA
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