mRNA_P-littoralis_Contig156.109.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig156.109.1
Unique Name	mRNA_P-littoralis_Contig156.109.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig156.109.1 vs. uniprot
Match: A0A6H5K4K7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4K7_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 1.080e-28
Identity = 50/74 (67.57%), Postives = 55/74 (74.32%), Query Frame = 1

Query:    1 LTMGFTNKLRMRKHWSASPLHNCPPLRECMQRDFFELLYCRFLHCSDGNAPPRWEDEGENIPNPNFDSKWHIRW 222
            +TMG T K RM KHWS S   + P +RECM RD FELL CRF+HCSDGNAPPRW  E +  PNP FDSKWHIRW
Sbjct:  194 ITMGLTKKTRMTKHWSRSLHGDYPLVRECMSRDLFELLCCRFIHCSDGNAPPRWTGE-DKTPNPEFDSKWHIRW 266

[Close]

BLAST of mRNA_P-littoralis_Contig156.109.1 vs. uniprot
Match: A0A6H5KIE0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE0_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.910e-28
Identity = 51/75 (68.00%), Postives = 56/75 (74.67%), Query Frame = 1

Query:    1 LTMGFTNKLRMRKHWSASPLHNCPPLRECMQRDFFELLYCRFLHCSDGNAPPRWEDEGENIPNPNFDSKWHIRWL 225
            +TMG T K  MRKHWS S   + P +RECM RD FELLYCRF+HCSDGNAPPRW  E +  PNP FDSKWHIR L
Sbjct:  202 ITMGLTKKTHMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGE-DKTPNPEFDSKWHIREL 275

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BLAST of mRNA_P-littoralis_Contig156.109.1 vs. uniprot
Match: A0A6H5KNV0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV0_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 6.830e-28
Identity = 52/75 (69.33%), Postives = 57/75 (76.00%), Query Frame = 1

Query:    1 LTMGFTNKLRMRKHWSASPLHNCPPLRECMQRDFFELLYCRFLHCSDGNAPPRWEDEGENIPNPNFDSKWHIRWL 225
            +TMG T K RMRKHWS S   + P +RECM RD FELLYCRF+HCSDGNAPPRW  E +  PNP FDSKWHIR L
Sbjct:  493 ITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGE-DKTPNPEFDSKWHIREL 566

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BLAST of mRNA_P-littoralis_Contig156.109.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 7.250e-28
Identity = 52/75 (69.33%), Postives = 57/75 (76.00%), Query Frame = 1

Query:    1 LTMGFTNKLRMRKHWSASPLHNCPPLRECMQRDFFELLYCRFLHCSDGNAPPRWEDEGENIPNPNFDSKWHIRWL 225
            +TMG T K RMRKHWS S   + P +RECM RD FELLYCRF+HCSDGNAPPRW  E +  PNP FDSKWHIR L
Sbjct:  709 ITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGE-DKTPNPEFDSKWHIREL 782

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BLAST of mRNA_P-littoralis_Contig156.109.1 vs. uniprot
Match: A0A6H5K2B4_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B4_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.640e-27
Identity = 51/75 (68.00%), Postives = 57/75 (76.00%), Query Frame = 1

Query:    1 LTMGFTNKLRMRKHWSASPLHNCPPLRECMQRDFFELLYCRFLHCSDGNAPPRWEDEGENIPNPNFDSKWHIRWL 225
            +TMGFT K R+RKHWS S   + P +RECM RD FELLYCRF+HCSDGNAPP W  E +  PNP FDSKWHIR L
Sbjct:  554 ITMGFTKKTRIRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPHWTGE-DKTPNPEFDSKWHIREL 627

[Close]

BLAST of mRNA_P-littoralis_Contig156.109.1 vs. uniprot
Match: A0A6H5KAD5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAD5_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.620e-25
Identity = 54/100 (54.00%), Postives = 63/100 (63.00%), Query Frame = 1

Query:    1 LTMGFTNKLRMRKHWSASPLHNCPPLRECMQRDFFELLYCRFLHCSDGNAPPRWEDEGENIPNPNFDSKWHIRWLNTCHFVSLPLFPSWVPGV*C--WLE 294
            +TMG T K+RMRKHWS S   N P +++CM RD FELLYCRFLHCSD NAP R   +GE   NP++DSKWHIR L         L  +W   V C  WL 
Sbjct:  138 ITMGLTKKVRMRKHWSRSAHDNYPLVQKCMSRDVFELLYCRFLHCSDPNAPERLLPDGEE--NPDYDSKWHIRELEEI------LNTAWAANVECDNWLS 229

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BLAST of mRNA_P-littoralis_Contig156.109.1 vs. uniprot
Match: A0A6H5KMJ3_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMJ3_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 2.610e-25
Identity = 54/100 (54.00%), Postives = 63/100 (63.00%), Query Frame = 1

Query:    1 LTMGFTNKLRMRKHWSASPLHNCPPLRECMQRDFFELLYCRFLHCSDGNAPPRWEDEGENIPNPNFDSKWHIRWLNTCHFVSLPLFPSWVPGV*C--WLE 294
            +TMG T K+RMRKHWS S   N P +++CM RD FELLYCRFLHCSD NAP R   +GE   NP++DSKWHIR L         L  +W   V C  WL 
Sbjct:   38 ITMGLTKKVRMRKHWSRSAHDNYPLVQKCMPRDVFELLYCRFLHCSDPNAPERLLPDGEE--NPDYDSKWHIRELEEI------LNTAWAANVECDNWLS 129

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BLAST of mRNA_P-littoralis_Contig156.109.1 vs. uniprot
Match: A0A6H5JER6_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JER6_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.200e-24
Identity = 54/100 (54.00%), Postives = 63/100 (63.00%), Query Frame = 1

Query:    1 LTMGFTNKLRMRKHWSASPLHNCPPLRECMQRDFFELLYCRFLHCSDGNAPPRWEDEGENIPNPNFDSKWHIRWLNTCHFVSLPLFPSWVPGV*C--WLE 294
            +TMG T K+RMRKHWS S   N P +++CM RD FELLYCRFLHCSD NAP R   +GE   NP++DSKWHIR L         L  +W   V C  WL 
Sbjct:  138 ITMGLTKKVRMRKHWSRSAHDNYPLVQKCMSRDVFELLYCRFLHCSDPNAPERLLPDGEE--NPDYDSKWHIRELEEI------LNTAWAANVECDNWLS 229

[Close]

BLAST of mRNA_P-littoralis_Contig156.109.1 vs. uniprot
Match: A0A6H5JJP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJP9_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 9.410e-23
Identity = 46/68 (67.65%), Postives = 51/68 (75.00%), Query Frame = 1

Query:   22 KLRMRKHWSASPLHNCPPLRECMQRDFFELLYCRFLHCSDGNAPPRWEDEGENIPNPNFDSKWHIRWL 225
            K RMRKHWS S   + P +R+CM RD FELLY RF+HCSDGNAPPRW  E +  PNP FDSKWHIR L
Sbjct:  662 KTRMRKHWSRSLHDDYPLVRKCMSRDLFELLYSRFIHCSDGNAPPRWTGE-DKTPNPEFDSKWHIREL 728

[Close]

BLAST of mRNA_P-littoralis_Contig156.109.1 vs. uniprot
Match: A0A6H5KCC7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCC7_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.830e-22
Identity = 53/100 (53.00%), Postives = 62/100 (62.00%), Query Frame = 1

Query:    1 LTMGFTNKLRMRKHWSASPLHNCPPLRECMQRDFFELLYCRFLHCSDGNAPPRWEDEGENIPNPNFDSKWHIRWLNTCHFVSLPLFPSWVPGV*C--WLE 294
            +TMG T K+RMRKHWS S   N P +++CM RD FELLYCRFLHCSD NAP R   +GE   NP++DSK HIR L         L  +W   V C  WL 
Sbjct:   38 ITMGLTKKVRMRKHWSRSAHDNYPLVQKCMSRDVFELLYCRFLHCSDPNAPERLLPDGEE--NPDYDSKRHIRELEEI------LNTAWATNVECGNWLS 129

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig156.109.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig156.109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16


Match Name	E-value	Identity	Description
A0A6H5K4K7_9PHAE	1.080e-28	67.57	DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto...	[more]
A0A6H5KIE0_9PHAE	1.910e-28	68.00	DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto...	[more]
A0A6H5KNV0_9PHAE	6.830e-28	69.33	DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto...	[more]
A0A6H5JW40_9PHAE	7.250e-28	69.33	HTH La-type RNA-binding domain-containing protein ...	[more]
A0A6H5K2B4_9PHAE	1.640e-27	68.00	DDE_Tnp_1_7 domain-containing protein (Fragment) n...	[more]
A0A6H5KAD5_9PHAE	1.620e-25	54.00	DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto...	[more]
A0A6H5KMJ3_9PHAE	2.610e-25	54.00	DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto...	[more]
A0A6H5JER6_9PHAE	2.200e-24	54.00	DDE_Tnp_1_7 domain-containing protein (Fragment) n...	[more]
A0A6H5JJP9_9PHAE	9.410e-23	67.65	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KCC7_9PHAE	1.830e-22	53.00	DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig156	contig	P-littoralis_Contig156:334165..334604 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	440
Hectar predicted targeting category	other localisation
Exons	1
Cds size	276

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789746.405535-UTR-P-littoralis_Contig156:334164..334322	1680789746.405535-UTR-P-littoralis_Contig156:334164..334322	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig156 334165..334322 -
1680789746.4299111-UTR-P-littoralis_Contig156:334598..334604	1680789746.4299111-UTR-P-littoralis_Contig156:334598..334604	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig156 334599..334604 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680789746.4154387-CDS-P-littoralis_Contig156:334322..334598	1680789746.4154387-CDS-P-littoralis_Contig156:334322..334598	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig156 334323..334598 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig156.109.1	prot_P-littoralis_Contig156.109.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig156 334323..334598 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig156:334165..334604-
coding sequence from alignment at P-littoralis_Contig156:334165..334604-

protein sequence of mRNA_P-littoralis_Contig156.109.1

>prot_P-littoralis_Contig156.109.1 ID=prot_P-littoralis_Contig156.109.1|Name=mRNA_P-littoralis_Contig156.109.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=92bp
MGFTNKLRMRKHWSASPLHNCPPLRECMQRDFFELLYCRFLHCSDGNAPP
RWEDEGENIPNPNFDSKWHIRWLNTCHFVSLPLFPSWVPGV*

mRNA from alignment at P-littoralis_Contig156:334165..334604-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig156.109.1 ID=mRNA_P-littoralis_Contig156.109.1|Name=mRNA_P-littoralis_Contig156.109.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=440bp|location=Sequence derived from alignment at P-littoralis_Contig156:334165..334604- (Pylaiella littoralis U1_48)
CTGACGATGGGGTTCACCAACAAATTGCGCATGAGGAAGCACTGGAGTGC
ATCGCCCCTCCATAACTGCCCTCCACTGCGGGAGTGCATGCAGCGCGACT
TCTTCGAGCTCTTGTATTGTCGGTTTCTCCATTGTTCGGATGGCAACGCG
CCGCCGCGCTGGGAGGATGAGGGAGAAAATATCCCGAACCCGAATTTCGA
TTCGAAGTGGCACATCAGGTGGCTCAACACGTGTCACTTCGTTTCGTTGC
CTCTATTCCCGTCGTGGGTTCCGGGCGTTTAATGTTGGCTTGAAAATTTG
CACGCTTGACGGCTGCAAACTATCATGTTTGCAGTCAGGGTGCATGCAAA
GACGCTGGCTGTTTGTTGGACGTACTCACATCATTGTCAGATTGTAGGCA
GAGAACCGTCGGAAAAGATGGAACGGTCTTTTGGGGGTTC

Coding sequence (CDS) from alignment at P-littoralis_Contig156:334165..334604-

>mRNA_P-littoralis_Contig156.109.1 ID=mRNA_P-littoralis_Contig156.109.1|Name=mRNA_P-littoralis_Contig156.109.1|organism=Pylaiella littoralis U1_48|type=CDS|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig156:334165..334604- (Pylaiella littoralis U1_48)
ATGGGGTTCACCAACAAATTGCGCATGAGGAAGCACTGGAGTGCATCGCC
CCTCCATAACTGCCCTCCACTGCGGGAGTGCATGCAGCGCGACTTCTTCG
AGCTCTTGTATTGTCGGTTTCTCCATTGTTCGGATGGCAACGCGCCGCCG
CGCTGGGAGGATGAGGGAGAAAATATCCCGAACCCGAATTTCGATTCGAA
GTGGCACATCAGGTGGCTCAACACGTGTCACTTCGTTTCGTTGCCTCTAT
TCCCGTCGTGGGTTCCGGGCGTTTAA