mRNA_P-littoralis_Contig156.93.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.93.1
Unique NamemRNA_P-littoralis_Contig156.93.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig156.93.1 vs. uniprot
Match: D7FUB8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUB8_ECTSI)

HSP 1 Score: 349 bits (896), Expect = 7.550e-113
Identity = 190/233 (81.55%), Postives = 203/233 (87.12%), Query Frame = 2 
Query:   20 MARSAACVFAATIMAPSITAFVSMGGARFALAPQAAAGAAEGASSPC--GGSWRPAAAAGPLSMAIRAIESYNADFQLEEKTAATLDKYLRHKDMLAEVCKQFDCESAEYTGEIFQPVPYSQATPQGMPADIEEKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVEGLSENAREVLKERVLRLRENEKRKKEDAELETPWDDIGSAFTEVHNMPVGSDDDDVDLDSMVV 712
            MARSAA V AAT +  S TAFV MGGAR + APQA    AE  S+ C  G     AAA  PLSMAIRA+ES+NADF+LEEKTAATLD YLRHKDM+AEVCKQFDCESAEY GEIFQPVPYSQATPQGMP DIEEK+FLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKV+GLSE+A+ VL ER+LRLRENEKRKKE+AELETPWDDIGSAFTEVHNMPVGSDDDDVDLDSMVV
Sbjct:    1 MARSAAYVLAATAIVSSTTAFVPMGGARLSSAPQAT---AERRSATCRRGRQTDAAAAVAPLSMAIRAVESFNADFELEEKTAATLDGYLRHKDMIAEVCKQFDCESAEYVGEIFQPVPYSQATPQGMPKDIEEKFFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVDGLSEDAKAVLNERILRLRENEKRKKEEAELETPWDDIGSAFTEVHNMPVGSDDDDVDLDSMVV 230
[Close]
BLAST of mRNA_P-littoralis_Contig156.93.1 vs. uniprot
Match: A0A836CAF1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAF1_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.170e-32
Identity = 75/130 (57.69%), Postives = 88/130 (67.69%), Query Frame = 2 
Query:  173 RPAAAAGPLSMAIRAIESYNADFQLEEKTAATLDKYLRHKDMLAEVCKQFDCESAEYT-GEIFQPVPYSQATPQGMPADIEEKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVEGLSENAREVLKE 559
            R  A A  LSM I+A+  Y++ F L E+  A L  YL+H DM  EVCKQFD  SAEY  GEIFQPVPYS  TP GMP   E +Y  ++ Y IAN+PPVVMF AKIFKPSRLCAV++V G S  A   L+E
Sbjct:   40 RRTAPATALSMGIKAVRDYDSSFTLSEECTALLTAYLQHPDMAKEVCKQFDLTSAEYVDGEIFQPVPYSPNTPHGMPLAFE-RYLNHDDYVIANVPPVVMFKAKIFKPSRLCAVFRVAGRSAAAVAALRE 168
[Close]
BLAST of mRNA_P-littoralis_Contig156.93.1 vs. uniprot
Match: A0A6U4Q2X6_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4Q2X6_HEMAN)

HSP 1 Score: 130 bits (327), Expect = 1.460e-30
Identity = 80/176 (45.45%), Postives = 104/176 (59.09%), Query Frame = 2 
Query:  197 LSMAIRAIESYNADFQLEEKTAATLDKYLRHKDMLAEVCKQFDCESAEYTGEIFQPVPYSQATPQGMPADIEEKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVEGLSENAREVLKERVLRLRENEKRK---KEDAELETPWDDIGSAFTEVHNM-PVGSDDDDVDLDSMVV 712
            L M I+A+E +   FQL ++  A L ++L    M   V KQ    +AE+TG++FQPVPYS  TP GMPAD E+ YFLN  Y I N+PP +MF AK FKPSRLCAVY ++G+      V +E +L  +E   R+          +PW  +G A  +   M PV   DDD DLDSMVV
Sbjct:   69 LRMGIKAVEHFEGGFQLSDEVQAALTEHLTSDKMDLTVEKQAHAAAAEFTGKLFQPVPYSVQTPHGMPADFEQ-YFLNPDYAIINVPPQIMFEAKCFKPSRLCAVYALKGVDP----VHREAILSQKEAVSRRGVAPAPPRGGSPWAGMGGAMADASRMDPV---DDDADLDSMVV 236
[Close]
BLAST of mRNA_P-littoralis_Contig156.93.1 vs. uniprot
Match: W7TX51_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TX51_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.520e-28
Identity = 75/202 (37.13%), Postives = 114/202 (56.44%), Query Frame = 2 
Query:  173 RPAAAAGPLSMAIRAIESYNADFQLEEKTAATLDKYLRHKDMLAEVCKQFDCESAEYTGEIFQPVPYSQATPQGMPADIEEKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVEGLS-ENAREVLKERVLRL--------RENEKRKKEDAELETP------------WDDIGSAFTEVH-NMPVGSDDDDVDLDSMVV 712
            +P A++  L   +R +E+++  F L  ++   L  Y+  +DM  EVCKQ  C SA +TG++FQPVPYS  TP GMP + E+ + LN  Y I N+PP VMF AKIFKP RLCAV+ +EGL  +  +++L++   R+         +  + K + +E + P            W+ +G A  EV      G ++D+  LD+MVV
Sbjct:   36 KPPASSSTLFGGLRGVETFDGAFTLSPESEGVLVGYMECEDMKKEVCKQAKCTSARFTGQLFQPVPYSPGTPLGMPREFED-FHLNPSYAICNVPPTVMFKAKIFKPPRLCAVFTIEGLDPDEEKKILEKARARMDLQAQAAAHQPMEEKDDGSEEKRPVTVLKGSPKEENWNGVGKALHEVALGEKAGEEEDEAALDAMVV 236
[Close]
BLAST of mRNA_P-littoralis_Contig156.93.1 vs. uniprot
Match: A0A8J7F1K5_9CYAN (Uncharacterized protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A8J7F1K5_9CYAN)

HSP 1 Score: 118 bits (296), Expect = 5.830e-28
Identity = 57/105 (54.29%), Postives = 78/105 (74.29%), Query Frame = 2 
Query:  203 MAIRAIESYNADFQLEEKTAATLDKYLRHKDMLAEVCKQFDCESAEYTGEIFQPVPYSQATPQGMPADIEEKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYK 517
            MA++ I+S++++F LE +  ATL + L ++  L +VC+Q  CE  E+T  +FQPVPYS ATP+GMPA+ E KY  +E+Y I N+PP  MF AKIFKPSRLCA+YK
Sbjct:    1 MALKIIQSFDSNFTLEPQAKATLFELLTNESFLKQVCQQSKCEQVEFTELLFQPVPYSSATPKGMPAEFE-KYHESEEYIILNVPPNFMFQAKIFKPSRLCAIYK 104
[Close]
BLAST of mRNA_P-littoralis_Contig156.93.1 vs. uniprot
Match: A0A0S3TRB2_9CYAN (Uncharacterized protein n=10 Tax=Hapalosiphonaceae TaxID=1892263 RepID=A0A0S3TRB2_9CYAN)

HSP 1 Score: 113 bits (283), Expect = 3.550e-26
Identity = 55/111 (49.55%), Postives = 77/111 (69.37%), Query Frame = 2 
Query:  203 MAIRAIESYNADFQLEEKTAATLDKYLRHKDMLAEVCKQFDCESAEYTGEIFQPVPYSQATPQGMPADIEEKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVEGLSE 535
            MA++ IE++++ F LE +    L K L  +  L ++C+  +CE  E+T  +FQPVPYS ATP+GMPA+ E KY  +E+Y I N+PP  +F AKIFKPSRLCAVYK  G+ +
Sbjct:    1 MALKIIENFDSSFTLEPQAKENLFKLLTSEAFLNQICQNLECEQVEFTELLFQPVPYSIATPKGMPAEFE-KYHESEEYVIINVPPNFIFTAKIFKPSRLCAVYKKLGIGD 110
[Close]
BLAST of mRNA_P-littoralis_Contig156.93.1 vs. uniprot
Match: UPI001CCA52C6 (hypothetical protein n=1 Tax=Kovacikia minuta TaxID=2931930 RepID=UPI001CCA52C6)

HSP 1 Score: 112 bits (280), Expect = 8.780e-26
Identity = 51/105 (48.57%), Postives = 75/105 (71.43%), Query Frame = 2 
Query:  203 MAIRAIESYNADFQLEEKTAATLDKYLRHKDMLAEVCKQFDCESAEYTGEIFQPVPYSQATPQGMPADIEEKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYK 517
            M +R I+ ++ DF L+ +  ATL + LR++  L +V +Q  C   E+T ++FQPVPYS ATP+GMPA+ E+ Y+ ++ + I N+PP  MF AKIFKPSRLCA+Y+
Sbjct:    1 MPLRIIDDFDGDFTLDPEAEATLFELLRNEAFLQQVAQQLQCPKVEFTEQLFQPVPYSAATPKGMPAEFEQ-YYASKDHAIINVPPNFMFKAKIFKPSRLCAIYR 104
[Close]
BLAST of mRNA_P-littoralis_Contig156.93.1 vs. uniprot
Match: A0A7S0VGI5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VGI5_9CRYP)

HSP 1 Score: 113 bits (282), Expect = 1.180e-25
Identity = 58/119 (48.74%), Postives = 77/119 (64.71%), Query Frame = 2 
Query:  197 LSMAIRAIESYNADFQLEEKTAATLDKYLRHKDMLAEVCKQFDCESAEYTGEIFQPVPYSQATPQGMPADIEEKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYKVEGLSENAREVL 553
            L M I+A+E++   FQL ++    L  +L    M   V KQ     AE+TG++FQPVPYS  TP GMPAD EE YFL+  Y I N+PP +MF AK FKPSRLCAV+ ++G++   RE +
Sbjct:    4 LRMGIKAVENFEGGFQLSDEVREALTGHLTSDKMELMVEKQAHAADAEFTGKLFQPVPYSVNTPHGMPADCEE-YFLHPDYLIINVPPQIMFEAKCFKPSRLCAVFALKGVAPEQRETV 121
[Close]
BLAST of mRNA_P-littoralis_Contig156.93.1 vs. uniprot
Match: A0A6P1AAG1_9CYAN (Uncharacterized protein n=1 Tax=Kamptonema sp. SIO1D9 TaxID=2607808 RepID=A0A6P1AAG1_9CYAN)

HSP 1 Score: 111 bits (278), Expect = 1.540e-25
Identity = 49/105 (46.67%), Postives = 75/105 (71.43%), Query Frame = 2 
Query:  203 MAIRAIESYNADFQLEEKTAATLDKYLRHKDMLAEVCKQFDCESAEYTGEIFQPVPYSQATPQGMPADIEEKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYK 517
            MA++ +E+++  F L  +T  TL  +L+++  + ++C+Q   E  E+T  +FQPVPYS +TP+GMPA++E  Y+ NE Y I N+PP +MF  KIFKPSRLCA+Y+
Sbjct:    1 MALKIVENFDGSFTLPSETQETLFTFLKNEKFIQQICQQVKAEKLEFTELLFQPVPYSISTPKGMPAELES-YYNNEDYAIVNVPPNLMFQCKIFKPSRLCAIYR 104
[Close]
BLAST of mRNA_P-littoralis_Contig156.93.1 vs. uniprot
Match: K9ZHI2_ANACC (Uncharacterized protein n=1 Tax=Anabaena cylindrica (strain ATCC 27899 / PCC 7122) TaxID=272123 RepID=K9ZHI2_ANACC)

HSP 1 Score: 110 bits (276), Expect = 2.870e-25
Identity = 49/105 (46.67%), Postives = 75/105 (71.43%), Query Frame = 2 
Query:  203 MAIRAIESYNADFQLEEKTAATLDKYLRHKDMLAEVCKQFDCESAEYTGEIFQPVPYSQATPQGMPADIEEKYFLNEQYGIANIPPVVMFNAKIFKPSRLCAVYK 517
            M+++ ++++++ F L  +   TL K L  +  L+++C+ + CE  E+T  +FQPVPYS ATP+GMPA+ E+ Y  +E Y I N+PP  MFNAKIF+PSRLCA+Y+
Sbjct:    1 MSLKIVQNFDSSFTLAPEAQETLFKLLTSESFLSQICQNWQCEKIEFTEMLFQPVPYSPATPKGMPAEFEQ-YHKSEDYTIINVPPNFMFNAKIFRPSRLCAIYR 104
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUB8_ECTSI7.550e-11381.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAF1_9STRA1.170e-3257.69Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6U4Q2X6_HEMAN1.460e-3045.45Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
W7TX51_9STRA1.520e-2837.13Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A8J7F1K5_9CYAN5.830e-2854.29Uncharacterized protein n=2 Tax=Cyanobacteria TaxI... [more]
A0A0S3TRB2_9CYAN3.550e-2649.55Uncharacterized protein n=10 Tax=Hapalosiphonaceae... [more]
UPI001CCA52C68.780e-2648.57hypothetical protein n=1 Tax=Kovacikia minuta TaxI... [more]
A0A7S0VGI5_9CRYP1.180e-2548.74Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A6P1AAG1_9CYAN1.540e-2546.67Uncharacterized protein n=1 Tax=Kamptonema sp. SIO... [more]
K9ZHI2_ANACC2.870e-2546.67Uncharacterized protein n=1 Tax=Anabaena cylindric... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:297851..306436 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FUB8
Model size2192
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons7
Evalue9.58e-121
EggNOG OGs2D7JV@1|root,2ST2X@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_000820.1
Cds size696
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.93.1prot_P-littoralis_Contig156.93.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 297870..304875 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789746.0206099-UTR-P-littoralis_Contig156:297850..2978691680789746.0206099-UTR-P-littoralis_Contig156:297850..297869Pylaiella littoralis U1_48UTRP-littoralis_Contig156 297851..297869 +
1680789746.1249871-UTR-P-littoralis_Contig156:304875..3049141680789746.1249871-UTR-P-littoralis_Contig156:304875..304914Pylaiella littoralis U1_48UTRP-littoralis_Contig156 304876..304914 +
1680789746.1347175-UTR-P-littoralis_Contig156:304998..3064361680789746.1347175-UTR-P-littoralis_Contig156:304998..306436Pylaiella littoralis U1_48UTRP-littoralis_Contig156 304999..306436 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789746.0355778-CDS-P-littoralis_Contig156:297869..2979451680789746.0355778-CDS-P-littoralis_Contig156:297869..297945Pylaiella littoralis U1_48CDSP-littoralis_Contig156 297870..297945 +
1680789746.0482402-CDS-P-littoralis_Contig156:302180..3023411680789746.0482402-CDS-P-littoralis_Contig156:302180..302341Pylaiella littoralis U1_48CDSP-littoralis_Contig156 302181..302341 +
1680789746.0623863-CDS-P-littoralis_Contig156:302834..3029251680789746.0623863-CDS-P-littoralis_Contig156:302834..302925Pylaiella littoralis U1_48CDSP-littoralis_Contig156 302835..302925 +
1680789746.0790515-CDS-P-littoralis_Contig156:303404..3034931680789746.0790515-CDS-P-littoralis_Contig156:303404..303493Pylaiella littoralis U1_48CDSP-littoralis_Contig156 303405..303493 +
1680789746.0958989-CDS-P-littoralis_Contig156:304312..3044521680789746.0958989-CDS-P-littoralis_Contig156:304312..304452Pylaiella littoralis U1_48CDSP-littoralis_Contig156 304313..304452 +
1680789746.109523-CDS-P-littoralis_Contig156:304736..3048751680789746.109523-CDS-P-littoralis_Contig156:304736..304875Pylaiella littoralis U1_48CDSP-littoralis_Contig156 304737..304875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.93.1

>prot_P-littoralis_Contig156.93.1 ID=prot_P-littoralis_Contig156.93.1|Name=mRNA_P-littoralis_Contig156.93.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=232bp
MARSAACVFAATIMAPSITAFVSMGGARFALAPQAAAGAAEGASSPCGGS
WRPAAAAGPLSMAIRAIESYNADFQLEEKTAATLDKYLRHKDMLAEVCKQ
FDCESAEYTGEIFQPVPYSQATPQGMPADIEEKYFLNEQYGIANIPPVVM
FNAKIFKPSRLCAVYKVEGLSENAREVLKERVLRLRENEKRKKEDAELET
PWDDIGSAFTEVHNMPVGSDDDDVDLDSMVV*
back to top

mRNA from alignment at P-littoralis_Contig156:297851..306436+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.93.1 ID=mRNA_P-littoralis_Contig156.93.1|Name=mRNA_P-littoralis_Contig156.93.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8586bp|location=Sequence derived from alignment at P-littoralis_Contig156:297851..306436+ (Pylaiella littoralis U1_48)
AAACGAGGAAGAGAGAGCCATGGCGCGATCAGCGGCGTGCGTATTCGCAG
CTACGATCATGGCGCCTTCGATCACAGCCTTCGTATCAATGGGAGGTAAG
AGCATGCATGGGTCATGCTGTCTTCATCCTTCGGCGGTGTTGCGCCGCCG
TGGCACTTATGCTGGGATGCGCTGTACATATCGGCCAAGTGTGTGTGTAC
ATACTCGTAGCGGAGCGTCGTGCAGCGTGGTTTGGTTGCCCATTGCTGCT
GTGTGGTTAATCATACGAGAAACATTGGTAGGGTGCGTTCGTTCTTGCCT
CTCTGCTTTTCCACGTCTTGTTGGTCGGAAGTGGGTGTGAGACAAGCGAT
GCCTCTCGTCCTGCGGCTTCAACCTTCTTTCTACAAACGAGGTTATGATA
AATCGACGTGTCCGCGTCCACACAGATACTCTGCACCAGTTGTCCCAGCT
CGCGTAGCGTGTGTGTTGGAGTGGTATGCGATCCAGGTGCTGGCCAGAGA
GGATGTCGTGGCAGCCCCCCTACTCTCTGCACAGCTCGCATTGCCTGCCG
CATACTGCTGTTGACAATGCTGTGCATTCCTTTATTTACATCATGTTATG
GGACATGAAGGCAGCATGTTCCGTCTCTCCCTTGACGATCTCCTTGCGGT
ATCGTATGTATCATGGCAAACATGCGAAAGTCACCAAACCCACAGCTCGA
AGTTCATAAGGAAACCCGACCGAAATCCACGGCCCGTTCTGCGAGTGCCA
ACAACGATTGATGGAACGCACACAACACAACGAAACTGCTTCAATAAACA
TGGACCTGACCCCCAAGCTCTGCAATATCAATTGACAGAGAGAGAGGGAG
CAGTTTCAAGGCAGTTCATGAGCTGGTTCTGCTGCTATCCATATGATATG
TAGCTCATGGAAGTCTAAGCTAAGTCGGTATCTGGCACACACGCGACCAA
GAAGATACAAACAAATCCCGCTGGTGGCATAGTCCATCTCGCGCTCTCAA
AATAGCCCACCGATCGTGCCGCTGCCACGCCCCTTGTGGTGGGCGGTACG
CGCAACCCCGGGCGTCGCAGTGGATTGATTGAGAAACGCCTTTAGTGGAA
GAGGTATGACCCTGTGTAAGCTCACATTTTGGGGAAACGACACAACGGGG
TGCACCCCGGTCATTCTGCGACTCAACAGGGTGCATACCTTTCCCGAGCG
TGAAACGAACCAAGCTGATTGGTCAAACCTCGAAATCACCCTGTTGAGAC
GGCAAAGTGCCCGGGTTTGTTGTTGTTGATTCTCACATTAGCTCACTACC
GCCGCAGTCTAGCCCGTGGTCACAAACCAGGCACATATCGTGCTAGGAGG
AAAAAATAAAAAAATAAAATATACGGACTATGATCACCCACAGTCAGATC
AGACGTGGTACCGTTACCATCTGTGGTGGCCAAAGCACCAAACAAATACA
GGAAAAATAATAACAGGCTCGTAAGGAAAACAAAAATTGGAAACAGTCCG
ACAAACAAAAAATAACCAAGACAAACCTCAGCCATAACCATATACTTCGA
AGTACTTCGTACATCGAACCAGGGCCCAGGGCCATGACAGACCAAGGCAA
ACACAAACCAGGGCGATGGTCCAGTAACTACATGATCAACAGACGAAAGA
CAAAAAAATAAAATAAAAAAGAAGAAGATACAGGGAGGGCACAAAGACTG
AGGGAGTGCATTCGTACACAAACACAACAAACAGGCCGCCAAACGAAGAG
GAAGCAAGGGAACGAAAAGGGAAAAGAATACCGGAAGTACCGGAAGTCGG
GGGGGTGGTGAAAAAATAAAATATTAGGCATGCAATCAATCGCAAACGTG
TCTTGCCACGAGGTCTGCCTGTTCACGCTTGCTCTCCTCAGTCGCACTCA
TGCCTTCTGCTACTGGCACCACCATACCCAGTTGTTTCTGCCCCACATCT
TTGGCAGCAGCTACACCACCACTCCGCCCTACAGGTTTTCCACTCCGGCC
ACCCCGTAGCTTGGCTTTGGACTGCTTCTTCTTGTGCTGTGCAACTCCAA
CCCCACTACCCCGCTGCCCTTGTGCCCCCCCGTACTCCTCCTCTCGTTTA
TCCCCGCCATCCGTTCTCCCTCTTTTAGTCAAGGCCTGCCTCTCAGCCGC
GTCCCTCTCTCTTTTCCGTCGACGTGTCTCTGATAGGTCTCCCTCTTTCT
TGAGCCACTCGTCCGTGAACCGCCGCGCACCCTCGTCGATCCTGTCGTAC
CACTCGTCAGCTCTCTTGGCACTTGCCTCCCACCCCTCCTTTTTGTCGAC
CACGATGTCGAACGCTTCGAGGTCCTCCTGCATCCGTGCACCTCGCGAAG
GCTACTTTTCTTCAGAACCACACCCTGATTTTTGAAAAGCACCCTGTTGT
GTCGGAAAAAGAAACCCCTCCACCGGATATTCCTCCCGCAGGAATCACTT
TCCGCACCCGTCAAAGGGCATCGAATATGAGATCTTCCACCGCCAAACAT
ACAACAATGGTGTACACCATGATGACCGCCACGACGGACCTACCGCATAC
CCCTCCACATCAACTCTTCAGGCTCTAAACATACAAAAGCACACTGCTGT
TCCAACAGATCAGAGTGCCGTTGCCAGCAAACAAACTGCAGATCCGCCGA
CAGCAAACAGAGAACACAATTGTTGACCCTGCTGCAAATACTCGTAGAGC
ACACAAGAAGAACAGAAGGTGGTGTTGTGCCTTCTGTGTGTCCTTGTTTA
TAGTAAAGGGACAACGTGCGTCAAAGATGGTTGTGTGGTTCCCTCTCTGT
TCAGTGCATCGATATTGGATGGGTCTCCCTCTCACATTAGTCGACTTTTA
TTCCTCCTGTTAGTGTGTGTGCCTCCTCATTCCAGTACTCTTTGCTCTCT
GGTTCCGACATCTACTTGTGTCTGCACTGCTGTGAGTCGCGTGTCCTGTC
GTTACATGTGTCCGTCTGTTGTACTGACTGGCAGTTGTGTAGCTTTGTCG
TTCTTCTGCGTTCTTCTTGTGTGCTCTACGAGTGCTTGCAGCGGGGCCAA
CAATTGTGTTCTGTTTCGGGCTGGTGTCTTCTGTTTACTGTCGGCGGATC
TGCAGTTTGTTTGCTGGCAACGGCACTCTGATCTGTTGGAACAGCAGTGT
GCCATTGTATGTTTAGAGCCTGAAGAGTTGATGTGGAGAGGTATGCGGTA
GGTCCGTCGTGGCGGTCATCATGGTGTACACCATTGTTGTATGTTTTGCG
GTGGAAGATCTCATATTCGATGCCCTTTGACGGGTGCGGAAAGTGATTCC
TGCGGGAGGAATATCCGGTGGAGGGGTTTCTTTTACCGACACAACAGGGT
GCTTTTCAAAAATCAGGGTGTAGTTCTGAAGAAAAGTAGCCTTCGCGGGG
TGCACCCGGGCACTTTTCCGTCTCAACAGGGTGGTTTCGAGGTTTGACCA
ATCAGCTTGGTTCGTTTCACGCTCGGAAAAAGTATGGACCCTGTTGAGTC
GCAGAATGACCAGAGTGCACCCCGTTTTGTCGTTTCCCCTCACATTTTTA
CCTGGTACCTTATTTCGTGTCTCTAGTTTTGAGGATACGCACAGCAGTAT
CGTACCTTCGCAGTACATGATGATAGTATTTTCATAACTCACATCCGTAT
CAGACTTTCTTGCCGTCTATGTGCCCGTTTTGGTACATCCTTCGAAGCAG
CGTAGACTACTGCTTTACTGCTGTAACCCTATATATTTATTTGCAAGGCT
GCTTGGGCGCTGCTTAGTTACCGTGGCACGTCAGAGAATATTAAGTGACA
ACAGCCCAATGGACAAAGTATATCACATGATCTTTTGATAAATGTCGTGT
TATATTTATTGTTGGGTCTGCGTGTGTGTATCATATCACTTATGATACCC
TCTTTATATAATGCCTCCCGCCGCTCGTGCACTGTTGGCATGTTGGTTTT
GAATCATCTTATGTTTGTTTCCTTTTTTGTGTGCATGACGATACACACCC
GTATTCTCACGCCCTCAAAAGCGCTGGCCCTAGATTCGCTCGAGTGCCGC
TACCACCGGCCCCGTAGTGCGTCGGAGAGGATCGATCGTGAAGAAGCCAT
AAACAAAACATATTTTCTGCCCACTTATATCGTGTACTCATCTGCGTTGC
GTGCGTTTGGCTTCTTGGTATCTGGCCGTACGCCCTGGGGTGCTTTTTAG
CGTCTCGCATCTTACACCGAGGTGTGGCCTTCTGTACATTTTTATTTTTT
ATTTCGTGTACGCACATCTCACTATACTCCCTGCCGTGTTATGTTTGGTA
TTGCTGCATGATTTACCCGTTGTTTTGTAGGCGCAAGGTTCGCTTTGGCG
CCGCAAGCAGCAGCAGGAGCAGCAGAGGGCGCATCAAGCCCGTGTGGAGG
GAGCTGGCGACCAGCTGCAGCAGCTGGTCCGTTGTCGATGGCCATCCGGG
CCATCGAGAGCTACAACGCTGATTTCCAGCTCGAGGAAAAGGTATGTACG
GGCGGTGCTGCTTGGTCTGGAGTAGCTTGGTGTGGTATGTTCTGGTTGGC
ATGGTGGTTTGAAGTTTTTTTTTTTGGGGGGGGGGGGGGTCGAATCGCTC
GCGAGGAAAACATTGAAACATCGACGAGAAAACGCTCACCCACATGAAAC
CGGACACACAGATGTCCTTTCAGCCCGGCCGGGGAATCCGTTCTCGGGGT
TGCGTTCCAGACGGTTGCGGTCGTCGGAGAGCTTTGAGAGTTGCGTGAGG
GAGCCCCGGTCTATCATACCGATATGTGTCTGCTGTATTTGTGTACAGCA
GTATCATGGTGTGCTTCGCGGTTGCCGTGAGCAGCAACGTAACACCTGCG
GAGGGTGGCAGCAAACGCGGAGAGTGAGAGTGACTTAACTTCTATCGTGC
TTTCAGGTGCAACCAGGGTATTTCTGAGGTATAGTGTATCATCGTGCCTG
TCTACCGGTGTCTTGCCGGTTTTGCCCCCTGCAGACGGCGGCTACCCTTG
ACAAGTACCTCCGGCATAAGGACATGCTGGCGGAGGTGTGCAAGCAGTTC
GACTGCGAGAGCGCCGAATACACCGGTGAGTGGAGATCGGCAACCTCTTC
CATTTTTTTGTTGCTGTCGTAGTCAATGATTCCCACGTTAGCTCATCGCC
AAAATCTAGCTCTCGGTCGAAAGGCAAGCACCGAGAATACCGTCCCACAT
CAGATGAAACCGATAAATAAATGGCTTGCGGGCCCCGGACACGCCATATC
CGAAGGCGAAGCGAGCGGCAGAAAAGAAGAGGACAGCAACATACACGGGA
GGCATGGTGCGTGTAGACAACGGTAGAGACAACGGCAGCGGTATTTGCTC
AAGTTTGTCATATTCTCCTGTTTTGGCAGGGCGCCTCGCTTCAGCTGCTG
GCGCGGGATTCCGATTTCCGGGCTCATCGTGAGTGGTGGTGCTATCGCGT
GCATGGGCACATGACGTGCTTCCTTCTGCGGAAATGACAAGCTGCATTGA
CGTGTATTGTTCTGTTGTGCATAATTTTCACCGATCTGTTTGGTGTATAA
CCAGGCGAAATCTTCCAGCCGGTGCCGTACAGCCAAGCCACTCCCCAGGG
GATGCCCGCCGACATCGAGGAAAAGTATTTCCTCAACGAGCAGGTGAGTC
CGTGCGTGCATGTGTGTGTGTGCGCGCGTGTCCGTTTGAGACCGCCGTTT
TTGCTGCCGTGTGCGTGTGCTTGTGTGTCTTGTCATCCCATCTAATTTGC
ACTTCTGAAGTATTGCGGAAGCCAGTCTGCACCTTTCGGTGTAGGTTGGA
CGCACCCGCCGGGGTCACACAAACAAGAATATCACACATTTTTGCATGCT
GTGCGTGTTCATGTTTGGTTGTCCCCTCGCATTTTCCTGCACACGCGAAA
TCTTGGCAGTGTCGTTGTCCTTGTGTAGGCAGTGCTGCACCGACAGTTTC
TGTTATCCTGTGTGTTTCTCGACACCTCATATAATACCTGGTGCGTACAT
ATGATAGCGGTTTCCATCGCGCGCCATGTGCATCTTACGTCTGCACGTAT
CATACCAAGCCCTGTGTCTACCCTAGCCACAGACAGCAGCACTCGAGATC
TCTCTCTCTGTGCGCATTTGCGCCATGTTTTGCGTTGCATTTGGAATATT
ACACCCGTACATGTTCTGTGGTATGTGTCACCGAATTTTTATTGGTTGTC
CCCGCCAATGTTATTTGCGTCTTGACGTTTTTTTTTACAAGTTAGCGGCA
TGGTATCGCCACTATCCCTCCCGCGAGGCGGTCTATGCCCGACAGCAAGC
ACTTTTCACGTGCGGCGTTTGCGTGCATGTTCACCAGTTTTTCCTACAAC
TACTACTGTACACGGATGTATTTCTACCCGTCTATGTACCTTGGCTTTTT
TTTATTTGGTTGTCCTCGCTTGTTCCGCTCGCGCGTCGAAAAAATAATAA
AAAAACGTTCAGTACGGCATCGCCAACATCCCTCCCGTGGTGATGTTCAA
CGCCAAGATTTTCAAGCCGTCCCGGCTGTGTGCGGTGTACAAAGTGGAAG
GGTTGTCGGAGAACGCCCGAGAGGTCCTCAAAGAGCGGGTTCTGCGCCTC
CGGTACGTACGTAGCTATCGTTGTACGACATTCGTGACGGCTGCACTGCA
CTACCTCAGCACTACCACATGCTTGATTTCATGTTCCCCTCGTAGGAAAC
CCAGCCTTGATTCTTCTCAACGATGTCTTGTTAGGCGTCCCGTATCGTGC
CGTGAGCACATTCAACACAACAGCAGTTAGTTGTGTTTTTAGTTTCACGT
GCATCGCGTCAACGAACGGCGCTCACCGCCAACGAGCGTTGAACGGTACG
CACGCCAACGGTACGCTAATGGAATTACCGTTTCAGGGAGAACGAGAAGC
GCAAAAAGGAGGACGCGGAGCTGGAGACCCCTTGGGACGACATCGGCAGC
GCCTTCACCGAGGTCCACAACATGCCCGTCGGATCGGACGACGACGACGT
CGACCTCGACAGCATGGTTGTGTAGTCGGACCAGATCACCGCATTAGGGA
GTTTCGTGCATCCGGTAGATTTGTGATACGGATGGTGGTTTTTCGTTCTA
CTCATTTTTGCCGAAGCCCCCCCCCCCCTCATATCCCTCGAACGGTGCTG
CCACATGGCTCGCAAGGAGGCAAAGCCGGTGGTCAAGTGACAAAGGCTAC
CGACAGGCAACCGTTGAGAACCCCCCCCCCCCATCTCCGCTTCCTCTCTT
AGAAGGAGAGCGGGATTCAGTTGAGGCTGGCGGGGCCATGTACCCCAGGG
CTTATTTTACTTCAACAGCCGAGTCGATTCCTGTCGGATCGACTTCTGTG
TCGAGCATGTCTGACAGCACCTCGAACATTTCTGGTGGTGCACCACGAGC
ATGTCTGGTGACAGTTAGTAGTTGATATCAGTGATTCGATGTGCTTGTCA
ATAAATATGGCGTGTTTTTCAGTTTTGACTGTACGGTGGTTGTTCGGCGT
TTGTTGACTCGACTCCGACGGTGCAGGTAGATGGTGCGTTGCGCTATCGG
TCGAGCTTGCTGCAGTAGAAGCATGCCATTTTTTCATTTTTTTTCCTGAG
CTTCGTGAAACATCATTAACGTCGGCCGAATCAGGCTTTGTTCCTCAAGG
AAGTATTCGAATTGGTGGCACGCGTGCCGGGTTCGGTTTGTTGGCCATCG
TCACGTAAGGCCTTTAAAAGAGGCGTTTTTTTTGTTGCTGTCGCTGTCGT
GTGCAACGGCAATGAGACGCGGTGTGCTCAGAAGAATCGCGGAAACTCAC
TTGTACTTGCACGCATTTTTCGGTTGGTATCTCCGAATTTTGGTTTATCT
GCAGAGATTTGTGATTCGTAGCCTACGTGCAAGATACGGCCTCGTACTGA
ACTATGTGGCCAGGTCATGAGGGACATCAGACATCATCATCTTGGGGCGA
AGTATCGTGCGAGATACATCTTCCAAAAAATCGAAGACGTCGAAGAAGGG
ATGCCCTCTGTACGGCTGTGGTTTATGGATGGGACGACTTCACATCACGG
CCTGACGCGGATTGTCGTTCGTACGAGCAATTGTTGGGAAATTTATTTTA
AACATCAAAGAAGAAAACGCCCACGTACATACGACGGGACTCACGGGGAT
AATTCTTGAATACCGGTACCTTTCAGCGAGGGTGTCGGGTGTCCCGTCCT
GTGCGGCCGGAAAAAAACAAGCTGTTGCGTCGACTCTGAAAAAGAGGAGC
TGGCGACACAGGCACCCAATCGTAGGTCGGTTTGTAGGTGTCAGAAAAAT
TAGAAAGGGTTTCGTTGTATGATACATGTGCATGCGTGCGTGTGTGGTTA
GCGTGCGTTGTGGCCCCATCGAAAACAGTTTTGATCTGTGCTCCAGAAGT
GCCTTCTCAAGTCCCTACAGCTGAGTCAACTGTATTTCTTCCCGTGTCCT
CCCCTCTTCATGGCTGGCATGATGACGATATAAATCATGAGCGAGGGGTT
GTCCAAATAAGCCCGGCCAGTTTTGGATGTAGTTGTTCCTTGGGGACCTC
CCGATTCCGCGCAGTCGTGGTTCAACTGTTTCCACA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig156:297851..306436+

>mRNA_P-littoralis_Contig156.93.1 ID=mRNA_P-littoralis_Contig156.93.1|Name=mRNA_P-littoralis_Contig156.93.1|organism=Pylaiella littoralis U1_48|type=CDS|length=696bp|location=Sequence derived from alignment at P-littoralis_Contig156:297851..306436+ (Pylaiella littoralis U1_48)
ATGGCGCGATCAGCGGCGTGCGTATTCGCAGCTACGATCATGGCGCCTTC
GATCACAGCCTTCGTATCAATGGGAGGCGCAAGGTTCGCTTTGGCGCCGC
AAGCAGCAGCAGGAGCAGCAGAGGGCGCATCAAGCCCGTGTGGAGGGAGC
TGGCGACCAGCTGCAGCAGCTGGTCCGTTGTCGATGGCCATCCGGGCCAT
CGAGAGCTACAACGCTGATTTCCAGCTCGAGGAAAAGACGGCGGCTACCC
TTGACAAGTACCTCCGGCATAAGGACATGCTGGCGGAGGTGTGCAAGCAG
TTCGACTGCGAGAGCGCCGAATACACCGGCGAAATCTTCCAGCCGGTGCC
GTACAGCCAAGCCACTCCCCAGGGGATGCCCGCCGACATCGAGGAAAAGT
ATTTCCTCAACGAGCAGTACGGCATCGCCAACATCCCTCCCGTGGTGATG
TTCAACGCCAAGATTTTCAAGCCGTCCCGGCTGTGTGCGGTGTACAAAGT
GGAAGGGTTGTCGGAGAACGCCCGAGAGGTCCTCAAAGAGCGGGTTCTGC
GCCTCCGGGAGAACGAGAAGCGCAAAAAGGAGGACGCGGAGCTGGAGACC
CCTTGGGACGACATCGGCAGCGCCTTCACCGAGGTCCACAACATGCCCGT
CGGATCGGACGACGACGACGTCGACCTCGACAGCATGGTTGTGTAG
back to top