mRNA_P-littoralis_Contig156.83.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.83.1
Unique NamemRNA_P-littoralis_Contig156.83.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig156.83.1 vs. uniprot
Match: A0A6H5JS69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS69_9PHAE)

HSP 1 Score: 181 bits (458), Expect = 3.590e-47
Identity = 90/191 (47.12%), Postives = 126/191 (65.97%), Query Frame = 3 
Query:  729 VVVRSLLHGPSGFRYMHEFISGPKYKDFFCTMETYDMEVLDGAAAVGIDCFSSMTEDQARVYYLLTLRAIAGEFNDCQQACMPWAAQAFGVKLPCFHPGNSVGGIKGGTVCGGRWSKQTMGPLTPSGSEATMYLSVAVFLHEHAFDSIQKFRETITVRKDGV----FRMS-LPKFNHWVLLLPPANADSLQ 1286
            V+  +L+H       +  FISGP Y  F+CT++ Y  + ++GA  +G      +TE  ARV YLL +R +AGEF+D QQA +PW AQAFGVK+ CFHPG S+  ++GG    G+WSK+ + PL PSG E+T+YL++++  H+HAF SI +F ET    + GV     +M  +P FNHWVL+LPPANA +LQ
Sbjct:  142 VIRAALVH-------LQTFISGPGYGGFYCTLQAYSAKEVEGAWRLGCSKPEVLTESVARVLYLLAVREVAGEFSDSQQAAIPWIAQAFGVKMRCFHPGGSMKDVEGGASFAGKWSKELVSPLNPSGVESTIYLTMSITSHKHAFRSIHEFTETTRRWERGVDGELHQMRWMPDFNHWVLMLPPANAGALQ 325
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BLAST of mRNA_P-littoralis_Contig156.83.1 vs. uniprot
Match: A0A6H5JIG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG7_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 1.150e-46
Identity = 88/189 (46.56%), Postives = 125/189 (66.14%), Query Frame = 3 
Query:  729 VVVRSLLHGPSGFRYMHEFISGPKYKDFFCTMETYDMEVLDGAAAVGIDCFSSMTEDQARVYYLLTLRAIAGEFNDCQQACMPWAAQAFGVKLPCFHPGNSVGGIKGGTVCGGRWSKQTMGPLTPSGSEATMYLSVAVFLHEHAFDSIQKFRETITVRKDGVFRMS--LPKFNHWVLLLPPANADSLQV 1289
            V+  +++H         EFISGP+Y  F+CT++ Y  + +  A ++G D    +TE  +RV YLL +R +AGEF+D QQA MPW AQAFG+K+ CFHPG S+  ++GG    G+WSK+ +GPL P+G E T+YL++ +  H+ AF SI +F ET      G  R +  +P+FNHWVL+LPPANA +LQV
Sbjct:  136 VIRAAIVH-------FEEFISGPEYGGFYCTLQAYSAKEVKAAWSLGCDTPEVLTESVSRVLYLLAVREVAGEFSDSQQAAMPWTAQAFGMKMRCFHPGGSMKHVEGGASFAGKWSKELIGPLKPAGVEPTIYLTMCITSHKQAFSSIHEFTETTV----GGLRQTRWMPEFNHWVLMLPPANASALQV 313
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BLAST of mRNA_P-littoralis_Contig156.83.1 vs. uniprot
Match: A0A6H5JM74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM74_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.640e-39
Identity = 74/138 (53.62%), Postives = 99/138 (71.74%), Query Frame = 3 
Query:  888 MTEDQARVYYLLTLRAIAGEFNDCQQACMPWAAQAFGVKLPCFHPGNSVGGIKGGTVCGGRWSKQTMGPLTPSGSEATMYLSVAVFLHEHAFDSIQKFRETITVRKDG----VFRMS-LPKFNHWVLLLPPANADSLQ 1286
            +TE  ARV YLL +R +AGEF+D QQA +PW AQAFGVK+ CFHPG S+  ++GG    G+WSK+ +GPL PSG E T+YL++++  H+HAF SI +F ET    + G    + +M  +P FNHWVL+LPPANA +LQ
Sbjct:   52 LTESVARVLYLLAVREVAGEFSDSQQAAIPWTAQAFGVKMRCFHPGGSMKDVEGGASFAGKWSKELIGPLNPSGVEPTIYLTMSITSHKHAFSSIHEFTETTRRWERGADGELHQMRWMPDFNHWVLMLPPANAGALQ 189
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BLAST of mRNA_P-littoralis_Contig156.83.1 vs. uniprot
Match: A0A6H5KUZ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ3_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 6.000e-17
Identity = 45/99 (45.45%), Postives = 63/99 (63.64%), Query Frame = 3 
Query:  729 VVVRSLLHGPSGFRYMHEFISGPKYKDFFCTMETYDMEVLDGAAAVGIDCFSSMTEDQARVYYLLTLRAIAGEFNDCQQACMPWAAQAFGVKLPCFHPG 1025
            V+  +L+H       +  FISGP Y  F+CT++ Y  + ++GA  +G      +TE  ARV YLL +R +A EF+D QQA +PW AQAFGV++ CFHPG
Sbjct:   65 VIRAALVH-------LQTFISGPGYGGFYCTLQAYSAKEVEGAWRLGYSTPEVLTESVARVLYLLAVREVACEFSDSQQAAIPWTAQAFGVEMRCFHPG 156
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BLAST of mRNA_P-littoralis_Contig156.83.1 vs. uniprot
Match: A0A6H5KKT7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKT7_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 8.260e-5
Identity = 29/56 (51.79%), Postives = 35/56 (62.50%), Query Frame = 3 
Query: 1134 VAVFLHEHAFDSIQKFRETITVRK---DGVFRMS--LPKFNHWVLLLPPANADSLQ 1286
            + V  HE  F SI +F ET   R+   DG  R    +P+FNHWVL+LPPANAD LQ
Sbjct:    1 MCVTSHEQEFSSIDEFTETTRRRERGLDGELRQKRWMPEFNHWVLMLPPANADVLQ 56
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JS69_9PHAE3.590e-4747.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIG7_9PHAE1.150e-4646.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM74_9PHAE1.640e-3953.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUZ3_9PHAE6.000e-1745.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKT7_9PHAE8.260e-551.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:264261..267424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2420
Hectar predicted targeting categoryother localisation
Exons5
Cds size708
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.83.1prot_P-littoralis_Contig156.83.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 265244..266318 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789745.5770926-UTR-P-littoralis_Contig156:264260..2647971680789745.5770926-UTR-P-littoralis_Contig156:264260..264797Pylaiella littoralis U1_48UTRP-littoralis_Contig156 264261..264797 +
1680789745.5894372-UTR-P-littoralis_Contig156:265007..2652431680789745.5894372-UTR-P-littoralis_Contig156:265007..265243Pylaiella littoralis U1_48UTRP-littoralis_Contig156 265008..265243 +
1680789745.6345358-UTR-P-littoralis_Contig156:266318..2664581680789745.6345358-UTR-P-littoralis_Contig156:266318..266458Pylaiella littoralis U1_48UTRP-littoralis_Contig156 266319..266458 +
1680789745.6437726-UTR-P-littoralis_Contig156:266625..2674241680789745.6437726-UTR-P-littoralis_Contig156:266625..267424Pylaiella littoralis U1_48UTRP-littoralis_Contig156 266626..267424 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789745.6028843-CDS-P-littoralis_Contig156:265243..2654931680789745.6028843-CDS-P-littoralis_Contig156:265243..265493Pylaiella littoralis U1_48CDSP-littoralis_Contig156 265244..265493 +
1680789745.6114306-CDS-P-littoralis_Contig156:265685..2659481680789745.6114306-CDS-P-littoralis_Contig156:265685..265948Pylaiella littoralis U1_48CDSP-littoralis_Contig156 265686..265948 +
1680789745.6203794-CDS-P-littoralis_Contig156:266123..2663181680789745.6203794-CDS-P-littoralis_Contig156:266123..266318Pylaiella littoralis U1_48CDSP-littoralis_Contig156 266124..266318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.83.1

>prot_P-littoralis_Contig156.83.1 ID=prot_P-littoralis_Contig156.83.1|Name=mRNA_P-littoralis_Contig156.83.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=236bp
MHEFISGPKYKDFFCTMETYDMEVLDGAAAVGIDCFSSMTEDQARVYYLL
TLRAIAGEFNDCQQACMPWAAQAFGVKLPCFHPGNSVGGIKGGTVCGGRW
SKQTMGPLTPSGSEATMYLSVAVFLHEHAFDSIQKFRETITVRKDGVFRM
SLPKFNHWVLLLPPANADSLQVVDERAAAVSAGKARNVMEKETAARAAGD
SATQEADKKARQEQKKAADAAAAVSVRKASCSCAG*
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mRNA from alignment at P-littoralis_Contig156:264261..267424+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.83.1 ID=mRNA_P-littoralis_Contig156.83.1|Name=mRNA_P-littoralis_Contig156.83.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3164bp|location=Sequence derived from alignment at P-littoralis_Contig156:264261..267424+ (Pylaiella littoralis U1_48)
ATACACGCTGCCCATTTTGCCTGCCCGTCGCAATTTTCCGAGCAAAAACG
ATACAGGTGTCCACGAGGGACGCGCGAGATGGCCGGGAGCGTACTTAGAG
CAGCTAAGAGGGGGCGTTGAATCGTACAGCGTATCGTGATCTTTTTGTGT
ATGATTCATCCCTCATGATTCAATCGTACATGCACGATTCGAATTGTGCT
TACAGTATTTTCGAGTCATTTGGATGATTGTGGATGATTGAAATTTTTGG
GGAGTCGTCTATCCGTCTTTTTATGAATGGGAATGACTCGTCAGGTCTAC
TACGCCGAGAAGTACCTCGGACACACGGGCAACCGGCCAAGTATATTTTA
CAACGAAGAAATGGAGAGGGGTTGAAAGGTCGACTTCTTGCTTACGATCA
CCCAGATGATCAATGCGGCGCTCGAAAGCGTCAGTTGGACCGGCAGTCTA
CAGAAGAACGAGGTGGCAAACCTTGTCGACTTTGGCGGCAGGTTCCGCCA
AGACTTGGACAGAGCGACACTCGATCCCGTCCGTCCGGTGAGAAAAACTA
ATGCATGTATTTGTAGGGCTTGTGACTCCGACGAGTAAACGGTGGAGGCT
GGAGAGGTTTACATAAGCATGTACGGTAACCGGAGAGACATTCACGGAGC
ACTTTCTATCACAGAATGGAATACGAAACGTCTTTCGGTGGTGTGTCAGC
AGTCTTGTGTTGTCAACATGCCCATACGTTTGCGATCGCCTTTCCAGGGC
TATACGGGACCCTTGAGTGGTTTCGTGGACCCCATCGCGAAGGCCCTACT
GAACGGGGCGGACGCGGTGAATGGTGGAGGCAGGGGGACACCCGTCAAAA
TAAACGGCAACGGTGCTTGCTTCGCAAACGTTTTGGCGCTAGGGCTTTTC
GGACGGAAATGCAAGACCCCTGATGAAGCGCTAGCGATGTCGTTGTCCGT
TCGCTGCTCCATGGTCCGAGCGGCTTTCGGTACATGCACGAGTTCATCAG
CGGACCGAAGTACAAGGACTTCTTCTGCACTATGGAGACGTATGACATGG
AAGTCTTGGATGGTGCCGCGGCCGTGGGGATCGATTGTTTCAGTAGCATG
ACGGAAGATCAAGCGCGCGTCTATTACCTCCTTACCCTTCGGGCTATCGC
TGGCGAATTCAACGACTGCCAGCAAGCTTGCATGCCATGGGCGGCGCAAG
CATTCGGCGTGAAACTGCCTTGCTTCCACCCAGGTGAGTCGGCATTTTGT
CTGGATCGTATGCTCGTTCGTTCATGCAAAAAATGCCCACAATCACCCTT
TTTTCATTAGCCCTGCCCACTGTTCTCGCCTCTCATCTCTGAGCGTTGAC
TGTCACCCGAACTGGTTTGCATGGAATACCAACATGTCATATCTCCGACC
CCGACGTTGGTATCACGAAATGCAGGCAATTCCGTAGGGGGCATCAAGGG
TGGAACGGTATGCGGTGGACGGTGGAGTAAGCAGACGATGGGGCCTCTTA
CCCCCTCCGGGAGTGAGGCGACAATGTATCTCTCGGTTGCCGTGTTTTTG
CATGAGCACGCCTTCGACAGCATTCAAAAGTTCCGAGAGACAATCACAGT
GCGGAAGGATGGAGTCTTCCGGATGTCGCTACCGAAATTCAACCACTGGG
TTCTTCTTTTGCCCCCGGCAAACGCGGACAGCCTTCAGGTGAAACAGTTT
GGCCGCAATGCACGCCGGTACTGCTGTCCATGCATAAATCGTGTGAGCGG
TAGGCTAACCTAAGAGATCTCAGTGCCGCGTCATTTTAGCACAAAACTCC
GTTTGGTTATCAACAATGCGTGTGGTCCGTGCGATGATGGGTGTGTTGTT
TGCTGTACCGAAGGTTGTAGACGAACGAGCTGCGGCAGTCTCGGCGGGCA
AGGCGAGAAATGTCATGGAAAAAGAAACTGCAGCAAGAGCAGCTGGGGAT
TCGGCCACGCAAGAGGCGGATAAAAAGGCGCGACAGGAGCAGAAGAAGGC
AGCAGACGCGGCCGCTGCGGTGAGCGTGAGAAAGGCATCATGTTCTTGCG
CGGGATAAGCTTCATCGATTGGCGAATCCTCGTTGGTGGAATGGTATCTC
GGCGTCCAGTCTCGCTCCTTGACATGGATTTCGCAATGGTGTGCGGGTGC
GGTATCCTGGCGGCGAGAAAGGTCGACGCGCCTTGCAGGTCGGCGGTGGT
GAGTGGCCTATATCCCACGATCATATTACGTTGCCGATATCGACGGCATT
GACGCGAGCAGATGTTTGTACATGCTTTTTGTGAAGCGCGAACGGTACTT
GCCCGTGTGTCGCGTCGTGTGTGTTACACGCGTCTCCTTCGTTGTTTTCG
GTGTCTCTTGCCCAGGGAACATCAGAGTCGAGTGCGATGGGCGGAATACA
ACTTGGCTTACCGGACACTTCAGAGTCGGCGCATGAGGCGACAACGACGT
GCTCAACGATGGCAAGCAAACGTCATGCCTGAACAATGGCGTCGCTGGGA
GCGGGGGTGGGGTGTGGGTATCCACGAGTTTGATGAGGTTGTGGCTTCTG
ATTTTGTTGCCGGGTGAATGCACCAAGCCGAGGGCAAAACACGCCTCCTA
CTTTATGTTTATGATGTGATATGACAAATTAGTTCATATTTTGCACTTTG
TTGGTGAACTTGAATCCGTTACCATTACCCCGTGTGTGTTGAAGATGCCG
TGTGTTACGGACGGTACTTTGACGGGTATATCTCCTATGTCCCTCCGCCC
GCGCCGATACCAGCGTGGCAATGTCCGCGCGATATCTTCCGTGTCAGTGA
CTGGAATGTATTCTGGGGAAGTCCAGCTATGGGATGAGGGCACCCAACAA
GCAAGGAGTTCTGTGTTGGTTAAATAGCAGTGGTGACGGGCCTGTGAGCG
AGGGTTGTGGATGCTCAAGTGTGCATTTCCCGACATGCACCTTTTGTGCA
AGGCGTGCTTCGATGAAGGCCGTGAGCACCGTTATGACGATGTTCATCAT
CCCTGGGTGGAAATGTTGAGCGATTCCGCGACAGTACATCATCCCGGGGT
ATATATACGATGCTTTTAGGTTGGGGATGATGAAGGATGAAGCGATGAGC
CAATCTCTAGGGGGGGGTGATCAAGTTGTAAAGGGGAAGTGAACACAAGG
GGGGTGCTAACAAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig156:264261..267424+

>mRNA_P-littoralis_Contig156.83.1 ID=mRNA_P-littoralis_Contig156.83.1|Name=mRNA_P-littoralis_Contig156.83.1|organism=Pylaiella littoralis U1_48|type=CDS|length=708bp|location=Sequence derived from alignment at P-littoralis_Contig156:264261..267424+ (Pylaiella littoralis U1_48)
ATGCACGAGTTCATCAGCGGACCGAAGTACAAGGACTTCTTCTGCACTAT
GGAGACGTATGACATGGAAGTCTTGGATGGTGCCGCGGCCGTGGGGATCG
ATTGTTTCAGTAGCATGACGGAAGATCAAGCGCGCGTCTATTACCTCCTT
ACCCTTCGGGCTATCGCTGGCGAATTCAACGACTGCCAGCAAGCTTGCAT
GCCATGGGCGGCGCAAGCATTCGGCGTGAAACTGCCTTGCTTCCACCCAG
GCAATTCCGTAGGGGGCATCAAGGGTGGAACGGTATGCGGTGGACGGTGG
AGTAAGCAGACGATGGGGCCTCTTACCCCCTCCGGGAGTGAGGCGACAAT
GTATCTCTCGGTTGCCGTGTTTTTGCATGAGCACGCCTTCGACAGCATTC
AAAAGTTCCGAGAGACAATCACAGTGCGGAAGGATGGAGTCTTCCGGATG
TCGCTACCGAAATTCAACCACTGGGTTCTTCTTTTGCCCCCGGCAAACGC
GGACAGCCTTCAGGTTGTAGACGAACGAGCTGCGGCAGTCTCGGCGGGCA
AGGCGAGAAATGTCATGGAAAAAGAAACTGCAGCAAGAGCAGCTGGGGAT
TCGGCCACGCAAGAGGCGGATAAAAAGGCGCGACAGGAGCAGAAGAAGGC
AGCAGACGCGGCCGCTGCGGTGAGCGTGAGAAAGGCATCATGTTCTTGCG
CGGGATAA
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