mRNA_P-littoralis_Contig156.75.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.75.1
Unique NamemRNA_P-littoralis_Contig156.75.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:250261..252451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1220
Hectar predicted targeting categoryother localisation
Exons6
Cds size876
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.75.1prot_P-littoralis_Contig156.75.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 250261..251602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789745.4813683-CDS-P-littoralis_Contig156:250260..2503921680789745.4813683-CDS-P-littoralis_Contig156:250260..250392Pylaiella littoralis U1_48CDSP-littoralis_Contig156 250261..250392 -
1680789745.491947-CDS-P-littoralis_Contig156:250510..2510471680789745.491947-CDS-P-littoralis_Contig156:250510..251047Pylaiella littoralis U1_48CDSP-littoralis_Contig156 250511..251047 -
1680789745.5072196-CDS-P-littoralis_Contig156:251236..2514141680789745.5072196-CDS-P-littoralis_Contig156:251236..251414Pylaiella littoralis U1_48CDSP-littoralis_Contig156 251237..251414 -
1680789745.518864-CDS-P-littoralis_Contig156:251573..2516021680789745.518864-CDS-P-littoralis_Contig156:251573..251602Pylaiella littoralis U1_48CDSP-littoralis_Contig156 251574..251602 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789745.5311646-UTR-P-littoralis_Contig156:251602..2516151680789745.5311646-UTR-P-littoralis_Contig156:251602..251615Pylaiella littoralis U1_48UTRP-littoralis_Contig156 251603..251615 -
1680789745.5426695-UTR-P-littoralis_Contig156:251829..2520451680789745.5426695-UTR-P-littoralis_Contig156:251829..252045Pylaiella littoralis U1_48UTRP-littoralis_Contig156 251830..252045 -
1680789745.5510495-UTR-P-littoralis_Contig156:252338..2524511680789745.5510495-UTR-P-littoralis_Contig156:252338..252451Pylaiella littoralis U1_48UTRP-littoralis_Contig156 252339..252451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.75.1

>prot_P-littoralis_Contig156.75.1 ID=prot_P-littoralis_Contig156.75.1|Name=mRNA_P-littoralis_Contig156.75.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=292bp
MGTTGKWSASEGPKSTLPDAPPTEPITSTEESKKETRKRKHREVVARGRV
ERKRKRESEARAQKSAAIKAEHAKAREETLERLKNIATSQLTEDHLKLFG
EMFDDGDLLEGESDFPRERGGKGLKNGWFFARLRWENASAAGKSRRVREP
TCFWTDGKDRLDRLTRVFKACVAAGIPLMVKKDAPEKSVMGICAREAVGQ
GYVGLGSKGRVSTTDSFPVDDEVVDDWIGRCVDRNYLNGHTWLLQTHTIT
ERIENSKKLRTIKSAKAIRSVKNAGMARMCFPQSGVGVTIDS
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mRNA from alignment at P-littoralis_Contig156:250261..252451-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.75.1 ID=mRNA_P-littoralis_Contig156.75.1|Name=mRNA_P-littoralis_Contig156.75.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2191bp|location=Sequence derived from alignment at P-littoralis_Contig156:250261..252451- (Pylaiella littoralis U1_48)
CTTCGCGTGCCCCCCCCCCTTCAAACACTTTGTCTGCGTGGACTCTTGTT
GCCGCTAGCAAACACCAGGGCCCGGAAGCGGAAACAAAGGACAAGAGCGA
AAGGGATAAGCAGGTGATTGTATGTCATCTGAACCCGCGGTGCTGTTTCT
TGTCCCACTCTGTATTTTCGAGACGACAACCATGTGCCATCGGGCAGCGT
CCACATGCGCGCGCAGCAGCCTGAAGCTACATGACCGCTCCCAGGGCGTC
ACATAACTCTGGTGGTGGCCAAACCGCTCCTGTTTGATTGCGCGTTCGCT
GAGCAAAGTAAACTTTGTACCAGACAAGCAAAAAAGCAACGGAGAGGATT
AAAGCATTAACTTCGGGACGTCTGTCCGTGCTCTTGTGTCTGTGAATGTG
TTACAGGTGTGCATCGGGGTGTGTTCGGTCTCGGGAAGAGACTCTGTGAA
AACAGCCCACCCCCTCGCAAGACTTGCGCCCAAAGGAGGGCTAGGAGCAT
TGCCGCCACTACCTCAGAGCCAACTCTCCGACGAGGAACGAAAGACGATC
AATCGTCGCGGAGCCGTATTGAAGAGTCGAGCAAAAAACGCAAAACAAAA
GGGAGAACGTTCCGTGATGGAGGTATGAATGTGTGTCATGAACACCAACA
CCCATCCTACTACACGCTGTCTGTTCGCAAGTCGCTCATTGACGCTTGGG
GCTTGTTCGTCGATGGTGTGAAATAAAGCTTTGTTTTAGCTGCTACTGCT
GGGATTCTCCAACAATAAGAGGCTGTTGGCCAGATCTCTAATCTAAAACT
TGGTTCCTTTCCCTTCCCAAACCCGCTCGGGATCAGGGCAGCAGTTCGTA
TGGGGACAACTGGCAAGTGGAGCGCGAGGTAATGTGTGCATTCGTGTTCA
TTGTAGATACTCGTCGACTGCTGTTTCGGCGACATATATGACATGTATGT
AAAGCATATAAAACATTGAGCTTGCGCCCACAGGAAGAGCAGCAGAAGGA
CTAACAATTTTTCTCTTTGTACGGTAATTTTTGCCAGTGAGGGACCGAAG
AGTACTCTCCCGGATGCACCGCCGACCGAGCCTATCACGTCCACCGAGGA
AAGCAAGAAGGAAACGAGAAAGAGGAAGCATCGCGAAGTTGTAGCCAGGG
GTCGAGTGGAACGAAAACGGAAAAGGGAGTCCGAAGCGCGGGCTCAAAAA
AGTGCTGCGATAAAGGTGCCTATGTCATGATCTCGACGAAGCTGTGTTTG
TGGCCGTATCACCATGCAACCATTTTTTGGGAGCACCTCGTCGATCGATA
CTCCAAATAGTGGGAAACGCGTTTTGGATGTGCACGTGCTCCTAGACCTC
TGTAAGGACGTGTGTGGCATATTTTGCGCGTTTTTATCCGTCAACCCTTC
CCAGGCGGAACACGCGAAGGCACGCGAAGAGACCCTGGAGCGCTTGAAGA
ATATCGCCACATCACAGCTCACAGAGGACCACCTGAAACTGTTCGGCGAA
ATGTTCGACGACGGCGACTTGTTGGAGGGCGAATCCGATTTTCCGCGCGA
AAGAGGAGGCAAAGGGCTGAAGAATGGCTGGTTCTTCGCCAGACTGAGAT
GGGAGAACGCCTCAGCAGCAGGGAAATCTCGCCGTGTTCGTGAACCGACG
TGTTTCTGGACGGATGGGAAGGACAGACTGGACCGCTTGACGAGGGTCTT
CAAGGCGTGCGTGGCTGCGGGAATACCGCTCATGGTAAAGAAGGACGCAC
CTGAAAAGTCCGTGATGGGAATTTGTGCCCGAGAGGCGGTGGGGCAGGGG
TACGTGGGCCTCGGGAGCAAAGGCCGTGTGTCGACAACGGACTCGTTTCC
CGTGGACGACGAAGTTGTCGACGACTGGATAGGTCGCTGCGTGGACAGGA
ATTATCTCAATGGCCACACCTGGCTACTTCAGACCCACACGGTGAGACTC
CCGAGTATAAATCGTTCGCCAAAATTCAGAAGCAGTTCCGGATTTTTCCC
CGTTGCAGTTATTAACAACACGATTTCCCCTGGTGAATCTCTTTGTGAAA
ACTGTACAGATTACCGAGAGGATCGAGAACAGTAAAAAACTTCGGACCAT
CAAATCAGCAAAGGCCATCAGATCGGTGAAGAACGCGGGAATGGCGCGCA
TGTGCTTCCCACAGTCTGGAGTGGGGGTGACCATCGACAGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig156:250261..252451-

>mRNA_P-littoralis_Contig156.75.1 ID=mRNA_P-littoralis_Contig156.75.1|Name=mRNA_P-littoralis_Contig156.75.1|organism=Pylaiella littoralis U1_48|type=CDS|length=876bp|location=Sequence derived from alignment at P-littoralis_Contig156:250261..252451- (Pylaiella littoralis U1_48)
ATGGGGACAACTGGCAAGTGGAGCGCGAGTGAGGGACCGAAGAGTACTCT
CCCGGATGCACCGCCGACCGAGCCTATCACGTCCACCGAGGAAAGCAAGA
AGGAAACGAGAAAGAGGAAGCATCGCGAAGTTGTAGCCAGGGGTCGAGTG
GAACGAAAACGGAAAAGGGAGTCCGAAGCGCGGGCTCAAAAAAGTGCTGC
GATAAAGGCGGAACACGCGAAGGCACGCGAAGAGACCCTGGAGCGCTTGA
AGAATATCGCCACATCACAGCTCACAGAGGACCACCTGAAACTGTTCGGC
GAAATGTTCGACGACGGCGACTTGTTGGAGGGCGAATCCGATTTTCCGCG
CGAAAGAGGAGGCAAAGGGCTGAAGAATGGCTGGTTCTTCGCCAGACTGA
GATGGGAGAACGCCTCAGCAGCAGGGAAATCTCGCCGTGTTCGTGAACCG
ACGTGTTTCTGGACGGATGGGAAGGACAGACTGGACCGCTTGACGAGGGT
CTTCAAGGCGTGCGTGGCTGCGGGAATACCGCTCATGGTAAAGAAGGACG
CACCTGAAAAGTCCGTGATGGGAATTTGTGCCCGAGAGGCGGTGGGGCAG
GGGTACGTGGGCCTCGGGAGCAAAGGCCGTGTGTCGACAACGGACTCGTT
TCCCGTGGACGACGAAGTTGTCGACGACTGGATAGGTCGCTGCGTGGACA
GGAATTATCTCAATGGCCACACCTGGCTACTTCAGACCCACACGATTACC
GAGAGGATCGAGAACAGTAAAAAACTTCGGACCATCAAATCAGCAAAGGC
CATCAGATCGGTGAAGAACGCGGGAATGGCGCGCATGTGCTTCCCACAGT
CTGGAGTGGGGGTGACCATCGACAGC
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