mRNA_P-littoralis_Contig156.74.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.74.1
Unique NamemRNA_P-littoralis_Contig156.74.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:249889..250251 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size365
Hectar predicted targeting categoryother localisation
Exons1
Cds size348
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789745.437554-CDS-P-littoralis_Contig156:249888..2502361680789745.437554-CDS-P-littoralis_Contig156:249888..250236Pylaiella littoralis U1_48CDSP-littoralis_Contig156 249889..250236 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789745.4494083-UTR-P-littoralis_Contig156:250236..2502511680789745.4494083-UTR-P-littoralis_Contig156:250236..250251Pylaiella littoralis U1_48UTRP-littoralis_Contig156 250237..250251 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.74.1prot_P-littoralis_Contig156.74.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 249889..250236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.74.1

>prot_P-littoralis_Contig156.74.1 ID=prot_P-littoralis_Contig156.74.1|Name=mRNA_P-littoralis_Contig156.74.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
MSWAMSPDVTTKLHFDMQETGDSLFFSSAVGTIRAVRADDAGLPFAKRAI
VMCAQDREMVRTKFGLNVRESGHCQYSGPMNLESLAASLRKFRAHQLLLY
NSTRQHCTEETPIFLC
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mRNA from alignment at P-littoralis_Contig156:249889..250251-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.74.1 ID=mRNA_P-littoralis_Contig156.74.1|Name=mRNA_P-littoralis_Contig156.74.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=363bp|location=Sequence derived from alignment at P-littoralis_Contig156:249889..250251- (Pylaiella littoralis U1_48)
GCGGGTAGCGGGGTCATGAGCTGGGCCATGTCTCCCGACGTGACGACGAA
ACTCCACTTCGATATGCAAGAGACGGGCGACAGCTTGTTCTTTTCGTCTG
CAGTAGGGACGATACGGGCAGTGAGAGCAGATGATGCGGGACTCCCCTTC
GCGAAACGAGCCATCGTGATGTGTGCGCAAGACAGGGAGATGGTTAGGAC
GAAGTTTGGACTGAATGTACGTGAGAGTGGACATTGCCAGTACTCGGGTC
CCATGAACCTCGAGAGTCTTGCTGCGAGTCTGCGAAAGTTTCGCGCCCAC
CAACTACTGCTGTATAATTCGACAAGACAACACTGTACCGAGGAGACTCC
AATTTTTTTATGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig156:249889..250251-

>mRNA_P-littoralis_Contig156.74.1 ID=mRNA_P-littoralis_Contig156.74.1|Name=mRNA_P-littoralis_Contig156.74.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig156:249889..250251- (Pylaiella littoralis U1_48)
ATGAGCTGGGCCATGTCTCCCGACGTGACGACGAAACTCCACTTCGATAT
GCAAGAGACGGGCGACAGCTTGTTCTTTTCGTCTGCAGTAGGGACGATAC
GGGCAGTGAGAGCAGATGATGCGGGACTCCCCTTCGCGAAACGAGCCATC
GTGATGTGTGCGCAAGACAGGGAGATGGTTAGGACGAAGTTTGGACTGAA
TGTACGTGAGAGTGGACATTGCCAGTACTCGGGTCCCATGAACCTCGAGA
GTCTTGCTGCGAGTCTGCGAAAGTTTCGCGCCCACCAACTACTGCTGTAT
AATTCGACAAGACAACACTGTACCGAGGAGACTCCAATTTTTTTATGC
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