mRNA_P-littoralis_Contig156.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.1.1
Unique NamemRNA_P-littoralis_Contig156.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig156.1.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 447 bits (1150), Expect = 1.160e-143
Identity = 226/441 (51.25%), Postives = 291/441 (65.99%), Query Frame = 3
Query:  843 RTVAVWQVVLRDYSDDDDAGTDEDNDPPMKRTRRVLPRPDYRASFWWRMLGET------GLKEPGSREARLFRRRFRIPYQFFTELIELVKEKKWFSIRQTDVAGRQCIPVELKVLASLHILGRGNFFEDMTQMSHISEPTIQSTFHKFNKLFAQEFYHDHVHLPTAGEDQDQVMRHYDLPGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDPVYKEKEYTLFDKHGEPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIRWSKALESVRKDVECFFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHNMLHAFDGLDEFEPTVEWGGKEGLHDPWDNPPLLDESTTGSTSTSVDDDNANTKPVQEHF-ILKKALVAHFEVRRQQRSIRWL 2144
            RT+  W +VL D  + D    +E+ D    + RRV PR DY  S W   L E       G+ +P SR AR FR  FR+PY FF EL+ LVK++ WF   + D +GR+ IPV+LKVLA L IL RGN F D+  MS IS  T  +TFH+F + FA+E Y +H+ LPT G+ Q +VM  YD  GF+GA GSTDVTHI W  CPY+ A+ YTGKEG+ T+A+Q  VDHT R+LA T GF GS NDK+II YD A+TKIREDP+Y EKE+T+++  G P+Q KG Y +VDNGY+KW  LIPPSK+     ++ +SK LESVRKDVECFFGI+KGRFRILKL I +   EDI+N+FFTCC LHNMLH++D   E E    W G  GLH+ W++ P LD S+ G+  +S   ++     V+  F   +K L+A F  R+ +  I WL
Sbjct:   45 RTLVAWDLVLDDLDELDPDSEEEEEDNREIKRRRVYPRKDYNISGWAIQLQELKDLEVDGIVDPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGRRGIPVQLKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPT-GDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVE---VESGFNTRRKQLIASFVYRKSKNDIAWL 481          
BLAST of mRNA_P-littoralis_Contig156.1.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 437 bits (1125), Expect = 9.590e-140
Identity = 229/442 (51.81%), Postives = 290/442 (65.61%), Query Frame = 3
Query:  834 RVARTVAVWQVVLRDYSDDDDAGTDEDNDPPMKRTRRVLPRPDYRASFWWRML---GETGLKEPGSREARLFRRRFRIPYQFFTELIELVKEKKWFSIRQTDVAGRQCIPVELKVLASLHILGRGNFFEDMTQMSHISEPTIQSTFHKFNKLFAQEFYHDHVHLPTAGEDQDQVMRHYDLPGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDPVYKEKEYTLFDKHGEPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIRWSKALESVRKDVECFFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHNMLHAFDGLDEFEPTVEWGGKEGLHDPWDNPPLLDESTTGSTSTSVDDDNANTKPVQEHF-ILKKALVAHFEVRRQQ-RSIRWL 2144
            ++ R+VAVW V++ D+ DD +  T++D      + RRV  R DY  S WW+ L    ETG  +  +REAR FR  FR+PY FF  L+ELV+++ WF   ++DV GRQ +PVELKVLA L IL RGN F D+  MS IS  T+ STFH+F K FA E Y ++V+LPT GED  +VM  YD  GF GA+GSTDVTHI W  CPY+ A+ YTGKEG  T+AFQ  VDH+GR+LA T+GF G+ NDKTII YD A+T+IR DPVY E++Y L+ + G+ F+ KG Y +VDNGY+KW  LIPPSK      ++ +SK LES RKDVEC+FGILKGRFRI KL I F   E I+N+FFTCC LHNMLH+FD   +      W G  GLH+  D  P  D S+ GS      D       V+  F  L+  LV +F  RR++ R I WL
Sbjct:   61 QLQRSVAVWDVIMEDFEDDLELDTEDDEASREVKRRRVYVRKDYTKSGWWQELMELRETGETDHTTREARRFRNNFRVPYPFFVHLVELVRDRDWFPTGESDVTGRQAVPVELKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPT-GEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNAADRDPNTDYSSVGSM-----DGQHEAVEVETGFGALRSKLVTNFVYRREKKRDIVWL 496          
BLAST of mRNA_P-littoralis_Contig156.1.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 365 bits (936), Expect = 1.570e-112
Identity = 195/406 (48.03%), Postives = 255/406 (62.81%), Query Frame = 3
Query:  960 DYRASFWWRMLGETGLKEPGSREARLFRRRFRIPYQFFTELIELVKEKKWFSIRQTDVAGRQCIPVELKVLASLHILGRGNFFEDMTQMSHISEPTIQSTFHKFNKLFAQEFYHDHVHLPTAGEDQ-DQVMRHYDLPGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDPVYKEKEYTLFDKHGEPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIRWSKALESVRKDVECFFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHNMLHAFDGLDEFEPTVEWGGKEGLHDPWDNPPLLDESTTGST--STSVDDDNANTKPVQE--HFILKKALVAHFEVRRQ-QRSIRWLKHTAP 2159
            D     W ++L +  LK+P S  A+ FR  FR+PY FF  L+ELVK+K WF+  Q D  GR+C PVE KVLA L ILGRGN F  +  +S +S PT+Q  FH+F + FA E Y +H+ LP+    + D+VM  Y+  GF GA+GSTDVTHI W+ CPY+  + YTGKEG  T+ +Q  V+H GR+LA T+GF GS NDKTII  D A+ +IR D  Y EK +T+  K G     KG Y IVDNGY+KW +LI PSK+  ++ ++ +SK LESVRKDVECFFGILK RFRILKL + +Q  E ++ +FFTCC LHNMLH  DG+   E  V W G   L           ++T+G    S+SV   + N KP  E  H  LK+ L  +F  R++ ++ I WL    P
Sbjct:   59 DTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEEDVNWVGSAEL-----------QNTSGHNLDSSSVGTKDLNDKPQVEAAHAELKRKLTTNFLYRKKHKKDIVWLSRKRP 453          
BLAST of mRNA_P-littoralis_Contig156.1.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 343 bits (880), Expect = 4.790e-105
Identity = 182/345 (52.75%), Postives = 226/345 (65.51%), Query Frame = 3
Query: 1119 RQTDVAGRQCIPV-ELKVLASLHILGRGNFFEDMTQMSHISEPTIQSTFHKFNKLFAQEFYHDHVHLPTAGEDQDQVMRHYDLPGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDPVYKEKEYTLFDKHGEPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIRWSKALESVRKDVECFFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHNMLHAFDGLDEFEPTVEWGGKEGLHDPWDNPPLLDESTTGSTSTSVDDDNANTKPVQEHF-ILKKALVAHFEVRRQQ-RSIRWL 2144
            + TD++ R C P    +VLA L IL RGN F D+  MS IS  T+ STFH+F K FA E Y ++V+LPT GED  +VM  YD  GF GA+GSTDVTHI W  CPY+ A+ YTGKEG  T+AFQ  VDH+GR+LA T+GF G+ NDKTII YD A+T+IR DPVY E++Y L+ + G+ F+ KG Y +VDNGY+KW  LIPPSK      ++ +SK LES RKDVEC+FGILKGRFRI KL I F   E I+N+FFTCC LHNMLH+FD   +      W G  GLH+  D  P  D S+ GS      D       V+  F  L+  LV +F  RR++ R I WL
Sbjct:   67 KATDLSARCCFPPPHTQVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPT-GEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEEPNWAGSAGLHNAADRDPNTDYSSVGSM-----DGQHEAVEVETGFGALRSKLVTNFVYRREKKRDIVWL 405          
BLAST of mRNA_P-littoralis_Contig156.1.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 343 bits (879), Expect = 1.860e-104
Identity = 191/416 (45.91%), Postives = 246/416 (59.13%), Query Frame = 3
Query:  987 MLGETGLKEPGSREARLFRRRFRIPYQFFTELIELVKEKKWFSIRQTDVAGRQCIPVELKVLASLHILGRGNFFEDMTQMSHISEPTIQSTFHKFNKLFAQEFYHDHVHLPTAGEDQ-DQVMRHYDLPGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDPVYK----------------------------EKEYTLFDKHGEPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIRWSKALESVRKDVECFFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHNMLHAFDGLDEFEPTVEWGGKEGLHDPWDNPPLLDESTTGSTSTSVDDDNANTKPVQEHFILKKALVAHFEVRRQ-QRSIRWL 2144
            +L +  L++  S  A+  R  FR+PY  F  L+ LVK K WFS   TD  G    PVE KVLA L ILGRGN F  + QMS +S  T+Q  FHKF + FA+E Y + +HLPT    + D VM+ YD  GFTGA+GS DVTHI W+ CPY+ A+ YTGKEGF TIA+Q  VDH GR +A T+GF GS NDKTI+ +D A+ KI  D  Y                             EK + ++++ G     KG Y +VDNGY+KW+ILI PSK+  ++ ++ +SK LESVRKDVECFFGILKGRFRILKL + +QS E I+N+FFTC  LHNMLH FDG+D+      W    G+       P   E+  GS  T   D N   +   EH + K+ L   F  R++ ++ I WL
Sbjct:   26 LLEDKDLEDSTSITAKQLRVDFRVPYTVFLRLVALVKSKNWFSTAVTDAVGWASHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQLVENTNWVSSAGVGATLTTEP---EADCGSVGTK--DVNDQPQLEIEHTVRKRQLTTSFAYRKKHKKDIVWL 436          
BLAST of mRNA_P-littoralis_Contig156.1.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 340 bits (872), Expect = 4.170e-104
Identity = 171/361 (47.37%), Postives = 230/361 (63.71%), Query Frame = 3
Query:  954 RPDYRASFWWRMLGETGLKEPGSREARLFRRRFRIPYQFFTELIELVKEKKWFSIRQTDVAGRQCIPVELKVLASLHILGRGNFFEDMTQMSHISEPTIQSTFHKFNKLFAQEFYHDHVHLPTAGEDQ-DQVMRHYDLPGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDPVYKEKEYTLFDKHGEPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIRWSKALESVRKDVECFFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHNMLHAFDGLDEFEPTVEWGGKEGLHDPWDNPPLLDESTTGSTSTS 2033
            R +     W +ML +  L++  S  ++ FR  FR+P  FF  L+ LVK K WF+    D A RQ  PVE KVLA L ILGRGN F  + Q+S +S  T+Q+ FHKF K FA+E Y +H++LP+    + D VM+ YD  GF+GA+GS DVTHI W+ CPY+ A+ YTGKEG  T+ +Q  V+H GR +A T+GF  S NDKT + +DA + KIR D  Y EK + ++++ G     KG Y +VDNGY+KW+IL+ P+K+  ++ +I +SK LESVRKDVECFFGILKG FRI K+ + +   E I+N+FFTCC LHNMLH FDG+D+      W    G           D ST G+  T+
Sbjct:   28 RKEVEKCAWAQMLEDKDLEDSNSISSKQFRLDFRVPDSFFLRLVALVKSKDWFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQLVENTLWVSSAGAGTGVATEQEADSSTVGAKDTN 388          
BLAST of mRNA_P-littoralis_Contig156.1.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE)

HSP 1 Score: 330 bits (846), Expect = 1.370e-99
Identity = 177/388 (45.62%), Postives = 237/388 (61.08%), Query Frame = 3
Query:  906 DEDNDPPMKRTRRVLPRPDYRASFWWRMLGET--GLKEPGSREARLFRRRFRIPYQFFTELIELVKEKKW--FSIRQTDVAGR---QCIPVELKVLASLHILGRGNFFEDMTQMSHISEPTIQSTFHKFNKLFAQEFYHDHVHLPTAGEDQDQVMRHYDLPGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDPVYKEKEYTLFDKHGEPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIRWSKALESVRKDVECFFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHNMLHAFDGLDEFEPTVEWGGKEGLHDPWDNPPLLDESTTGSTSTSVDDDN 2048
            D   +P  KR R V PRPDY  S W  ML E    L +P +++ARLFRRRFR+PY  F EL++ +K   W  F+   TD+ GR    CIPVELKVL      GRGNFF+D+ Q+S ISE TIQ  FH+F + FA EF+  HV  P  G   ++++R Y   GF G  GS D THI + + P S    Y GKEGFAT+AF+ + DH  R L  +K F G+MNDKTI+ +D  + +I+ +   K+  +TL  + G  F+ +G Y IVD GY+K      P +F  T  E+ + K LESVRKD+ECFFGILKGRFRILK+ +L++ +  ++ +F TCC LHNMLH++DGL   E   EW G +G  DPW   P  + +   S    + +D+
Sbjct:   45 DATEEPSAKRKRTVYPRPDYHNSAWAIMLREKEDALADPTTKDARLFRRRFRMPYPIFLELVKEIKSAGWKGFTTDATDLGGRGTRPCIPVELKVL------GRGNFFDDIPQLSFISEQTIQRVFHEFTQRFALEFFPKHVKFPQ-GAHLEEILREYKDVGFGGCAGSMDCTHIHYQSAPNSGRHSYVGKEGFATVAFEVVCDHKLRCLGVSKAFPGAMNDKTIVMFDEYVRRIKTE--CKDVPFTLLGEDGSEFEERGLYLIVDGGYHKC-----PVQFPVTQDELAFRKQLESVRKDIECFFGILKGRFRILKMPLLYRGIHKLDCIFQTCCALHNMLHSYDGLSLLEKDCEWAGADGDLDPWVTTPEAESAADNSPDLHLFEDD 418          
BLAST of mRNA_P-littoralis_Contig156.1.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 325 bits (834), Expect = 6.940e-99
Identity = 173/360 (48.06%), Postives = 229/360 (63.61%), Query Frame = 3
Query:  834 RVARTVAVWQVVLRDYSDDDDAGTDEDNDPPMKRTRRVLPRPDYRASFWWRMLGETGLKEPGSREARLFRRRFRIPYQFFTELIELVKEKKWFSIRQTDVAGRQCIPVELKVLASLHILGRGNFFEDMTQMSHISEPTIQSTFHKFNKLFAQEFYHDHVHLPTAGEDQDQVMRHYDLPGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDPVYKEKEYTLFDKHGEPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIRWSKALESVRKDVECFFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHNMLHA 1913
            R AR+V+ W  VL D   +D+   +E   P +KRTRRV  R D+R S WW  L +  L +  +  A++FR RFR+PY FF EL++L + K+WFS  + D A R+ IP+ELKVL      G+GN F+D+ Q+S +SE   Q+ FHKF +  A E + +H++LPT G   D+VM  +   G TGA GSTDVTHI    CP++  + +TGKEGF TIA++  VDH GR LA T GF G  NDKT I YD+ + KIR +  Y E+EY L   +G    R+G + IVDNGY +            ++ +  +S+ LESVRKDVECFFGILKGRFRILKL + +   E I+N+FFTCC LHNMLH 
Sbjct:   31 RTARSVSYWDAVLFDEDSEDE---EEVVGPKVKRTRRVTQRRDWRTSAWWEKLQDVDLADHTTAAAKVFRERFRVPYPFFQELVKLSRAKRWFSPGEKDAANREGIPLELKVL------GKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPT-GTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYE------------SNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHT 368          
BLAST of mRNA_P-littoralis_Contig156.1.1 vs. uniprot
Match: A0A6H5K8I3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I3_9PHAE)

HSP 1 Score: 319 bits (817), Expect = 2.790e-95
Identity = 175/410 (42.68%), Postives = 245/410 (59.76%), Query Frame = 3
Query:  930 KRTRRVLPRPDYRASFWWRMLGETGL-KEPGSREARLFRRRFRIPYQFFTELIELVKEKKW--FSIRQTDVAGR---QCIPVELKVLASLHILGRGNFFEDMTQMSHISEPTIQSTFHKFNKLFAQEFYHDHVHLPTAGEDQDQVMRHYDLPGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDPVYKEKEYTLFDKHGEPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIRWSKALESVRKDVECFFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHNMLHAFDGLDEFEPTVEWGGKEGLHDPWDNPPLLDESTTGSTSTSVDDDNANTKPVQEHFILKKALVAHFEVRRQQRSIRW 2141
            KR R V PR DYR   W RML +  L ++P +REA+ FRRRFR+PY FF  L++ VK   W  F+  + ++ GR   +CIPVE KVLA L ILGRGN+F+D+++++ + E T+   FHKF + FA E +   V +P   E +D +M+ YD  G +GA+GS D THI+W  CPYS    + GKEG+AT+ F   V H  R+L+ T+GF G+ NDKTII +D     +R    YK+ EYTL  + G   + KG + IVD GY+ W+ L  P +      E  + + LESVRKD EC FG++KGRFRI K+  L++  E I+N+FFTC  LHNML A+DG++  EP  +W G +G  D     P++  S        V+ D+           L++ LV +F  R  Q ++ W
Sbjct:   50 KRRRTVRPRADYRTLPWARMLEKADLLQDPSTREAKQFRRRFRVPYPFFLSLVDEVKAGNWPGFTTDEFELGGRGTRRCIPVETKVLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFACEIFPVWVRMPNEDELKD-IMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSHIGKEGYATLVFNVAVSHDMRVLSCTRGFPGAQNDKTIIKFDKFAMAVRNG-WYKDVEYTLKGEDGADIKEKGPWLIVDGGYHNWKQLQSPIRAPSNKAESGFKRQLESVRKDSECCFGVVKGRFRICKMQFLYRKKERIDNIFFTCIILHNMLLAYDGIELLEPDCDWAGADGDLDKNIEHPVVRMSAPTHEDAVVECDDG-------FDALRQKLVTNFAYRWGQGTVGW 450          
BLAST of mRNA_P-littoralis_Contig156.1.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 313 bits (802), Expect = 1.720e-93
Identity = 161/369 (43.63%), Postives = 222/369 (60.16%), Query Frame = 3
Query:  888 DDDAGTDEDNDPPMKRTRRVLPRPDYRASFWWRMLGE------TGLKEPGSREARLFRRRFRIPYQFFTELIELVKEKKWFSIRQTDVAGRQCIPVELKVLASLHILGRGNFFEDMTQMSHISEPTIQSTFHKFNKLFAQEFYHDHVHLPTAGEDQDQVMRHYDLPGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIVDHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDPVYKEKEYTLFDKHGEPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIRWSKALESVRKDVECFFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHNMLHAFDGLDEFEPTVEWGGKEGLHD 1976
            D++    ED  P  + TR    RPDY +S W   L         G   P SREA+ FR  FR+P++FF   ++LV+    F     DVAGRQC+P+ELKVL  L +LGRGN F D+ Q+S +S  T + +FH+F   F+   +H  V LP  GE   +V   Y   G  GA+ S D THI W ACP+S    + GKEG+ T+ ++A  DH+GR+L++TKGF G+ NDKT++  D ++ ++RE+  +   ++ LFD  G   +  G + IVD GY++   LI P K   ++ +  WSK  ES+RKD+EC FG LKGRFR+ K GILF + E I+N +FT C +HNMLH FDGL   E  V+W GK+G  D
Sbjct:   19 DEEEXXXEDFGPCDRETRE---RPDYSSSAWGVRLANLESLRIAGRLVPSSREAKAFRSDFRVPHEFFRHFVDLVRTV--FPTATRDVAGRQCVPLELKVLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDCFSSGLWHQWVTLPE-GEVLKKVAGEYGDMGCPGAVASVDCTHISWPACPFSETNTHKGKEGYTTLVYEASCDHSGRILSSTKGFPGAENDKTVVKRDLSVLRMREEEPWASYKFVLFDLEGNTTEHTGGWLIVDGGYHRVPSLICPFKEYASEAQQEWSKRFESIRKDIECLFGRLKGRFRLFKTGILFGTREKIDNAWFTACIIHNMLHQFDGLANLEKDVDWAGKDGEAD 381          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAU4_9PHAE1.160e-14351.25Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE9.590e-14051.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE1.570e-11248.03Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY50_9PHAE4.790e-10552.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE1.860e-10445.91DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JHI0_9PHAE4.170e-10447.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHC3_9PHAE1.370e-9945.62DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KSI7_9PHAE6.940e-9948.06DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5K8I3_9PHAE2.790e-9542.68Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE1.720e-9343.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:3286..9126 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size3072
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue3.5e-87
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size1470
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.1.1prot_P-littoralis_Contig156.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 4145..8383 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789743.670613-UTR-P-littoralis_Contig156:3285..41441680789743.670613-UTR-P-littoralis_Contig156:3285..4144Pylaiella littoralis U1_48UTRP-littoralis_Contig156 3286..4144 -
1680789743.7520916-UTR-P-littoralis_Contig156:8383..91261680789743.7520916-UTR-P-littoralis_Contig156:8383..9126Pylaiella littoralis U1_48UTRP-littoralis_Contig156 8384..9126 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789743.7120097-CDS-P-littoralis_Contig156:4144..46601680789743.7120097-CDS-P-littoralis_Contig156:4144..4660Pylaiella littoralis U1_48CDSP-littoralis_Contig156 4145..4660 -
1680789743.722457-CDS-P-littoralis_Contig156:5348..57021680789743.722457-CDS-P-littoralis_Contig156:5348..5702Pylaiella littoralis U1_48CDSP-littoralis_Contig156 5349..5702 -
1680789743.7307854-CDS-P-littoralis_Contig156:6446..66231680789743.7307854-CDS-P-littoralis_Contig156:6446..6623Pylaiella littoralis U1_48CDSP-littoralis_Contig156 6447..6623 -
1680789743.7436826-CDS-P-littoralis_Contig156:7960..83831680789743.7436826-CDS-P-littoralis_Contig156:7960..8383Pylaiella littoralis U1_48CDSP-littoralis_Contig156 7961..8383 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.1.1

>prot_P-littoralis_Contig156.1.1 ID=prot_P-littoralis_Contig156.1.1|Name=mRNA_P-littoralis_Contig156.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=490bp
MEPAASEGDTERHAELVALLVAATRRRRERRVARTVAVWQVVLRDYSDDD
DAGTDEDNDPPMKRTRRVLPRPDYRASFWWRMLGETGLKEPGSREARLFR
RRFRIPYQFFTELIELVKEKKWFSIRQTDVAGRQCIPVELKVLASLHILG
RGNFFEDMTQMSHISEPTIQSTFHKFNKLFAQEFYHDHVHLPTAGEDQDQ
VMRHYDLPGFTGAIGSTDVTHIKWAACPYSWAKHYTGKEGFATIAFQAIV
DHTGRLLAATKGFGGSMNDKTIITYDAAITKIREDPVYKEKEYTLFDKHG
EPFQRKGNYSIVDNGYNKWEILIPPSKFAGTDIEIRWSKALESVRKDVEC
FFGILKGRFRILKLGILFQSLEDINNMFFTCCTLHNMLHAFDGLDEFEPT
VEWGGKEGLHDPWDNPPLLDESTTGSTSTSVDDDNANTKPVQEHFILKKA
LVAHFEVRRQQRSIRWLKHTAPGRRHASRNVEIANVETA*
back to top

mRNA from alignment at P-littoralis_Contig156:3286..9126-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.1.1 ID=mRNA_P-littoralis_Contig156.1.1|Name=mRNA_P-littoralis_Contig156.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5841bp|location=Sequence derived from alignment at P-littoralis_Contig156:3286..9126- (Pylaiella littoralis U1_48)
GGAGGGGTGGGCGTGGAAGAGGAGGAACAGGAGGGAACAAAACACAGGTT TGTCCGCGAAGAGAGTTGTTTGGTAAACTGCTTGCTGTGTGTACTTACTG GAGTTGTGTTGGTCGGGGACAAGAAGAGACTCCAGGAATCCCCGTTCGAA TTGGTGGGTAGCAATTACTTCCATGTCAAGGGTAGCAGGGCCACGATGTC TTTACGGAGAAGGAACATATTTAGTTGATGTTCAACAACTCCGCGTTTCG TTCTGTGAGGCATAATTATTATGCTGTCCCAGAATACAACAGCCAGCCCG CGCAGCAACGTCTTTTCTGGCGCCTTCTTGCCTGCTATACCATACACGAT GGACTCCAGATATCTGGTGAAAGAAAAAAAAAGTAAAAAACCCCACACCG TTCGAAGTTGCGCAGTAAGGCTGGATCTTATGGTCCACGATTTTGGGCCA AGGATTTTAAAGATCCTAGGAAAAGTCACCTTATGGACACGGATGTTGGC GATTTAGAATCTTTAAAATTCTTGGACGAACATCGTGGACCATTTTCCCA GGATGTTGGGCCAAACATCCGTGGCTCGGCATCCAAGAATTTTTCGCCAA GGATGTTTTCTAATGTCTGTTTAAACCCACAAAGCGGGGTCACGCCGCAT CCCCGAGCTGTATCGTGAGCGCACCACAGCGCACACAACAAGCTCGCGCA CACAAACAACAGAACCACACCACAACCCCACACCCGCCGCACGATGGAGC CTGCTGCGAGCGAAGGAGACACCGAACGACATGCGGAGCTCGTTGCTCTT CTGGTAGCAGCAACGCGGAGACGTCGCGAAAGGAGAGTTGCGCGCACTGT CGCTGTTTGGCAGGTGGTCCTGCGAGACTACTCTGACGATGATGATGCCG GAACGGACGAGGACAACGATCCACCCATGAAGCGTACGAGGCGGGTCCTC CCCCGACCAGACTACCGTGCTTCGTTTTGGTGGCGAATGCTTGGCGAGAC GGGCTTGAAGGAGCCAGGCTCGAGAGAGGCAAGATTATTTCGCAGGCGCT TCCGCATCCCGTACCAGTTCTTCACTGAGCTGATCGAACTAGTGAAGGAG AAGAAGTGGTTCTCCATCCGCCAGACGGACGTGGCGGGGCGCCAGTGCAT CCCAGTGGAGCTCAAGGTAACTCTCGCGTAACCGTATCTTCTCCCATGCT TGCGTTTGCCTGTTTGTGTGTACCTCCGAGCTTTGCTGACCGCTGACCAC CGACAGACTAGTAAAGCCCGCTATTTCCGCAGCAGCACTAGAACACGGAA GAAGCAGCAGAAAACAGCTTGGCAGGGCCTTGTGATAACGTACCGCTGTG CAGCTATCATGATGTAAAAAACCCACAGCAGTACAGGACGGTCACATGAC GTACTGCTTTCTGTACAAGCACGGCAGCAGTCATACTACAGCAGCCATCC CGCTGTGGCTAGACTTCGGTAGCTAAATGTGAAGAATCAACATATATGAA CAGCAGTAGTACAGACGTACCAGGTATGTATGACACGCTTTGTAGAGGCG CCCGTGCATCCCAGCGGAGCTGTGAAGGTAACTCTCGCGCATGTCTTCTC CCATTTTTGCGTGTTTGTTTATGTCTCCGAGCTTTGCCGACCTGAGGCAG ACTACCGTACTCTACAAGTAGCAAATATACAGCGTTGTAACTTGTACGTC CATTTGAGTGTTGTTTGTGTCTCCGAGCTTTGCGACCTGAGGCAGACCCT GTAGTACAGCAATATGCAGCGTAGTACTTGTCCAGCCCCAAAATTTCGGC GGCAAGCACCAGAAAACAGCACCAGCAGAAAACAGCTTGGCGGGGTCGTT GACGATGAACAGCAGTGTTGCTGTCATGAGATATCACATGACATCTACGG CAGCACCTATTTGAACAAGTGGAATACAGGTATAAACATGATACGGACGG CGTCTTACATTCATATATCGTTATGATTTTAAACATACGAAGTATATGCA CAGCAGTATGGTTTCGTACGAAGTTTATCGTACGATGAAGTCATACGGTA GACAGCGGCAGTGTCCAAAACCACTACTGCTTTGTGCTATAATTGATGGT GTATGAAGCATCAACTGCAGGCAGTGTGTGGCCTCTGTCCCAAAATCATT TTTCATGTGTTCGATCACGCGCCCTCCCGTGTTTGCTTTCGAGTCCGCCA GAGGCCTCTCGCAAAAATGTGTACTCCGAAGTATACGAGTATAGCTCCTG CGTTTACGTTCCGCCCCCTGCGAGGCGGCAACCCGTTCCATTCATCCTCG CGTCACAAGAAGTAGCAAGACTTTCCAGCAGACTCAATACACTGCACGGT GAAAGCGTGAAGCAATAGAGATCTGTACATGCCACCACGCTCCAGACCGA CAAATTTGCTTGTGATACCCCCCTTCTTTTTGTCCGGACAGAAAATGGCC CGCAATGAATGCCTCGTGACTGATTGTCAATTGTTGGGTTTTCCGATTGT CAGGTCCTGGCATCGCTGCACATACTTGGGAGGGGCAACTTCTTCGAGGA TATGACCCAGATGTCTCACATTAGCGAGCCGACGATACAAAGCACCTTTC ACAAGTTCAACAAGCTTTTCGCGCAAGAGTTCTACCACGACCACGTGCAT CTGCCCACCGCCGGCGAGGACCAAGACCAGGTGACTGGTCTCATCGTACA AGTATTGTGAACCCATGTTTTTGTCCCGACACACGTATCGTAGACCTTTT TATAATGCAAAGTATGTATCGTTTACAAACTTCCGTGCAATGTTGTGAAG TGGCGCATCTTGTCTTATTTTTTCTCGCCGTTAAAATAAGGTAAATCTAC CTACTTCAACCTCAGTGCCTCCTCATGATGGATTGCATTCTATCTCCGAC CGCCAAGGCATCGTTGTCCGTTTGCGTTTTGGTCGGACCATGCACGGGAA GTCGATACCGGATTAAGCTGGCAGGTTGCTCGTATCCGCGATGTGTCGCA TTTAGTCTGCCAAAAAGAACAACGATCAACACCTTCATTCGAGTCAACAT TATCCACTGCCTTAAGTTAAGCACGTGCATTGCGGTCTTGGTAGCGCATT GGTCTGAGTAAACAACAACGCACCAAACAAAAAGCGGAACGGCATCTATG TTCAGTTAAGTTAGGCACGTTGTAGCTCCCGGGTGTTGTGTGTGTTTTAA GTGCTGGATATGACATTGCTTCTCTATCGTGTACCAGGTATGTAGGTTGG TTTGTAGCCTCGACGCTCTCTCTTTGGACTCATGAACCCCAAGCCTTTGC ACGCCGTACTTCTTCCAGAACAGCGGTGGGCAGGCATAGTCAATCAACGG CGTGTTCTCGAAATTCGAAAACGCCCGACGTCATATCTCACGGTGCGACC CCACTGTTTCTTGCCAAATATCAGGTGATGAGGCATTACGACCTACCGGG ATTTACTGGAGCAATCGGTTCGACTGATGTGACCCACATCAAATGGGCGG CTTGCCCGTATTCTTGGGCGAAGCACTACACGGGAAAGGAAGGTTTCGCG ACCATCGCCTTCCAGGCGATCGTGGATCACACTGGGCGTCTCCTGGCCGC GACAAAGGGCTTTGGTGGCTCGATGAACGACAAGACCATCATCACGTACG ACGCGGCCATCACTAAAATCCGCGAAGACCCGGTCTACAAGGAGAAGGAG TACACTCTCTTCGACAAGCATGGTGAGCCGTTCCAGCGAAAGGGCAACTA CAGCATCGTCGACAATGGGTACAACAAGGTGAGATTGCTCTGCGGCTCGG TTTCTCGAGGTGTAGCCCGTGTGTTGGTGCCTCGTAGCTCTCCTATGGAT AGGCTTCAACGCTGTGCTTGTATGTCATGATGGAGAATTAAGACGAAACT AGCGTTTGTCCTGCTCGTACGTGGAGAGTCTGTATTCTCCTAGCAAGAAC CGTTGACGAAAAGCTAGTAACCGATCGCCCTTGTCTGGTCAATGTCTTTG TGGGTGGACTTGTTGCACCAAGGTTTCCAAAATGGTCAAAATGACGAGGC GCTCACGCCCCCCTCCGAATCTGAACGAACTCGAAGTAGTTTTACCCCGA ATGTGTCGGGCGACCAGACAATAACCAAATTTATACCACCGCACTGTCTG AATGGGGTGTTGGCGGGGCTCGATCTGTACGAATGCATCCGCCAAACAAC ATCGCACATGCTGTCCCGCGGGTTTGCTGTATGTCATGTTTTTTTATGGT GTATTTTCGAACAACTGCTGCCCGCTGTTGTCCGCTGTTGAGTGTCCACT GTGAAGCGCACTCGGACGTCCAAGGAGCGTGTGAAGTGTTCAGCGTCCCG CTGATTAGAACACGTTTTTCACACCGAAGCTCGAAGGTTGCCCCCTCCTC ATCCCACGTGCTGTCTGCCTTTCGTTTCCGTCCGTCTGTCACGCCTCGCC TCCCTTCCTACATAAGTGGGAGATCCTCATCCCCCCTAGCAAGTTCGCAG GTACCGATATCGAGATCAGGTGGAGCAAAGCGCTGGAGAGCGTTCGCAAG GACGTCGAGTGTTTTTTCGGCATCTTGAAGGGCCGTTTTAGAATTTTGAA ACTAGGAATTCTTTTCCAAAGCTTGGAAGACATCAACAACATGTTCTTTA CGTGTTGTACGTTGCACAACATGTTGCATGCGTTCGATGGGCTTGATGAA TTCGAGCCTACCGTGGAATGGGGGGGGAAGGAGGGTCTACACGATCCCTG GGACAACCCGCCTCTGTTGGATGAAAGCACCACAGGAAGCACTAGTACAT CGGTCGACGATGACAACGCCAACACGAAGCCAGTACAAGAGCATTTCATA TTGAAGAAAGCCCTCGTGGCACACTTTGAAGTCCGAAGACAACAGAGAAG CATTCGGTGGCTTAAACACACAGCGCCTGGTCGCCGACACGCGTCTCGCA ACGTTGAAATTGCCAACGTTGAGACTGCCTGATGGTACACTCGACGATGC TGACGGAATTTTTGAAATTGAAAACCACGTATCATAGTTCAGATGTATTT TGTATTTGTTCGCCGGCGGCATAACGCGCAGCCTGATCTTTGAACCACTT GCTTGAAACCGATATTTAACGCCTTTGTTTGTATTTGTTGGATGTATATG TTAATGTTTGATGCGCGAGTGGTGAAACATTTGCGATTGTACTACTTTTG TACATACGGCGTGTTGGTTTTGTTTCTCGCTACACACCATAGTAGCACAA GTCGAAAACCAACAAATGCGCGCCTTCCAGTTCCGTTCACACATATATTT TATGTTTCATTGTGCTGCATGCGCGGAAGCTCCGCGTCGGTGTGCGTTGT GCGTTGCCGGCGACCAGTTGTGCGCTGGTCGTTCTATCTTGTATCTTGTC TGGGCCCTTTACTTCGCGTGCGGTCCGGATGTTTTCACGATGTTGCTTGT CTTCAGCAACAAAATGTCGGGGTATTTGTTTTCACCTTCGAGTTCTTTTA TACAACGGTCCTCGTCTCTGCCCAGCGAAATGCAAGGAGTGTTTTGTTGT ATCTTTGGGTGGTTGAGTTTGAGCACGGTCGGAGGTATTTTCTTTTCGAT GTTGCTCGTCTCACAGCAGCGAAATGTCGGCGTGCTTTTGTTTTACCTTT GGGTCGTTTGATTTGAGCGCGGTCCGAAGTTGTGTTTTCTTTTATACGAC GGTGCTCGCCTCAGCAGCGAAATGCCGGTATTTTATTTTTTGCATATTTG GGTCCTTTAGTTTTAGCGCGGTCCGCAGTTTTCATTTTTTTTTCAACGAT GCTCGTCCCAGCCGCGAAATGCAGGGATGATTTGCTGCACC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig156:3286..9126-

>mRNA_P-littoralis_Contig156.1.1 ID=mRNA_P-littoralis_Contig156.1.1|Name=mRNA_P-littoralis_Contig156.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1470bp|location=Sequence derived from alignment at P-littoralis_Contig156:3286..9126- (Pylaiella littoralis U1_48)
ATGGAGCCTGCTGCGAGCGAAGGAGACACCGAACGACATGCGGAGCTCGT
TGCTCTTCTGGTAGCAGCAACGCGGAGACGTCGCGAAAGGAGAGTTGCGC
GCACTGTCGCTGTTTGGCAGGTGGTCCTGCGAGACTACTCTGACGATGAT
GATGCCGGAACGGACGAGGACAACGATCCACCCATGAAGCGTACGAGGCG
GGTCCTCCCCCGACCAGACTACCGTGCTTCGTTTTGGTGGCGAATGCTTG
GCGAGACGGGCTTGAAGGAGCCAGGCTCGAGAGAGGCAAGATTATTTCGC
AGGCGCTTCCGCATCCCGTACCAGTTCTTCACTGAGCTGATCGAACTAGT
GAAGGAGAAGAAGTGGTTCTCCATCCGCCAGACGGACGTGGCGGGGCGCC
AGTGCATCCCAGTGGAGCTCAAGGTCCTGGCATCGCTGCACATACTTGGG
AGGGGCAACTTCTTCGAGGATATGACCCAGATGTCTCACATTAGCGAGCC
GACGATACAAAGCACCTTTCACAAGTTCAACAAGCTTTTCGCGCAAGAGT
TCTACCACGACCACGTGCATCTGCCCACCGCCGGCGAGGACCAAGACCAG
GTGATGAGGCATTACGACCTACCGGGATTTACTGGAGCAATCGGTTCGAC
TGATGTGACCCACATCAAATGGGCGGCTTGCCCGTATTCTTGGGCGAAGC
ACTACACGGGAAAGGAAGGTTTCGCGACCATCGCCTTCCAGGCGATCGTG
GATCACACTGGGCGTCTCCTGGCCGCGACAAAGGGCTTTGGTGGCTCGAT
GAACGACAAGACCATCATCACGTACGACGCGGCCATCACTAAAATCCGCG
AAGACCCGGTCTACAAGGAGAAGGAGTACACTCTCTTCGACAAGCATGGT
GAGCCGTTCCAGCGAAAGGGCAACTACAGCATCGTCGACAATGGGTACAA
CAAGTGGGAGATCCTCATCCCCCCTAGCAAGTTCGCAGGTACCGATATCG
AGATCAGGTGGAGCAAAGCGCTGGAGAGCGTTCGCAAGGACGTCGAGTGT
TTTTTCGGCATCTTGAAGGGCCGTTTTAGAATTTTGAAACTAGGAATTCT
TTTCCAAAGCTTGGAAGACATCAACAACATGTTCTTTACGTGTTGTACGT
TGCACAACATGTTGCATGCGTTCGATGGGCTTGATGAATTCGAGCCTACC
GTGGAATGGGGGGGGAAGGAGGGTCTACACGATCCCTGGGACAACCCGCC
TCTGTTGGATGAAAGCACCACAGGAAGCACTAGTACATCGGTCGACGATG
ACAACGCCAACACGAAGCCAGTACAAGAGCATTTCATATTGAAGAAAGCC
CTCGTGGCACACTTTGAAGTCCGAAGACAACAGAGAAGCATTCGGTGGCT
TAAACACACAGCGCCTGGTCGCCGACACGCGTCTCGCAACGTTGAAATTG
CCAACGTTGAGACTGCCTGA
back to top