mRNA_P-littoralis_Contig156.121.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.121.1
Unique NamemRNA_P-littoralis_Contig156.121.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:365188..365607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size420
Hectar predicted targeting categoryother localisation
Exons1
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789743.4340763-UTR-P-littoralis_Contig156:365187..3651931680789743.4340763-UTR-P-littoralis_Contig156:365187..365193Pylaiella littoralis U1_48UTRP-littoralis_Contig156 365188..365193 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789743.443187-CDS-P-littoralis_Contig156:365193..3656071680789743.443187-CDS-P-littoralis_Contig156:365193..365607Pylaiella littoralis U1_48CDSP-littoralis_Contig156 365194..365607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.121.1prot_P-littoralis_Contig156.121.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 365194..365607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.121.1

>prot_P-littoralis_Contig156.121.1 ID=prot_P-littoralis_Contig156.121.1|Name=mRNA_P-littoralis_Contig156.121.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=138bp
MLRAELTFGCSCADFVFSYRGHKAIRRHCNFLFKVDSLYKIAGQQYLLVG
VQRWFSDRNHYTALVRKTASPGSGWIEYDDAIVEEVDGAVVFRNGVPTSL
FFRRMQRSSVDAFNAEATASKAKSPGHGGRSRKSLSQ*
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mRNA from alignment at P-littoralis_Contig156:365188..365607+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.121.1 ID=mRNA_P-littoralis_Contig156.121.1|Name=mRNA_P-littoralis_Contig156.121.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig156:365188..365607+ (Pylaiella littoralis U1_48)
ACCGTCATGCTCCGTGCAGAACTTACTTTCGGATGTTCTTGCGCCGATTT
CGTTTTCTCGTACAGGGGCCACAAGGCTATTCGACGTCATTGCAACTTCC
TGTTTAAAGTCGACTCACTCTACAAGATCGCCGGTCAACAGTATCTTTTA
GTTGGCGTGCAGCGGTGGTTTTCAGATCGAAATCACTACACGGCGCTTGT
CAGGAAGACTGCTAGCCCCGGATCAGGATGGATCGAGTACGATGATGCGA
TTGTCGAAGAGGTTGACGGCGCGGTCGTGTTCCGCAACGGCGTTCCAACC
TCTTTGTTTTTCAGGCGAATGCAACGTAGTTCTGTCGACGCATTCAACGC
TGAGGCTACGGCGTCTAAGGCCAAGTCACCCGGACATGGGGGTAGGTCGC
GTAAGTCACTATCGCAGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig156:365188..365607+

>mRNA_P-littoralis_Contig156.121.1 ID=mRNA_P-littoralis_Contig156.121.1|Name=mRNA_P-littoralis_Contig156.121.1|organism=Pylaiella littoralis U1_48|type=CDS|length=414bp|location=Sequence derived from alignment at P-littoralis_Contig156:365188..365607+ (Pylaiella littoralis U1_48)
ATGCTCCGTGCAGAACTTACTTTCGGATGTTCTTGCGCCGATTTCGTTTT
CTCGTACAGGGGCCACAAGGCTATTCGACGTCATTGCAACTTCCTGTTTA
AAGTCGACTCACTCTACAAGATCGCCGGTCAACAGTATCTTTTAGTTGGC
GTGCAGCGGTGGTTTTCAGATCGAAATCACTACACGGCGCTTGTCAGGAA
GACTGCTAGCCCCGGATCAGGATGGATCGAGTACGATGATGCGATTGTCG
AAGAGGTTGACGGCGCGGTCGTGTTCCGCAACGGCGTTCCAACCTCTTTG
TTTTTCAGGCGAATGCAACGTAGTTCTGTCGACGCATTCAACGCTGAGGC
TACGGCGTCTAAGGCCAAGTCACCCGGACATGGGGGTAGGTCGCGTAAGT
CACTATCGCAGTGA
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