mRNA_P-littoralis_Contig156.150.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.150.1
Unique NamemRNA_P-littoralis_Contig156.150.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:482741..484757 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size633
Hectar predicted targeting categoryother localisation
Exons2
Cds size528
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789743.25396-CDS-P-littoralis_Contig156:482740..4832491680789743.25396-CDS-P-littoralis_Contig156:482740..483249Pylaiella littoralis U1_48CDSP-littoralis_Contig156 482741..483249 +
1680789743.2667518-CDS-P-littoralis_Contig156:484634..4846531680789743.2667518-CDS-P-littoralis_Contig156:484634..484653Pylaiella littoralis U1_48CDSP-littoralis_Contig156 484635..484653 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789743.2757232-UTR-P-littoralis_Contig156:484653..4847571680789743.2757232-UTR-P-littoralis_Contig156:484653..484757Pylaiella littoralis U1_48UTRP-littoralis_Contig156 484654..484757 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.150.1prot_P-littoralis_Contig156.150.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 482741..484653 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.150.1

>prot_P-littoralis_Contig156.150.1 ID=prot_P-littoralis_Contig156.150.1|Name=mRNA_P-littoralis_Contig156.150.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=176bp
PQYKYASGDNAFLHCTVGFLQARCRDSSTPFAGLQQLLDLANRHRLPPST
STIGDLLAYDHFKRCNTAGQALLLRLILYLRSSSSVFHDLPVPATRLPHG
GAPVDSSPRRSHTQHATRGWGTSPRGRNAPSSSRRTPNGHGPDGASDRRQ
EGKSDRNDRSRSSSSGSNKMPYNTI*
back to top

mRNA from alignment at P-littoralis_Contig156:482741..484757+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.150.1 ID=mRNA_P-littoralis_Contig156.150.1|Name=mRNA_P-littoralis_Contig156.150.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2017bp|location=Sequence derived from alignment at P-littoralis_Contig156:482741..484757+ (Pylaiella littoralis U1_48)
CCGCAGTACAAATACGCAAGTGGCGACAACGCCTTCCTGCACTGCACAGT
GGGCTTCCTGCAGGCTCGCTGCCGCGATTCGTCTACTCCCTTCGCCGGTC
TCCAACAGCTCCTGGATCTGGCCAACCGCCACCGTCTGCCTCCGTCAACC
AGTACAATCGGCGACCTTCTGGCATATGACCACTTCAAGCGTTGTAACAC
CGCGGGCCAAGCCCTTCTCTTGCGGCTGATTCTCTACCTGCGGTCGTCTT
CTTCGGTGTTCCACGACCTCCCGGTTCCTGCCACACGCCTGCCACACGGA
GGGGCTCCCGTCGATTCATCTCCGCGTCGCTCCCACACGCAACACGCCAC
ACGCGGCTGGGGCACTTCGCCTCGCGGTCGTAACGCCCCCTCGAGCTCGC
GAAGAACACCGAACGGCCACGGCCCGGATGGAGCCTCGGACCGCCGCCAG
GAGGGAAAGTCGGACCGGAATGACCGCAGCCGTTCCAGCTCCTCCGGTTC
CAACAAAATGCAAGTCGATGAGGTGTTTGTGAGTTCTGATGTAGCGGTTT
CGGAGGTGGATAGTGTGTCGTCTGTTGTGGTTCCGTTGGAGGCGGGTTCG
CATGACACCCTTTCGCCTCCGGCAGCGTCGCTCGCCTTTCGTTTCGCTCA
GATACAACTCGACGACCACGCTTGCACTTTACAGAACTTGCACATCACAC
ACACCTCACCTCCCGGCACTCCGCTGCGGCACCATGCCTCAACCACCCCC
TCTCCGGCCTCCAATGCTGCACAACTGCAGTTGCTTACCCAAATATTAGC
TTCCATGCAGCACCAGCTTTCCCCCGCCCCTGCGCAATCAGCGCCGCAGC
CTCACCCGGCACACAATGCCCCCCTTTCAGTAGCACACCCCCCTGCCGCC
GTAGAATCACTCGCAGTACCACCCAACCCCACCGCTGCAGCAGTTGCCCC
GGCCCCGCCGCAGTCAACGTTGTTACCCTCGCAGCAGCCACCGCTGCCGC
CCACTGCAGTAGGCTTTACGCCGCCACTGCAGCAGCCAACGTTGCTACCA
CTGCCGCAGCTACCTCTACTGCCCACTACAGTAGATTTTGCGCCGTCACC
GCAACAGCCGACGTTGCTAGCACTGCCGCAGCCACCGCTGCTGCCCCTTA
CCGTTGACTTAGCACCGCCGCCGCCGCCGCCGCCGCTGAAGCAGCCGCCA
CTGCTACCCCCACCGCCCCCTCCGCAGCGACCGCCGCCGCCACCACTGCC
GCCCACCGTAGTAAACTTTGCCCAGCAGTTGCCTGCTCCACTGGCACACA
CGCCGGTACCACCTTGGTCGACTTTACCTGTGCATGGCCCCACGCACTCA
CACCAACACTCCGTTGCTCAGCCTTGGGCTTCTCGTTGTGATGAATCTCT
TTCGCAAGCCGCCGCTAGTGTTTGCGCCGATCCCCAGCAGACTTTGCAAC
ATACGTTGCAACCAACAACTGCAACAGTTCGAACCGCATATCCACCCGCC
GCCGTCTATTGTGCACGACGATCGTGCTCTTCCTGTGTCGTCCACTCAAG
CTCGTGCCCGCCAAGACGCTTTAGATTTAGATGACCGCGAAACTGCCCGG
CAGCGCAACCTTCGCATCGGCCAACAGATGGACAAGATTCGGCAAAATGA
TTTGGAGGCTTTTCATAATGTTGGGCCTTGCAGCCCTGAGGCGTTCTCTC
AATTTGTTTCTTCCCTTCGCAACGTGACCAACGATTTGTTGACTTTGAGT
GACAGTCAACGCGAGCAATCCATCCTCTCCGAACGATGGGCGCCGGGTTG
GTTGCACCACTTGCGCAAGCGAGTGCGCACTGGCATCCGCAACCCTACCG
CCAACGCCGACACTACTTCGCTTGTCGACGACGTTTTTCAACAGGCCGTA
CAACACAATCTGAAGCCCGGCAACTTCGGACCAAGCACTTTGGACTTTTT
GATCCGGAAGTTCGCCGCTGCGTGGAACCTGACGGATGACCAAGCGGGCA
TTGATCGCATCCGGCGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig156:482741..484757+

>mRNA_P-littoralis_Contig156.150.1 ID=mRNA_P-littoralis_Contig156.150.1|Name=mRNA_P-littoralis_Contig156.150.1|organism=Pylaiella littoralis U1_48|type=CDS|length=528bp|location=Sequence derived from alignment at P-littoralis_Contig156:482741..484757+ (Pylaiella littoralis U1_48)
CCGCAGTACAAATACGCAAGTGGCGACAACGCCTTCCTGCACTGCACAGT
GGGCTTCCTGCAGGCTCGCTGCCGCGATTCGTCTACTCCCTTCGCCGGTC
TCCAACAGCTCCTGGATCTGGCCAACCGCCACCGTCTGCCTCCGTCAACC
AGTACAATCGGCGACCTTCTGGCATATGACCACTTCAAGCGTTGTAACAC
CGCGGGCCAAGCCCTTCTCTTGCGGCTGATTCTCTACCTGCGGTCGTCTT
CTTCGGTGTTCCACGACCTCCCGGTTCCTGCCACACGCCTGCCACACGGA
GGGGCTCCCGTCGATTCATCTCCGCGTCGCTCCCACACGCAACACGCCAC
ACGCGGCTGGGGCACTTCGCCTCGCGGTCGTAACGCCCCCTCGAGCTCGC
GAAGAACACCGAACGGCCACGGCCCGGATGGAGCCTCGGACCGCCGCCAG
GAGGGAAAGTCGGACCGGAATGACCGCAGCCGTTCCAGCTCCTCCGGTTC
CAACAAAATGCCGTACAACACAATCTGA
back to top