mRNA_P-littoralis_Contig156.120.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.120.1
Unique NamemRNA_P-littoralis_Contig156.120.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:361046..363926 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size503
Hectar predicted targeting categoryother localisation
Exons5
Cds size282
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.120.1prot_P-littoralis_Contig156.120.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 361059..363591 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789743.0486436-UTR-P-littoralis_Contig156:361045..3610581680789743.0486436-UTR-P-littoralis_Contig156:361045..361058Pylaiella littoralis U1_48UTRP-littoralis_Contig156 361046..361058 +
1680789743.1041815-UTR-P-littoralis_Contig156:363591..3636911680789743.1041815-UTR-P-littoralis_Contig156:363591..363691Pylaiella littoralis U1_48UTRP-littoralis_Contig156 363592..363691 +
1680789743.1153018-UTR-P-littoralis_Contig156:363818..3639261680789743.1153018-UTR-P-littoralis_Contig156:363818..363926Pylaiella littoralis U1_48UTRP-littoralis_Contig156 363819..363926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789743.0584586-CDS-P-littoralis_Contig156:361058..3610691680789743.0584586-CDS-P-littoralis_Contig156:361058..361069Pylaiella littoralis U1_48CDSP-littoralis_Contig156 361059..361069 +
1680789743.071754-CDS-P-littoralis_Contig156:361280..3613221680789743.071754-CDS-P-littoralis_Contig156:361280..361322Pylaiella littoralis U1_48CDSP-littoralis_Contig156 361281..361322 +
1680789743.081994-CDS-P-littoralis_Contig156:361517..3616771680789743.081994-CDS-P-littoralis_Contig156:361517..361677Pylaiella littoralis U1_48CDSP-littoralis_Contig156 361518..361677 +
1680789743.0927763-CDS-P-littoralis_Contig156:363522..3635911680789743.0927763-CDS-P-littoralis_Contig156:363522..363591Pylaiella littoralis U1_48CDSP-littoralis_Contig156 363523..363591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.120.1

>prot_P-littoralis_Contig156.120.1 ID=prot_P-littoralis_Contig156.120.1|Name=mRNA_P-littoralis_Contig156.120.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=94bp
MQTRRTGTRMMSKKMQTSLMPRGRPRSRARAGPRAGPRAGSRAGPRAGLR
AGPRAGPRAPPWSVTRQRTREWAAKRSQQLSSDQQRPDYGGLP*
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mRNA from alignment at P-littoralis_Contig156:361046..363926+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.120.1 ID=mRNA_P-littoralis_Contig156.120.1|Name=mRNA_P-littoralis_Contig156.120.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2881bp|location=Sequence derived from alignment at P-littoralis_Contig156:361046..363926+ (Pylaiella littoralis U1_48)
CAAAAGGAACCAGATGCAGACGAGGTATTGAAAAGAGGAGGGGGGGGGGT
GGGGGTGGGGGGTGGGGCAGAACCATGGCTTTCGGATCTCTTGGGTGGTG
ATACACCCTTTTGTTGCTCGTTGCTTCTCGTTGAGCTCTGTTTCCCTCGA
GTGTTTGCCGAAATACAACCGTTGACGAGCTCGCGGTTTGGCTTTGCTTT
GTTCAACCTCTTTAAAATACCGCTGGCCGAAACAGGAGGACGGGGACGAG
GATGATGAGCAAGAAGATGCAGACCAGGTATTAAAAAGAGGGGGGGGGGA
ATAGAATCATGCTTTTGGGATGTTTTTTGAGTGGTGGTTCACCCTTTTGC
TGCTCGTTGCGTCCAGTTGAGCTCAATAATTGATTGCAGGGGATGTCCCA
CTCAACCCCCTGCCACCGTAGTATGTAAAATGTACAAGTTGGTGTGACCC
ATTTCCCCTTTTCCGCACCAAGTCTAATGCCACGAGGACGGCCGCGGTCA
AGGGCAAGGGCAGGGCCAAGAGCGGGACCAAGAGCGGGATCAAGAGCGGG
ACCGAGAGCGGGACTAAGAGCGGGACCGAGAGCGGGACCAAGAGCGCCCC
CGTGGTCGGTGACACGACAACGGACGCGAGAGGTGAATGTGTTGCATGTG
TGCGTTTTTGTCTCTCGGATATCGCGCCATGTCTACTCCAATTTTCAACA
CGTTGTATAGTGATCTGATCCGCGTCACCCTCACGTTTCGGCGCTCGGTT
GTATTTGATATGGGGTCGAGGATGCAAGGTGCGCGATATCCCATCCAATC
AGATGTTACACCTACGGGAAAGGAAAGGAACAAACTCCTGGGGGAATGGG
CGCGTATGCCTGTGAAGAGTGGTGTGGAGTCGCTATTCTTTTACACACAA
AGGCTGCCCGGAGGATTGGAGAAGGGCGTGTGGGTGTTTCCGCCTGTGAT
TGACCCTCATCGCGAAGTCTCGGAGGACGGTTACGTATTGCTGAGGGTTG
GACAGTGGAGTAAGAAGGAGACGGAATCCATTAAACACGGGGATCCCAAA
GTACGAGGCTTGACGGTGATCAGAAAATACACCGCCGATGAAGTGGCCGA
TTACGCTCGCGAAAATGCCCCTTTCAACTGGATGCACGCGTTGAAAATTG
CGAAGTCTTGGGACGTGCGAAACGAGGAGGAGAGGGACCTGCTTGAAAAT
GATCCGTTTCTGAATGAGAGGGATATAGAGAGCGGGCTGGGGGCGGAGGT
GATCGAGAAAATGAAGAAGACCATGTTGTGGATGCAGCCAGGCTCTGCAT
CTCACGGTCACCTCAAGAAGTTGGCCAAACCAACTGCCGAGGCTGCCCCT
GGGCCTCACTAGGTGTTGTTCCCACGGATGCGCGAGTTGGGACGAGGTGA
TAGCTTTCACGTACAGCGCCCCGTTGGATTTTCTTTCAGTTAACACTGCT
CACGTCGGTGTGTTGTGCCTGTCATTTGTTTTGTTTCGCAGGTACGAGGG
GTAGGCTAAGCTAGGCAGACAAAGAGAGTCGCCAAAAAGAGACGGAGAGT
TGCCACAATACATACTGGCATATGAACGGCATCGTAGAGTACGTCAAGTC
AGAGGGTTCGATGTGGTTTGTCAGTACCGATCGGGATCTGAACAGGACAT
CCTACGTCTTGCCTGATGTGTGTCTAGCTACGGGCAACGCGGTACTGACC
AAGGTGAAGGACGGGGAAAGAATAGTGAGGGATCTCCGTCTGGATCCGTC
TTCGCGCCGGCGCGAGGTTGAGAATGGGGATGCGGTAGCGGCGGCTTTTC
CGAATTTGCCGTTGTTGTTTGATGGCACCGAGCTTGTTGCTAGGTTTGTC
AGGCGATCGGAGCCATTTCGCAGTATGCCAAGTATGTGGTACAGGACCCC
GACGTTTTAGACAAGGCTTCAATGTCGTCTCTCAAGAAAGAGCTAGAGGA
GCTTGTTAAGTTTTGGCCCCACGACAACAAGGGCCACCCTTTTGAGGTTG
AATACGGGTGGCCCGAGGAGGACGGTGTTGATGATGGCGGGGAGGGGGAG
GTGATTGGCGAGGAATAATACGGCGGTGAAAACTTGAGTTGTTGGGCAGG
GTTAGCAAGATTTCAATGCGTACACAACCAATACTGCCAGTATCAATTTT
TTTGGGGCCTGATGATTGACCGATGGAGCTTTTGTTTGAAACGTCGCACC
CCTTTGCATGGAAGAGATTTGTGTCCCGGGGGGGAAGATCATCGCTATGA
CGCTCGTCTCGGGGACCAGTTGGCAGCTCGAAACAGGTAGCTGGCCGTGG
GTTCTTGCAGATTGTAGAAATTCCTATCGGACAAAAAGAGTCGTTCCAAG
CGAACTACATTGAGTGAGATTTTTGGGCGACAGACACCCTTGGCAACACC
AGCATGTATCCATGTATGCCCGCGTGGTTACTTTTGATCATGAAACACGC
GTGCCTTGCTTTTTTTTACATTGACAGTGGGCTGCAAAACGAAGCCAACA
ACTGTCATCTGATCAGCAACGTCCAGATTATGGCGGTCTTCCCTGAGTTT
TTGGAAGCGGTCGGAACGGCGGCCAAGAAGGCGCTAGGGGACGGTGACGA
GATATTCAATCTGAACCTCGGTATTCTCTTCGACAAAGCACTTGAGGTGG
GTTGGTCAACTCTGGAAACTCCCCGCTTGCGCTCTTCCATGTTTTTTGTT
TATAGTTGCATTCTCACCGGATTCTCACCGGATGCAAAAATACCACTCGC
TAAAACTTTGTGCGTCCGCACAGGGGACCGACTCGGGTGGAAGAAACGAG
CTCATCGGCGCCGTCCGTGATAAGCTGAGTGACGTTTGCGCAATTGATCC
CGTGGAAGGCTTTACCAACGATGGCGTAGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig156:361046..363926+

>mRNA_P-littoralis_Contig156.120.1 ID=mRNA_P-littoralis_Contig156.120.1|Name=mRNA_P-littoralis_Contig156.120.1|organism=Pylaiella littoralis U1_48|type=CDS|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig156:361046..363926+ (Pylaiella littoralis U1_48)
ATGCAGACGAGGAGGACGGGGACGAGGATGATGAGCAAGAAGATGCAGAC
CAGTCTAATGCCACGAGGACGGCCGCGGTCAAGGGCAAGGGCAGGGCCAA
GAGCGGGACCAAGAGCGGGATCAAGAGCGGGACCGAGAGCGGGACTAAGA
GCGGGACCGAGAGCGGGACCAAGAGCGCCCCCGTGGTCGGTGACACGACA
ACGGACGCGAGAGTGGGCTGCAAAACGAAGCCAACAACTGTCATCTGATC
AGCAACGTCCAGATTATGGCGGTCTTCCCTGA
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