mRNA_P-littoralis_Contig156.70.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.70.1
Unique NamemRNA_P-littoralis_Contig156.70.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.70.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:236907..237408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size165
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789742.9066663-CDS-P-littoralis_Contig156:236906..2369881680789742.9066663-CDS-P-littoralis_Contig156:236906..236988Pylaiella littoralis U1_48CDSP-littoralis_Contig156 236907..236988 -
1680789742.921568-CDS-P-littoralis_Contig156:237325..2374081680789742.921568-CDS-P-littoralis_Contig156:237325..237408Pylaiella littoralis U1_48CDSP-littoralis_Contig156 237326..237408 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.70.1prot_P-littoralis_Contig156.70.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 236907..237408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.70.1

>prot_P-littoralis_Contig156.70.1 ID=prot_P-littoralis_Contig156.70.1|Name=mRNA_P-littoralis_Contig156.70.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=55bp
RSNPPNDLLPGSILHGLQGLLRVGILVRSSLRLAGSPTGTARVPSPTKCC
DISK*
back to top

mRNA from alignment at P-littoralis_Contig156:236907..237408-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.70.1 ID=mRNA_P-littoralis_Contig156.70.1|Name=mRNA_P-littoralis_Contig156.70.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=502bp|location=Sequence derived from alignment at P-littoralis_Contig156:236907..237408- (Pylaiella littoralis U1_48)
CGTTCCAACCCTCCGAATGATCTCCTCCCTGGTTCGATCCTTCATGGACT
GCAGGGTCTCCTTCGTGTGGGCATACTCGTCAGGCAAGGCGGAGACGAAG
CGAGCGTGTACCATGGGTTCAGGAACTCGTGGTAGGCCTTTCTCCTGCAT
CCTGTTGTTGAGGTCTTCTAGCTCATGGAATGCAGCAACCGGGTTCCCGT
GAGCTGGTATTTTGAATTGGTGGAACTTTTCGTACAGCCTCTGCGTGGCT
ATCTCACTCTCTGGGTCGTAGAACTGCTCGAGGTAGTTGAACGCTTCTCT
TGGTGACTTGCATCTCTGAAGTACCGCCCTGTCTTCCTCCTTTTTCAGCG
ATTCGTCCAGAAAAGTCCATGCAAGACGGGCCTCTCTTATCTCTCCCGCC
GTGAAACCCTCTCTCAACAGGTCATCCTTGCGTTTGGCCGGGTCTCCTAC
TGGAACCGCACGCGTCCCCTCTCCCACGAAGTGCTGTGATATATCTAAGT
GA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig156:236907..237408-

>mRNA_P-littoralis_Contig156.70.1 ID=mRNA_P-littoralis_Contig156.70.1|Name=mRNA_P-littoralis_Contig156.70.1|organism=Pylaiella littoralis U1_48|type=CDS|length=165bp|location=Sequence derived from alignment at P-littoralis_Contig156:236907..237408- (Pylaiella littoralis U1_48)
CGTTCCAACCCTCCGAATGATCTCCTCCCTGGTTCGATCCTTCATGGACT
GCAGGGTCTCCTTCGTGTGGGCATACTCGTCAGGTCATCCTTGCGTTTGG
CCGGGTCTCCTACTGGAACCGCACGCGTCCCCTCTCCCACGAAGTGCTGT
GATATATCTAAGTGA
back to top