mRNA_P-littoralis_Contig156.48.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.48.1
Unique NamemRNA_P-littoralis_Contig156.48.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.48.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:182522..183356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size209
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789742.7836277-UTR-P-littoralis_Contig156:182521..1825401680789742.7836277-UTR-P-littoralis_Contig156:182521..182540Pylaiella littoralis U1_48UTRP-littoralis_Contig156 182522..182540 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789742.79193-CDS-P-littoralis_Contig156:182540..1826041680789742.79193-CDS-P-littoralis_Contig156:182540..182604Pylaiella littoralis U1_48CDSP-littoralis_Contig156 182541..182604 -
1680789742.800003-CDS-P-littoralis_Contig156:183231..1833561680789742.800003-CDS-P-littoralis_Contig156:183231..183356Pylaiella littoralis U1_48CDSP-littoralis_Contig156 183232..183356 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.48.1prot_P-littoralis_Contig156.48.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 182541..183356 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.48.1

>prot_P-littoralis_Contig156.48.1 ID=prot_P-littoralis_Contig156.48.1|Name=mRNA_P-littoralis_Contig156.48.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=63bp
LPQKSRAARESSRHNSTSCAAQRERLGVRKGSPARRSPRLYCRVSNSIRH
GDGSMQCLSSCG*
back to top

mRNA from alignment at P-littoralis_Contig156:182522..183356-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.48.1 ID=mRNA_P-littoralis_Contig156.48.1|Name=mRNA_P-littoralis_Contig156.48.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=835bp|location=Sequence derived from alignment at P-littoralis_Contig156:182522..183356- (Pylaiella littoralis U1_48)
CTCCCCCAAAAAAGTCGCGCCGCGCGCGAGAGTTCGAGGCACAACTCCAC
CTCGTGCGCAGCGCAGAGAGAACGGCTCGGCGTCAGGAAGGGATCACCGG
CGAGAAGAAGTCCTAGGCTATACTGGTGAGTTGGTTTCATCACCATAACC
ACAGTAGCGAGACTACACGCGGCATCCTCGTGAAGGCGCGTGTTTCAGAT
TGGAATCGTCGGCCCGGGTATTTTACAGCAGCATTGGTGTGGTGTTTATG
CAGCCGCGCGGGTCTGCAGCATGCACAATATGCGAGACTAAGTACGCCAT
ACGTGGGATAGACATGTTGAGAACACCCGTGGCTTGTCCGAGTTTTGGAT
CAAAACTACAGCCGGAGCTAGAGGTATTTGAAAAAGCACACAAATCTGCT
GCACGATCCCGCCGCTTGCGATAACTACTTGATTTCAGAGTGTGTCGTGG
GCATTTTTTTGTGCTGTTCTATGCATGCACCACCCCGCAGCGCTGCTACC
CCACTGCTGTTTCCACTGCTGTACGGTACTTGCACAGCGCGGAGTAGTAC
CTGAGCTGTACGGGTACATACACAGCACGGAGTAGTAACGGAGCTGCACG
TTTCTGAGTGTGTGTTGTAATACCAGGCGTGTATGGTGCATATATAAACG
TATGTATCCGCCGCGTACTCATCACATGTCATCTGCTCCCGCTGTCTGCT
GCTTTCGTCTTTCACGACGCGTTGTTCTACTCGGGACGGCTTTTGGCTGT
AGCCGTGTGAGCAACAGCATACGACATGGAGATGGAAGTATGCAGTGCCT
GTCGTCGTGCGGATGATGGGACCGGCTTGAGAAAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig156:182522..183356-

>mRNA_P-littoralis_Contig156.48.1 ID=mRNA_P-littoralis_Contig156.48.1|Name=mRNA_P-littoralis_Contig156.48.1|organism=Pylaiella littoralis U1_48|type=CDS|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig156:182522..183356- (Pylaiella littoralis U1_48)
CTCCCCCAAAAAAGTCGCGCCGCGCGCGAGAGTTCGAGGCACAACTCCAC
CTCGTGCGCAGCGCAGAGAGAACGGCTCGGCGTCAGGAAGGGATCACCGG
CGAGAAGAAGTCCTAGGCTATACTGCCGTGTGAGCAACAGCATACGACAT
GGAGATGGAAGTATGCAGTGCCTGTCGTCGTGCGGATGA
back to top