mRNA_P-littoralis_Contig156.45.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig156.45.1
Unique NamemRNA_P-littoralis_Contig156.45.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig156.45.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig156contigP-littoralis_Contig156:179135..180003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size250
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size171
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789742.7239282-CDS-P-littoralis_Contig156:179134..1792181680789742.7239282-CDS-P-littoralis_Contig156:179134..179218Pylaiella littoralis U1_48CDSP-littoralis_Contig156 179135..179218 +
1680789742.7325156-CDS-P-littoralis_Contig156:179509..1795911680789742.7325156-CDS-P-littoralis_Contig156:179509..179591Pylaiella littoralis U1_48CDSP-littoralis_Contig156 179510..179591 +
1680789742.7435122-CDS-P-littoralis_Contig156:179919..1799241680789742.7435122-CDS-P-littoralis_Contig156:179919..179924Pylaiella littoralis U1_48CDSP-littoralis_Contig156 179920..179924 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789742.7559743-UTR-P-littoralis_Contig156:179924..1800031680789742.7559743-UTR-P-littoralis_Contig156:179924..180003Pylaiella littoralis U1_48UTRP-littoralis_Contig156 179925..180003 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig156.45.1prot_P-littoralis_Contig156.45.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig156 179135..179924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig156.45.1

>prot_P-littoralis_Contig156.45.1 ID=prot_P-littoralis_Contig156.45.1|Name=mRNA_P-littoralis_Contig156.45.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=57bp
TPTAVRGTPRRAQVLLRPSWGRASKVLACVPQRHEAVQYEHMTHSRAMLL
VAAAAN*
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mRNA from alignment at P-littoralis_Contig156:179135..180003+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig156.45.1 ID=mRNA_P-littoralis_Contig156.45.1|Name=mRNA_P-littoralis_Contig156.45.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=869bp|location=Sequence derived from alignment at P-littoralis_Contig156:179135..180003+ (Pylaiella littoralis U1_48)
ACGCCGACAGCAGTGCGTGGTACGCCACGGAGGGCACAGGTGCTGCTGAG
GCCATCCTGGGGGCGAGCGTCGAAGGTTCTTGCTGTGAGTGTTGCAGGGA
GTCGGACTGGCAGCACTCTGTTGGCTGGAGAACGTCGCGCTGCAGAGTCG
CTGCAGAGTGTGTGCCTGCTGCTGTTGTTGGATGCAGATGTATGTGTGCA
CAGGTGTGCAGCTGCGCAGTACAAGTATTGAGAGATTGTCGGGTATGATT
GCTACTGCTGTGCAACGTCTTTCCCAGATTGCAGCAGCGATATACCTGTG
CCAATAATACCAAAGGTGCAACCTCCTGGTTGCTGCTTGCTTTGGCTGTT
CCCTGCAACGGGTGCTGTGTCGCAGTGCGTACCACAGAGACATGAAGCGG
TTCAATACGAACACATGACACACAGCCGTGCCATGCTGCTGGTTGCTGCT
GCAGCAAGTGAGTACATTCTGTACATTATGTACAGCAGTACACAGACGAT
CGAACTGCCCTGCCTGATACATACTCCGAGTATCCATCAGCACGTGCATA
CAGCACTGCTGTGTCGTAGACTGCCCTCCCTGCCTTATACTTACCCAAAT
AAATCCACGTACAAGTACCAAGCCCGTGACGTACATGCGTTCCTCCTGCT
TTCCATGTTGCTGACGGGGGGCGGCGCAGGCTACTTAGTGTAGCCCACTT
GCTGTGTGTTTGTTATTTGAACGTTGTGAAACGTGTACTTTAAACGTTTG
CTCCGTCCGTCCGTGATGCTCAAATGTGTAAACAGACTGAGATGACATCC
CGCGCGGATCTGGAGGAAAACTGTAGGGAGTTTTTGTCGAAAGTTGAGCA
GCGTGTACAGGCACTCGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig156:179135..180003+

>mRNA_P-littoralis_Contig156.45.1 ID=mRNA_P-littoralis_Contig156.45.1|Name=mRNA_P-littoralis_Contig156.45.1|organism=Pylaiella littoralis U1_48|type=CDS|length=171bp|location=Sequence derived from alignment at P-littoralis_Contig156:179135..180003+ (Pylaiella littoralis U1_48)
ACGCCGACAGCAGTGCGTGGTACGCCACGGAGGGCACAGGTGCTGCTGAG
GCCATCCTGGGGGCGAGCGTCGAAGGTTCTTGCTTGCGTACCACAGAGAC
ATGAAGCGGTTCAATACGAACACATGACACACAGCCGTGCCATGCTGCTG
GTTGCTGCTGCAGCAAACTGA
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