mRNA_P-littoralis_Contig1552.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1552.1.1
Unique NamemRNA_P-littoralis_Contig1552.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1552.1.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 3.480e-47
Identity = 77/93 (82.80%), Postives = 84/93 (90.32%), Query Frame = 1 
Query:    1 ALQILGRGNCFD-INQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFHGQ 276
            ALQILGRGNCFD I QLSLMSK MAAATFHKFCK+FA+E+FEEHIYLPTG+YQDEVM  Y KLG T AIGSTDVTH+GWGMCPFTLGRS+ G+
Sbjct:    7 ALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGK 99
[Close]
BLAST of mRNA_P-littoralis_Contig1552.1.1 vs. uniprot
Match: A0A6H5K6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N4_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 6.300e-47
Identity = 75/92 (81.52%), Postives = 82/92 (89.13%), Query Frame = 1 
Query:    4 LQILGRGNCFD-INQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFHGQ 276
            LQ LGRGNCFD I QLSLMSK MAAATFHKFCK+FA+E+FEEHIYLPTG+YQDEVM  Y KLG T AIGSTDVTH+GWGMCPFTLGRS+ G+
Sbjct:    8 LQTLGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGK 99
[Close]
BLAST of mRNA_P-littoralis_Contig1552.1.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 1.810e-45
Identity = 77/93 (82.80%), Postives = 84/93 (90.32%), Query Frame = 1 
Query:    1 ALQILGRGNCFD-INQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFHGQ 276
            ALQILGRGNCFD I QLSLMSK MAAATFHKFCK+FA+E+FEEHIYLPTG+YQDEVM  Y KLG T AIGSTDVTH+GWGMCPFTLGRS+ G+
Sbjct:  254 ALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGK 346
[Close]
BLAST of mRNA_P-littoralis_Contig1552.1.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 2.960e-40
Identity = 66/91 (72.53%), Postives = 77/91 (84.62%), Query Frame = 1 
Query:    7 QILGRGNCFD-INQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFHGQ 276
            Q+LG+GNCFD + QLS MSKSMA  TFHKFC++FA EMF+EHIYLPTGTY DEVM  + +LG+T A GSTDVTH+GW MCPFTLGRSF G+
Sbjct:   42 QVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGK 132
[Close]
BLAST of mRNA_P-littoralis_Contig1552.1.1 vs. uniprot
Match: A0A6H5JIW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW4_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.440e-37
Identity = 63/91 (69.23%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:    7 QILGRGNCFD-INQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFHGQ 276
            ++LG+G CFD + QLS MSKSMA ATFHKF ++FA EMF+EHIYLPTGTY DEVM  + +LG T A GSTDVTH+GW MCPFTLGR F G+
Sbjct:    3 RVLGKGTCFDDVEQLSKMSKSMAQATFHKFRRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGWNMCPFTLGRPFTGK 93
[Close]
BLAST of mRNA_P-littoralis_Contig1552.1.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 3.240e-35
Identity = 62/92 (67.39%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    4 LQILGRGNCFD-INQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFHGQ 276
            L++LG+GNCFD + QLS MS+S+A A FHKFC++ A EMF+EHIYLPTGTY DEVM  + +LG T A GSTDVTH+G  MCPFTLGRSF G+
Sbjct:  137 LKVLGKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGK 228
[Close]
BLAST of mRNA_P-littoralis_Contig1552.1.1 vs. uniprot
Match: A0A6H5K872_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K872_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 3.180e-31
Identity = 59/92 (64.13%), Postives = 70/92 (76.09%), Query Frame = 1 
Query:    4 LQILGRGNCFD-INQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFHGQ 276
            L +LG+GNCFD + QLS MS SMA ATFHKFC++FA EMF+EHI+ PT TY DE M  + +LG T A  STDVTH+   MCPFTLGRSF G+
Sbjct:  102 LTVLGKGNCFDDVEQLSKMSISMAQATFHKFCRHFAAEMFDEHIFSPTETYLDEFMGIFHQLGCTGACRSTDVTHIDCNMCPFTLGRSFTGK 193
[Close]
BLAST of mRNA_P-littoralis_Contig1552.1.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.490e-29
Identity = 55/92 (59.78%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:    4 LQILGRGNCF-DINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGTYQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFHGQ 276
            LQIL RGNCF DI  +S +S   AAATFH+F + FA+EM+ EHI+LPTG YQ +VM  Y +LGF+ A GSTDVTH+ WGMCP+   RS+ G+
Sbjct:  163 LQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGK 254
[Close]
BLAST of mRNA_P-littoralis_Contig1552.1.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.410e-27
Identity = 53/94 (56.38%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:    4 LQILGRGNCF-DINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPT--GTYQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFHGQ 276
            L ILGRGNCF  I Q+S MS +   A FHKFCK+FA+EM++EHIYLP+      D VM  Y +LGF+ A+GS DVTH+GW  CP+ L RS+ G+
Sbjct:  130 LTILGRGNCFASIYQMSWMSAATVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGK 223
[Close]
BLAST of mRNA_P-littoralis_Contig1552.1.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.360e-25
Identity = 52/94 (55.32%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:    4 LQILGRGNCF-DINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPT--GTYQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFHGQ 276
            L ILGRGNCF  I Q+S MS       FHKFCK+FA+EM++EHIYLP+      D VM  Y +LGF+ A+GS DVTH+GW  CP+ L RS+ G+
Sbjct:  103 LTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGK 196
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1552.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KH50_9PHAE3.480e-4782.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6N4_9PHAE6.300e-4781.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCU6_9PHAE1.810e-4582.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE2.960e-4072.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIW4_9PHAE1.440e-3769.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI7_9PHAE3.240e-3567.39DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5K872_9PHAE3.180e-3164.13DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JAU4_9PHAE2.490e-2959.78Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L642_9PHAE1.410e-2756.38Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JHI0_9PHAE1.360e-2555.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1552contigP-littoralis_Contig1552:11422..11697 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size276
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.04e-09
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size276
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789742.3506188-CDS-P-littoralis_Contig1552:11421..116971680789742.3506188-CDS-P-littoralis_Contig1552:11421..11697Pylaiella littoralis U1_48CDSP-littoralis_Contig1552 11422..11697 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1552.1.1prot_P-littoralis_Contig1552.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1552 11422..11697 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1552.1.1

>prot_P-littoralis_Contig1552.1.1 ID=prot_P-littoralis_Contig1552.1.1|Name=mRNA_P-littoralis_Contig1552.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=92bp
ALQILGRGNCFDINQLSLMSKSMAAATFHKFCKNFAKEMFEEHIYLPTGT
YQDEVMDCYRKLGFTTAIGSTDVTHVGWGMCPFTLGRSFHGQ
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mRNA from alignment at P-littoralis_Contig1552:11422..11697-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1552.1.1 ID=mRNA_P-littoralis_Contig1552.1.1|Name=mRNA_P-littoralis_Contig1552.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig1552:11422..11697- (Pylaiella littoralis U1_48)
GCCCTCCAGATACTCGGCAGGGGCAACTGCTTCGACATCAACCAGCTGTC
GTTAATGAGCAAATCGATGGCGGCAGCAACGTTCCACAAGTTCTGCAAGA
ACTTCGCGAAGGAGATGTTCGAGGAGCATATCTACCTTCCAACAGGAACG
TACCAAGACGAAGTGATGGACTGCTACCGTAAACTGGGTTTTACTACAGC
AATCGGTTCTACCGACGTCACTCACGTCGGCTGGGGCATGTGTCCGTTCA
CCCTTGGCCGTTCTTTTCACGGGCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1552:11422..11697-

>mRNA_P-littoralis_Contig1552.1.1 ID=mRNA_P-littoralis_Contig1552.1.1|Name=mRNA_P-littoralis_Contig1552.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig1552:11422..11697- (Pylaiella littoralis U1_48)
GCCCTCCAGATACTCGGCAGGGGCAACTGCTTCGACATCAACCAGCTGTC
GTTAATGAGCAAATCGATGGCGGCAGCAACGTTCCACAAGTTCTGCAAGA
ACTTCGCGAAGGAGATGTTCGAGGAGCATATCTACCTTCCAACAGGAACG
TACCAAGACGAAGTGATGGACTGCTACCGTAAACTGGGTTTTACTACAGC
AATCGGTTCTACCGACGTCACTCACGTCGGCTGGGGCATGTGTCCGTTCA
CCCTTGGCCGTTCTTTTCACGGGCAA
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