mRNA_P-littoralis_Contig1551.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1551.2.1
Unique NamemRNA_P-littoralis_Contig1551.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1551.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1551contigP-littoralis_Contig1551:3725..4355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size632
Hectar predicted targeting categorysignal peptide
Exons1
Cds size630
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789742.3185964-CDS-P-littoralis_Contig1551:3725..43551680789742.3185964-CDS-P-littoralis_Contig1551:3725..4355Pylaiella littoralis U1_48CDSP-littoralis_Contig1551 3726..4355 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1551.2.1prot_P-littoralis_Contig1551.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1551 3726..4355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1551.2.1

>prot_P-littoralis_Contig1551.2.1 ID=prot_P-littoralis_Contig1551.2.1|Name=mRNA_P-littoralis_Contig1551.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=210bp
GNQHRSFFFFSTSSLCGVCVLSSLLLDDHWMSLSGEAGERFKRAIGSAQQ
QAGGPEALRGARSGLGTAIGRRGSKRKNTQPEQSSKTNDGGTSKKPVPVT
SPRTAGAKDKGKRAVGSGGRGKPVPGKSLMSKKQGGIQDKGKKQAAGGGS
TGGRGGRKSKNLPLLVCYDSDGNNDIHEEFSGCGSFACLTINKKKLVSDL
EKIPEAAYKK
back to top

mRNA from alignment at P-littoralis_Contig1551:3725..4355-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1551.2.1 ID=mRNA_P-littoralis_Contig1551.2.1|Name=mRNA_P-littoralis_Contig1551.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=631bp|location=Sequence derived from alignment at P-littoralis_Contig1551:3725..4355- (Pylaiella littoralis U1_48)
GGAAATCAACACAGGAGTTTTTTTTTTTTCTCCACTTCTTCCCTCTGCGG
TGTGTGTGTGTTGTCATCCCTTTTATTGGACGATCACTGGATGTCGTTAT
CAGGGGAAGCAGGAGAGAGGTTCAAACGCGCGATCGGCTCAGCGCAACAA
CAGGCTGGAGGTCCCGAGGCATTGCGGGGTGCTCGCTCGGGGCTGGGCAC
GGCAATAGGGAGGAGGGGTAGCAAGAGGAAAAACACGCAGCCAGAGCAGT
CGAGCAAAACAAATGACGGCGGCACATCCAAGAAACCGGTACCTGTGACG
TCACCACGGACTGCCGGGGCTAAAGACAAGGGGAAGAGGGCGGTGGGGAG
TGGTGGTAGAGGGAAGCCAGTACCCGGGAAGTCGTTAATGTCGAAAAAAC
AAGGCGGGATCCAAGACAAGGGCAAGAAGCAGGCGGCGGGGGGTGGGAGC
ACGGGTGGTAGAGGGGGCAGGAAGTCGAAGAATCTTCCACTTCTCGTATG
CTACGATTCGGACGGCAACAACGACATCCACGAAGAATTCTCAGGGTGTG
GGTCGTTTGCGTGTTTGACGATCAACAAGAAGAAACTCGTCTCCGACCTC
GAGAAGATACCTGAGGCGGCGTACAAGAAGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1551:3725..4355-

>mRNA_P-littoralis_Contig1551.2.1 ID=mRNA_P-littoralis_Contig1551.2.1|Name=mRNA_P-littoralis_Contig1551.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=630bp|location=Sequence derived from alignment at P-littoralis_Contig1551:3725..4355- (Pylaiella littoralis U1_48)
GGAAATCAACACAGGAGTTTTTTTTTTTTCTCCACTTCTTCCCTCTGCGG
TGTGTGTGTGTTGTCATCCCTTTTATTGGACGATCACTGGATGTCGTTAT
CAGGGGAAGCAGGAGAGAGGTTCAAACGCGCGATCGGCTCAGCGCAACAA
CAGGCTGGAGGTCCCGAGGCATTGCGGGGTGCTCGCTCGGGGCTGGGCAC
GGCAATAGGGAGGAGGGGTAGCAAGAGGAAAAACACGCAGCCAGAGCAGT
CGAGCAAAACAAATGACGGCGGCACATCCAAGAAACCGGTACCTGTGACG
TCACCACGGACTGCCGGGGCTAAAGACAAGGGGAAGAGGGCGGTGGGGAG
TGGTGGTAGAGGGAAGCCAGTACCCGGGAAGTCGTTAATGTCGAAAAAAC
AAGGCGGGATCCAAGACAAGGGCAAGAAGCAGGCGGCGGGGGGTGGGAGC
ACGGGTGGTAGAGGGGGCAGGAAGTCGAAGAATCTTCCACTTCTCGTATG
CTACGATTCGGACGGCAACAACGACATCCACGAAGAATTCTCAGGGTGTG
GGTCGTTTGCGTGTTTGACGATCAACAAGAAGAAACTCGTCTCCGACCTC
GAGAAGATACCTGAGGCGGCGTACAAGAAG
back to top