mRNA_P-littoralis_Contig1550.1.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1550.1.1 vs. uniprot
Match: A0A6H5J849_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J849_9PHAE) HSP 1 Score: 258 bits (658), Expect = 1.610e-76 Identity = 155/363 (42.70%), Postives = 219/363 (60.33%), Query Frame = 2
Query: 434 IRKRLVGSLTPPFYGGPSPGTLTESNCAVF-----------LEEKMRSTLRTLESGVAQLEKDELVDGGWSTVPDEHTPRRIEMLSEFVQGHLATRDAMDSDEPLEVWSLTGDVQIKRREQVTCTDYLRLLVREQALTSGSRELAETALDAIVRQPNEAWAAAAARVVKVFRATFANADRPCVSETQFFWRFVTEADMRHLFSRLTDVLMPNPFERNGVSSLLLQHTQRVSESMRKLRLELHDPTGVAMVSRGVETQKLFKEFAGVLSAQSVS--CRQPARKGVSKQVGSDNMFSLQELSELFASKQSLAAFTAGRVAPMVRDTKVAAVAPLGYIHSVVPEPALELSHPRVAAFQNQVASTPG 1483
+RKR+ G P YGGPS G LT +N AV L +K+ S L +ESG +LE D VDG + T DE TPRR+E++S+FVQ +L+ + + + + V+ +TG+V K +VT TD+LRL VRE ALT G+ ELA +A A+ P E W+AAAARV+ VFRAT A+ +RP ++E FWRF T + L+ R+ +VL+PNPF+RNGVS++L + + S+ LR+E HDP G AM RGV +KLF++F GVLSA++ S P RK + K G D +F++ E LFA+ + A + P V +A+AP + VP P + P+VAA+QN+ A+ PG
Sbjct: 1 MRKRIAGDKPCPVYGGPSSGPLTIANSAVMXXXXXXXXXXMLLDKVMSVLHNVESGKMRLEPDVYVDGRYVTFADEFTPRRVELISDFVQEYLSVSQQIANADHVHVYLITGEVITKPHREVTATDWLRLYVREHALTGGAAELARSAFSALTLTPGEGWSAAAARVLSVFRATRADPERPYMTEQALFWRFATPVALIELYDRVVEVLLPNPFDRNGVSAILHETAYETTSSLGPLRMEWHDPLGEAMARRGVTAEKLFRKFVGVLSARNASYITPPPPRKHL-KVAGPDRLFTMAEARSLFANSGTGAP---SALPPPVLTQPFSALAP-----APVPAPPVA---PQVAAYQNRTATAPG 351
BLAST of mRNA_P-littoralis_Contig1550.1.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE) HSP 1 Score: 249 bits (636), Expect = 1.090e-68 Identity = 128/276 (46.38%), Postives = 180/276 (65.22%), Query Frame = 2
Query: 434 IRKRLVGSLTPPFYGGPSPGTLTESNCAVFLEEKMRSTLRTLESGVAQLEKDELVDGGWSTVPDEHTPRRIEMLSEFVQGHLATRDAMDSDEPLEVWSLTGDVQIKRREQVTCTDYLRLLVREQALTSGSRELAETALDAIVRQPNEAWAAAAARVVKVFRATFANADRPCVSETQFFWRFVTEADMRHLFSRLTDVLMPNPFERNGVSSLLLQHTQRVSESMRKLRLELHDPTGVAMVSRGVETQKLFKEFAGVLSAQSVSCRQPARKGVSKQVG 1261
+RKR+ G P YGGPS G LT +N AV L++K+ S LR +ESG +LE D VDG + T DE TPRR+E++S+ VQ +L+ + + + + V+ +TG+V K +VT TD+LRL VRE ALT G+ ELA +A A+ P E W+AAAARV+ VFRAT A+ +RP ++E FWRF T + L+ R+ +VL+PNPF+RNGVS++L + + S+ LR+E HDP G AM RGV +KLF++F GVLSA++ S P + +G
Sbjct: 1 MRKRIAGDKPCPVYGGPSSGPLTIANSAVMLQDKVMSVLRNVESGKMRLEPDVYVDGRYVTFADEFTPRRVELISDLVQDYLSVSQQIANSDHVHVYLITGEVITKPHREVTATDWLRLYVREHALTGGAAELARSAFSALTLTPGEGWSAAAARVLSVFRATRADPERPYMTEQALFWRFATPVALIELYDRVVEVLLPNPFDRNGVSAILHETAYETTSSLGPLRMEWHDPLGEAMARRGVTAEKLFRKFVGVLSARNASYITPPPRDADASLG 276
BLAST of mRNA_P-littoralis_Contig1550.1.1 vs. uniprot
Match: A0A6H5KZY5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY5_9PHAE) HSP 1 Score: 214 bits (545), Expect = 1.100e-56 Identity = 123/298 (41.28%), Postives = 175/298 (58.72%), Query Frame = 2
Query: 332 RRTSYERRERLAFEGNSSKPPGFSDATSAKGFERIR--KRLVGSLTPPFYGGPSPGTLTESNCAVFLEEKMRSTLRTLESGVAQLEKDELVDGGWSTVPDEHTPRRIEMLSEFVQGHLATRDAMDSDEPLEVWSLTGDVQIKRREQVTCTDYLRLLVREQALTSGSRELAETALDAIVRQPNEAWAAAAARVVKVFRATFANADRPCVSETQFFWRFVTEADMRHLFSRLTDVLMPNPFERNGVSSLLLQHTQRVSESMRKLRLELHDPTGVAMVSRGVETQKLFKEFAGVLSAQSVS 1219
R+ S R LA G P + + + + +R G P YGGPS G LT +N AV L++K+ S LR +ESG +LE D VDG + TV DE TPRR+E++S+ VQ + + + + V+ + G+V K +VT TD+LRL VRE ALT + ELA +A A+ P + W+AAAAR++ VFRAT A+ +RP ++E FWRF T + L+ R+ +VL+P PF+RNGVS+ L + S+ LR+E HD AM RGV +K F++F GVLSA++ S
Sbjct: 148 RKQSRRRSHTLAPSGYGGAVPSYEEWPAVRDPRALRWADSGRGDQPCPVYGGPSSGPLTIANSAVMLQDKVMSVLRNVESGKMRLEPDVYVDGRFVTVADEFTPRRVELISDLVQEYSPVSQQIAKTDHVHVYLINGEVITKPHREVTATDWLRLDVREHALTGVAAELACSAFSALTLTPEDGWSAAAARILSVFRATRADPERPYMTEQALFWRFATPVALIELYDRVVEVLLPTPFDRNGVSAKLHGIAYETTSSLGPLRMEWHDLLEEAMARRGVTAEKFFRKFVGVLSARNAS 445
BLAST of mRNA_P-littoralis_Contig1550.1.1 vs. uniprot
Match: A0A6H5K8L9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8L9_9PHAE) HSP 1 Score: 204 bits (518), Expect = 2.520e-56 Identity = 135/335 (40.30%), Postives = 191/335 (57.01%), Query Frame = 2
Query: 542 STLRTLESGVAQLEKDELVDGGWSTVPDEHTPRRIEMLSEFVQGHLATRDAMDSDEPLEVWSLTGDVQIKRREQVTCTDYLRLLVREQALTSGSRELAETALDAIVRQPNEAWAAAAARVVKVFRATFANADRPCVSETQFFWRFVTEADMRHLFSRLTDVLMPNPFERNGVSSLLLQHTQRVSESMRKLRLELHDPTGVAMVSRGVETQKLFKEFAGVLSAQS------VSCRQPARKGVSKQVGSDNM----FSLQELSELFAS------KQSLAAFTAGRVAPMVRD-----TKVAAVAPLGYIHSVVPEPALELSHPRVAAFQNQVASTPG 1483
S LRTL+SGV LE D ++G W+T PD HT RR E+L++ + HL T + + S + ++V+ +TG+V R+ VT T +LRL+VRE ALT G+ E A AL A++ E+ AAARV+ FRAT + DRP ++E +FFWR+++ M LF R+T+VL+PNP +R GV+ LL + VS +++KLR E H P G M RG + LF+EF VLSA+S + R+P R G ++ + N S+ E +LF + S+ +G AP+ VAAVAP PE ++ VAAFQN ASTPG
Sbjct: 2 SVLRTLDSGVIALEPDVFLNGYWATQPDVHTGRRRELLTDLLHEHLLTHNQITSADTVQVYRITGEVVDTPRDSVTATHWLRLIVREHALTGGAVEYANAALQAMMLGTPESMPTAAARVLAAFRATLVDPDRPHITEQRFFWRYISAVQMIALFERVTEVLLPNPVDRAGVNGLLHERIHSVSTTLQKLRQESHHPMGDHMSHRGKVAESLFREFVAVLSARSKPYMTPTTPRKPTRAGGQDRLCAANPTPRHLSMPEYRQLFTADGLASYNSSIPLTVSGGSAPLRPPPPTWLNSVAAVAP----PVAAPESPSSVA---VAAFQNHKASTPG 329
BLAST of mRNA_P-littoralis_Contig1550.1.1 vs. uniprot
Match: A0A6H5JFF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFF6_9PHAE) HSP 1 Score: 201 bits (510), Expect = 5.300e-54 Identity = 112/247 (45.34%), Postives = 156/247 (63.16%), Query Frame = 2
Query: 473 YGGPSPGTLTESNCAVFLEEKMRSTLRTLESGVAQLEKDELVDGGWSTVPDEHTPRRIEMLSEFVQGHLATRDAMDSDEPLEVWSLTGDVQIKRREQVTCTDYLRLLVREQALTSGSRELAETALDAIVRQPNEAWAAAAARVVKVFRATFANADRPCVSETQFFWRFVTEADMRHLFSRLTDVLMPNPFERNGVSSLLLQHTQRVSESMRKLRLELHDPTGVAMVSRGVETQKLFKEFAGVLSAQS 1213
Y GP PG L+ +N AV L +K+ S LRTL+SGV LE D +G +T PD HT RR E+L++ + HL T + + S + L+V+ + G V R+ VT TD+LRL+VRE ALT G+ E A AL ++V E+ AAARV+ FRAT + DRP V+E +FFWR+++ M LF +T+VL+PNP + GV+ LL + T +S +++KLR E H+P G M R + LF EF VLSA+S
Sbjct: 148 YAGPGPGELSMNNRAVRLRQKVISVLRTLDSGVIALEPDVFPNGFRATQPDVHTGRRRELLTDLLHEHLLTHNRITSADSLQVYRIAGQVVDTPRDSVTATDWLRLIVREHALTGGAVEYAYAALQSMVLGTPESMPTAAARVLAAFRATLVDPDRPHVTEQRFFWRYISAVQMIALFEGVTEVLLPNPVDGAGVNGLLHERTHSISTTLQKLRQESHNPMGHHMRHRRTVAEGLFHEFVAVLSARS 394
BLAST of mRNA_P-littoralis_Contig1550.1.1 vs. uniprot
Match: A0A6H5KZ17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ17_9PHAE) HSP 1 Score: 176 bits (447), Expect = 3.500e-48 Identity = 106/266 (39.85%), Postives = 151/266 (56.77%), Query Frame = 2
Query: 416 AKGFERIRKRLVGSLTPPFYGGPSPGTLTESNCAVFLEEKMRSTLRTLESGVAQLEKDELVDGGWSTVPDEHTPRRIEMLSEFVQGHLATRDAMDSDEPLEVWSLTGDVQIKRREQVTCTDYLRLLVREQALTSGSRELAETALDAIVRQPNEAWAAAAARVVKVFRATFANADRPCVSETQFFWRFVTEADMRHLFSRLTDVLMPNPFERNGVSSLLLQHTQRVSESMRKLRLELHDPTGVAMVSRGVETQKLFKEFAGVLSAQS 1213
+K ER RKR+ ++ P Y GP PG L+ +NCAV L++K+ S LRTL+SGV LE D ++G W+T PD HT RR E+L++ + HL T + + S + ++V+ TG+V R+ T TD+LRL+VRE ALT G+ E A +L A+V E+ AAAR++ LF R+T+VL+PNP +R GV+ LL + VS +++K R E H P G M RG + LF+E VLSA+S
Sbjct: 2 SKVIERARKRVTDKVSGPVYAGPGPGELSINNCAVRLQQKVMSILRTLDSGVIALEPDVFLNGYWATQPDVHTRRR-ELLTDLLHEHLLTHNQITSADTVQVYRKTGEVVDTPRDSATATDWLRLIVREHALTGGAVEYANASLQAMVLGAPESMPTAAARMIA-------------------------------LFERVTEVLLPNPVDRAGVNGLLHERIHSVSTTLQKWRQESHHPMGDHMSHRGKVAEGLFRESVAVLSARS 235
BLAST of mRNA_P-littoralis_Contig1550.1.1 vs. uniprot
Match: A0A6H5J7F8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7F8_9PHAE) HSP 1 Score: 144 bits (362), Expect = 7.280e-33 Identity = 80/190 (42.11%), Postives = 118/190 (62.11%), Query Frame = 2
Query: 524 LEEKMRSTLRTLESGVAQLEKDELVDGGWSTVPDEHTPRRIEMLSEFVQGHLATRDAMDSDEPLEVWSLTGDVQIKRREQVTCTDYLRLLVREQALTSGSRELAETALDAIVRQPNEAWAAAAARVVKVFRATFANADRPCVSETQFFWRFVTEADMRHLFSRLTDVLMPNPFERNGVSSLLLQHTQRVS 1093
L++K+ S LRT++SG+ +LE D V+G + TV D+ TPRR+E+LS+ ++ + + + + L+G+V K EQ T TD+LRL VREQAL G+ ELA AL A+ P E W++ AA VV F A A+ +RP ++E FW FVT M L+ VL+PN F+RNGVS++L + + R +
Sbjct: 2 LQDKVMSVLRTVDSGMMRLEPDVYVNGQYITVADDLTPRRVELLSDLAHEFMSVSQPIANAHTVNIHLLSGEVIAKPHEQATTTDWLRLYVREQALMGGA-ELARAALAAMTLSPGEGWSSRAASVVSAFGAARAHPERPYITEQALFWCFVTPVQMTALYDCEGQVLLPNAFDRNGVSAILHEKSYRTN 190 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1550.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1550.1.1 >prot_P-littoralis_Contig1550.1.1 ID=prot_P-littoralis_Contig1550.1.1|Name=mRNA_P-littoralis_Contig1550.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=493bp MSGRRFAARNNSQRVQPVHGHYGPAPARENRGRRANRGDSRDRPRRQGDAback to top mRNA from alignment at P-littoralis_Contig1550:7281..8763- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1550.1.1 ID=mRNA_P-littoralis_Contig1550.1.1|Name=mRNA_P-littoralis_Contig1550.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1483bp|location=Sequence derived from alignment at P-littoralis_Contig1550:7281..8763- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1550:7281..8763- >mRNA_P-littoralis_Contig1550.1.1 ID=mRNA_P-littoralis_Contig1550.1.1|Name=mRNA_P-littoralis_Contig1550.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1479bp|location=Sequence derived from alignment at P-littoralis_Contig1550:7281..8763- (Pylaiella littoralis U1_48)back to top |