prot_P-littoralis_Contig155.94.3 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig155.94.3
Unique Nameprot_P-littoralis_Contig155.94.3
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length364
Homology
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BLAST of mRNA_P-littoralis_Contig155.94.3 vs. uniprot
Match: A0A6H5JM01_9PHAE (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM01_9PHAE)

HSP 1 Score: 394 bits (1013), Expect = 1.810e-132
Identity = 234/332 (70.48%), Postives = 262/332 (78.92%), Query Frame = 0 
Query:    1 MAFLLESQVPLAALEPSRQRLLLSVIEEYHGPIVSTVAEVLLRADRTTLAELTRLVQRDQGIMGVSRAGKTRTKVTTADVKESLLIMTQHNMVAAEMPTEKEMRRARPNGSG-PGNVRMHYTLLPLEALVRTRGPLFHSHASATFSKVAGLIVDCFLRHGRRTLPDVKKELLSKAQEAARTREALANFDEDDSDGAEGAACSEVTAESIQKRFEELVMGKYIDKVPKLDLVNPTVGPEKATKPSMTFGAVSAGVGGGNKGAKGGGGAAGPNVKSKELAARQQKGAAQANARKRRILGHDSNGGGKGTDGGQGDSDSGDDQLPVEMRNMVNSI 331
            MAFLLESQ+PL ALE SR++L+LSVIEEYHGPIVSTVAEVL+RA+RTTLAELTRLV RDQGIMGVSRAGKTRTKVT A+VKESLLIMTQHNMVAA MPTEKEMR+AR + SG   N+R+HYTLLPLE LVRTRGP FHSHA+ TFSKVAGL+VDCFLRHGRRTLPDVK+ELL +  EAAR R+ALAN  ED           EVT+ESIQK FEELVM KYIDKVPKLDLV PTV PEKA KPSMTFGA +      +KG K    A G N ++KELA RQQKGAAQ +ARKRR+LG DSN  G               +LPVEMR++V+S+
Sbjct:    1 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRAERTTLAELTRLVLRDQGIMGVSRAGKTRTKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSGRSSNIRLHYTLLPLEVLVRTRGPQFHSHAAKTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKALAN-PEDXXXXXXXDNVQEVTSESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPADND---SKG-KSASAANGQNGRNKELAERQQKGAAQRSARKRRMLGQDSNSNGVDGXXXXXXXXXXXXELPVEMRSLVSSM 327
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BLAST of mRNA_P-littoralis_Contig155.94.3 vs. uniprot
Match: D7FMS5_ECTSI (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS5_ECTSI)

HSP 1 Score: 375 bits (962), Expect = 9.700e-127
Identity = 220/300 (73.33%), Postives = 240/300 (80.00%), Query Frame = 0 
Query:    1 MAFLLESQVPLAALEPSRQRLLLSVIEEYHGPIVSTVAEVLLRADRTTLAELTRLVQRDQGIMGVSRAGKTRTKVTTADVKESLLIMTQHNMVAAEMPTEKEMRRARPNGSG-PGNVRMHYTLLPLEALVRTRGPLFHSHASATFSKVAGLIVDCFLRHGRRTLPDVKKELLSKAQEAARTREALANFDEDDSDGAEGAACSEVTAESIQKRFEELVMGKYIDKVPKLDLVNPTVGPEKATKPSMTFGAVSAGVGGGNKGAKGGGG---AAGPNVKSKELAARQQKGAAQANARKRRILG 296
            MAFLLESQ+PL ALE SR++L+LSVIEEYHGPIVSTVAEVL+RADRTTLAELTRLV RDQGIMGVSRAGKT TKVT A+VKESLLIMTQHNMVAA MPTEKEMR+AR + SG  GN+R+HYTLLPLE LVRTRGP FHSHA+ TFSKVAGL+VDCFLRHGRRTLPDVK+ELL +  EAAR R+ALAN  ED           EVT ESIQK FEELVM KYIDKVPKLDLV PTV PEKA KPSMTFGA +                  A G N ++KELA RQQKGAAQ +ARKRR+LG
Sbjct:    1 MAFLLESQMPLVALESSRRKLVLSVIEEYHGPIVSTVAEVLMRADRTTLAELTRLVLRDQGIMGVSRAGKTITKVTAANVKESLLIMTQHNMVAAAMPTEKEMRKARASSSGRSGNIRLHYTLLPLEVLVRTRGPQFHSHAARTFSKVAGLVVDCFLRHGRRTLPDVKEELLRREGEAARARKALAN-PEDXXXXXXXDHVQEVTPESIQKSFEELVMKKYIDKVPKLDLVTPTVEPEKAKKPSMTFGAPAGSXXXXXXXXXXXXXXXXANGQNGRNKELAERQQKGAAQTSARKRRMLG 299
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig155.94.3 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JM01_9PHAE1.810e-13270.48DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
D7FMS5_ECTSI9.700e-12773.33DNA-directed RNA polymerase III subunit RPC3 n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 126..231
e-value: 2.6E-8
score: 35.7
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 16..104
e-value: 1.3E-12
score: 49.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 260..364
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 347..364
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 328..342
IPR039748DNA-directed RNA polymerase III subunit RPC3PANTHERPTHR12949RNA POLYMERASE III DNA DIRECTED -RELATEDcoord: 20..307

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig155contigP-littoralis_Contig155:454252..461785 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig155.94.3mRNA_P-littoralis_Contig155.94.3Pylaiella littoralis U1_48mRNAP-littoralis_Contig155 450942..461785 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig155.94.3 ID=prot_P-littoralis_Contig155.94.3|Name=mRNA_P-littoralis_Contig155.94.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=364bp
MAFLLESQVPLAALEPSRQRLLLSVIEEYHGPIVSTVAEVLLRADRTTLA
ELTRLVQRDQGIMGVSRAGKTRTKVTTADVKESLLIMTQHNMVAAEMPTE
KEMRRARPNGSGPGNVRMHYTLLPLEALVRTRGPLFHSHASATFSKVAGL
IVDCFLRHGRRTLPDVKKELLSKAQEAARTREALANFDEDDSDGAEGAAC
SEVTAESIQKRFEELVMGKYIDKVPKLDLVNPTVGPEKATKPSMTFGAVS
AGVGGGNKGAKGGGGAAGPNVKSKELAARQQKGAAQANARKRRILGHDSN
GGGKGTDGGQGDSDSGDDQLPVEMRNMVNSIGGSSGSGGGGSADGNNRPA
KRKKTANGEVSGRT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR039748RPC3