mRNA_P-littoralis_Contig155.41.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig155.41.1
Unique NamemRNA_P-littoralis_Contig155.41.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig155.41.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig155contigP-littoralis_Contig155:133035..133361 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size328
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789739.9207-UTR-P-littoralis_Contig155:133034..1330611680789739.9207-UTR-P-littoralis_Contig155:133034..133061Pylaiella littoralis U1_48UTRP-littoralis_Contig155 133035..133061 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789739.9295309-CDS-P-littoralis_Contig155:133061..1333611680789739.9295309-CDS-P-littoralis_Contig155:133061..133361Pylaiella littoralis U1_48CDSP-littoralis_Contig155 133062..133361 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig155.41.1prot_P-littoralis_Contig155.41.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig155 133062..133361 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig155.41.1

>prot_P-littoralis_Contig155.41.1 ID=prot_P-littoralis_Contig155.41.1|Name=mRNA_P-littoralis_Contig155.41.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MPEGSDAGVGNNELAQQLIAMLEAQQKAQQEVKAKLTERIESLEIRSPAR
AAEVVQQGESPGSGEAAPGVQQGRHAGAPLRVLVPPPSAVGSTEPLRVGQ
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mRNA from alignment at P-littoralis_Contig155:133035..133361+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig155.41.1 ID=mRNA_P-littoralis_Contig155.41.1|Name=mRNA_P-littoralis_Contig155.41.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=327bp|location=Sequence derived from alignment at P-littoralis_Contig155:133035..133361+ (Pylaiella littoralis U1_48)
GCGCGGAGGAGCCCATTCGCAACGGCGATGCCTGAAGGATCAGATGCGGG
TGTGGGAAACAACGAGCTGGCTCAACAACTGATCGCGATGCTTGAAGCGC
AGCAAAAGGCACAGCAAGAGGTGAAGGCAAAGCTGACGGAGAGAATAGAG
AGCCTGGAGATTAGGTCGCCAGCGAGGGCGGCGGAGGTTGTACAACAAGG
AGAGTCACCAGGGAGCGGCGAGGCCGCTCCGGGCGTACAGCAGGGACGCC
ACGCAGGGGCGCCGTTGCGCGTCCTGGTACCCCCGCCCAGTGCGGTTGGA
TCGACGGAACCCCTTCGAGTCGGACAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig155:133035..133361+

>mRNA_P-littoralis_Contig155.41.1 ID=mRNA_P-littoralis_Contig155.41.1|Name=mRNA_P-littoralis_Contig155.41.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig155:133035..133361+ (Pylaiella littoralis U1_48)
ATGCCTGAAGGATCAGATGCGGGTGTGGGAAACAACGAGCTGGCTCAACA
ACTGATCGCGATGCTTGAAGCGCAGCAAAAGGCACAGCAAGAGGTGAAGG
CAAAGCTGACGGAGAGAATAGAGAGCCTGGAGATTAGGTCGCCAGCGAGG
GCGGCGGAGGTTGTACAACAAGGAGAGTCACCAGGGAGCGGCGAGGCCGC
TCCGGGCGTACAGCAGGGACGCCACGCAGGGGCGCCGTTGCGCGTCCTGG
TACCCCCGCCCAGTGCGGTTGGATCGACGGAACCCCTTCGAGTCGGACAG
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