mRNA_P-littoralis_Contig155.31.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig155.31.1
Unique NamemRNA_P-littoralis_Contig155.31.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig155.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig155contigP-littoralis_Contig155:74814..78518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1645
Hectar predicted targeting categoryother localisation
Exons2
Cds size846
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789739.8604264-UTR-P-littoralis_Contig155:74813..750771680789739.8604264-UTR-P-littoralis_Contig155:74813..75077Pylaiella littoralis U1_48UTRP-littoralis_Contig155 74814..75077 +
1680789739.8702526-UTR-P-littoralis_Contig155:77137..771661680789739.8702526-UTR-P-littoralis_Contig155:77137..77166Pylaiella littoralis U1_48UTRP-littoralis_Contig155 77138..77166 +
1680789739.890162-UTR-P-littoralis_Contig155:78012..785181680789739.890162-UTR-P-littoralis_Contig155:78012..78518Pylaiella littoralis U1_48UTRP-littoralis_Contig155 78013..78518 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789739.879462-CDS-P-littoralis_Contig155:77166..780121680789739.879462-CDS-P-littoralis_Contig155:77166..78012Pylaiella littoralis U1_48CDSP-littoralis_Contig155 77167..78012 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig155.31.1prot_P-littoralis_Contig155.31.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig155 77167..78012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig155.31.1

>prot_P-littoralis_Contig155.31.1 ID=prot_P-littoralis_Contig155.31.1|Name=mRNA_P-littoralis_Contig155.31.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=282bp
MKSKITAVVSKAIAAARAEIWGDDQQCSPKPAATAVAPGRDRDVEDLFSK
LSHVKEGLEIVLARVAYLEQSIHDKEKHLGVGPSDRLIGPNRLKRGKRRD
EVLAERAKELWGEEEEEEAGEGENEAICVIKAVKLVKVNVIKGAEKDKVG
RGEGEEEGRETEEGSHGKEVEHEIQTAESATSQQQGFPDKKRRGKRGGGG
GAKMTTNEAGERDEGSEGGCGSARGGDGGDRAEVVEASSKREGPSFLILL
KLYPVLLSWLCVNLFIWQRNKPQEGGHAAMG*
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mRNA from alignment at P-littoralis_Contig155:74814..78518+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig155.31.1 ID=mRNA_P-littoralis_Contig155.31.1|Name=mRNA_P-littoralis_Contig155.31.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3705bp|location=Sequence derived from alignment at P-littoralis_Contig155:74814..78518+ (Pylaiella littoralis U1_48)
ATCATTCATGCACAGAAGCAGAGGAATAGAGGCAGAGAAGGAAGGAGCCG
CATCAAAGCCCACACGGTGTGGGAAGCGCGGTGTGGGGGCGGTGTGTGGT
TCTTGCTTCATGTGCAGGAGCGCGGGGAGCAAGAGGACGGTAGGGGCTGT
GGCTGCTGCCTCTCACGATCAACAGATCGCGCGCGATTTTTGAAGACTTT
CCGATCGTTGGCCTGCCGTCTGGAGACTTTGGCCGAGCTTCGAAGCAGAG
ACACTTTCGATAAGGTGTGCGGTACTTGCTATGTGCGCTTGTAGAGCAAG
CCCGACACTTGTTGTTCAGTCACGGCACAGAAGCCCTGAGAACAAGAGTG
CCCCGTGAAACAAATACGAAGCTGCTGTCGACAGCAATAATCATTACCAG
GTATTTCTAAAATTACAAAATTACCCCCAAGTTTTGCTGATGATGGTGGG
GGGGGTGCGCACACGACCATGCCAGGTATACCGGTGCAGCAGTGTACGAG
GGAGAGGTGACAGCAGTGTAGTAGCAGTGGCTTCCGAAATGGGTGAAAGT
CAAAGGGTACCACACCTCAACAGCCATTACTGCGGTTCACAGTCCGGGTC
GGTAGCCTTCACGCGGGATAGCCCCCCTCTCTTAATTTAAGCCTAAAAAT
TTGAATCCAGTCGAAATTCAAGTCAGAACAGCCAACTGCTGTATAGATAA
GGCTCAAACATGGCAAAACGTCCCAATCTTAGTGTTAATATCAGCAGAGG
ATACCATGTAGCAGGTGCGGGTGTGTGGGCACGTTCAGATCTCCTGCTGG
TGCGGAGATACCAAAGGCTACAGCAGCAGTGGGTAGAAAAGTCCGCAAGC
TGAACCGAATCCAAGGGCTATCGCTACTTCTGTGCTCCGCCACAGACCCC
AACCTCCTGAAGTGCGGGTCATCCGAGGTAGTGGCAAAGCTACTGCTGTT
TACCCATTGCTTGAGAGGTTGGGGTCTGCGGCGGCGAGTACAGCAGTGGC
ACACCGTTGGTTTTGGAACAGTTTGCGGAGTTCTTGACCTACTGCTGTGG
CCTTCGATATCTCTGCGCACCAGCAATAGATCTAAACGTGCCGACGCATA
GGTAACTGCTACGTCGTGCCCTCTACTGGTGCAAACGCTAAGGTCGGGTC
TAACACTAGGGTGGGAACTCCTTGCACGACAGAGACCTCATTTGAGCCTT
ATCTAAATAAACTCGTTTGGTTTTATTTTGGGTTGTGAGTGGAATTTCAT
ATTGATTTAATATTAGGGGAGAAACAAATGTGGAGGTGACGCGCTGACAT
AACTGTGAAGATGGTGCACCTAGCGCTGCTCTCCTTGAGACCAAATATAC
TTTTTCGTGCCCAACGTTTCGCTGCTGGTATGATCGATTTTCTGTGTGAT
TGCTGGTTGCTCTCTCGATCTACTTCACAACGCCCAAAATATCGACAAAT
ATTTGGGGAGGTACTCCGCAAACCCCGAAGTACGACAAAGTGGTGCGTTG
ATGTCTGGCACGAAATAACTGGCGTATCATAGTACAGATGAACAGGAGAA
CGCCTCATGCCGACAATCCTTTTTTCTGGGGGGAACGAACGCGGATACTG
TACATAGAGATGCGAAAACACCTTAACTCGTTCGCTTTTGTTCATGGCTC
GTGTACACGTTCACATAAAAAGTTGGCTTCTTGTTCATTGCTCGTGTAGT
TACATGAAGGCTACGCGCTGTATCCCCTCCCCTCTGCCTGCTATTGTTGA
AATTAGTACGTTTTATGTAATTCAAGCCGCTGAGCTCCGCACGAGAACCA
CGAAGAGCCAGGCGGACATGAAAGCAAAAACATATTATGATAAAAAATGC
ATGCCACATGAATAATTAGACCCAGGTATATGATGAAAACAGCTACGTAG
ACTGTGTACACCTCCACCTCTGATTGTACTGCAGAGCTGCTTCTATGCAC
GGTTTCTGATTCATGCACCACGCGTACAGCACATCAGTTCAAACAACCCG
GAGGATCTTCAAAACTCGATGGCTCTGCAACAACGTATTCATGGATCAGT
CAGCGCTGAAAAACGTTTTTCGAAAAGATCGCGTCGAAGTCTTGTAGAAA
AATACGCGTCGTTGAATGGTGGCACCTCATTATCAGCACCCTCGTCGCTG
GAGAGGAATCGAGCTTTGGCTATCGACCAAAGGGTTCTCTGAGTGGGCAC
CATGTTTGAGGTGTGCACTGAGGCCACGAGAGGCGGCTTTCTCCCCCCAC
TGGCAAACTAGATAATCATACCGCTTATTTTGCTGCTATACTCCTCGCTC
GTTCACCTGCCTGTACACAAACAGCAAAACACAACCAACCAAAACATTTC
ACGATGAAGAGCAAGATCACTGCTGTCGTTTCCAAGGCCATCGCAGCCGC
CAGGGCGGAGATTTGGGGCGACGACCAGCAATGTTCACCCAAGCCCGCCG
CCACTGCTGTCGCACCCGGGCGGGATCGCGACGTTGAAGATCTATTTTCC
AAGCTGAGCCACGTCAAGGAGGGGCTTGAAATTGTCCTGGCACGTGTGGC
CTACCTAGAGCAGAGTATTCATGACAAAGAGAAGCATCTCGGAGTGGGGC
CGAGCGACAGGCTGATAGGCCCCAACAGACTCAAGAGAGGAAAACGGCGC
GATGAAGTGTTAGCGGAGCGAGCTAAGGAGCTGTGGGGAGAAGAGGAGGA
GGAGGAGGCAGGGGAGGGAGAGAACGAGGCAATCTGTGTGATCAAGGCGG
TGAAACTCGTCAAGGTCAATGTCATCAAAGGTGCCGAGAAGGATAAGGTA
GGGAGAGGGGAAGGAGAGGAAGAGGGGAGAGAGACGGAAGAGGGGAGCCA
TGGTAAGGAGGTGGAGCATGAAATACAAACCGCGGAGTCAGCCACGAGCC
AGCAACAAGGGTTTCCTGACAAAAAGAGGAGGGGCAAGAGAGGAGGAGGG
GGCGGCGCAAAAATGACGACGAATGAAGCCGGCGAGCGGGACGAGGGTAG
CGAGGGCGGTTGCGGGTCAGCGAGGGGCGGCGACGGCGGAGATAGAGCAG
AAGTCGTGGAAGCGTCATCCAAGAGGGAGGGGCCGAGCTTCCTTATTCTG
CTGAAGCTCTATCCTGTGCTGCTGTCATGGCTTTGCGTAAACCTATTCAT
TTGGCAACGCAACAAACCGCAGGAAGGTGGACATGCGGCAATGGGATAGA
CGACGCTGCTTGAATGTACAGTAATCTAAATATTGTGATGTCTCCCTGTT
CGTTTGTAAAGCTACATCAGAACGTGCTCGATATGCTGCGTCTAGATTAT
GTTGGGACAACAATTTTTAGGACTGAATGTGTTCATTTTTAGCTTTTTTC
GGACATTTTGCATTTGATCGTATATGTTCCGTGCGTGGTCATCGTGAGCT
TAAGTGTTTTGTAGCACCCGAAAGACCAGAGGAAGGGCGCTTCTTTTAGC
CGATGCTAGTGTCGTTTGTCGTCCTTCGCTCTCAACTAGGCGTGCTGTTG
AGTTGAAACACCAAGCTTTCGTGGCATTGCTGCGGCTGCTGATGTGTCTC
TTGCTCGTGTGTGTGGTCTGCGCGTGCATCCTGTAAAACGAATGGAGTTA
TGACATGACACGAGAACCCAGAAGCGAAAAACACAGGGCAGGCGGCGGAT
TACATGCGCCATCATCAAGTTTCCCACAACGGAAGCCGGCAAGTTTTGGC
CTCAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig155:74814..78518+

>mRNA_P-littoralis_Contig155.31.1 ID=mRNA_P-littoralis_Contig155.31.1|Name=mRNA_P-littoralis_Contig155.31.1|organism=Pylaiella littoralis U1_48|type=CDS|length=846bp|location=Sequence derived from alignment at P-littoralis_Contig155:74814..78518+ (Pylaiella littoralis U1_48)
ATGAAGAGCAAGATCACTGCTGTCGTTTCCAAGGCCATCGCAGCCGCCAG
GGCGGAGATTTGGGGCGACGACCAGCAATGTTCACCCAAGCCCGCCGCCA
CTGCTGTCGCACCCGGGCGGGATCGCGACGTTGAAGATCTATTTTCCAAG
CTGAGCCACGTCAAGGAGGGGCTTGAAATTGTCCTGGCACGTGTGGCCTA
CCTAGAGCAGAGTATTCATGACAAAGAGAAGCATCTCGGAGTGGGGCCGA
GCGACAGGCTGATAGGCCCCAACAGACTCAAGAGAGGAAAACGGCGCGAT
GAAGTGTTAGCGGAGCGAGCTAAGGAGCTGTGGGGAGAAGAGGAGGAGGA
GGAGGCAGGGGAGGGAGAGAACGAGGCAATCTGTGTGATCAAGGCGGTGA
AACTCGTCAAGGTCAATGTCATCAAAGGTGCCGAGAAGGATAAGGTAGGG
AGAGGGGAAGGAGAGGAAGAGGGGAGAGAGACGGAAGAGGGGAGCCATGG
TAAGGAGGTGGAGCATGAAATACAAACCGCGGAGTCAGCCACGAGCCAGC
AACAAGGGTTTCCTGACAAAAAGAGGAGGGGCAAGAGAGGAGGAGGGGGC
GGCGCAAAAATGACGACGAATGAAGCCGGCGAGCGGGACGAGGGTAGCGA
GGGCGGTTGCGGGTCAGCGAGGGGCGGCGACGGCGGAGATAGAGCAGAAG
TCGTGGAAGCGTCATCCAAGAGGGAGGGGCCGAGCTTCCTTATTCTGCTG
AAGCTCTATCCTGTGCTGCTGTCATGGCTTTGCGTAAACCTATTCATTTG
GCAACGCAACAAACCGCAGGAAGGTGGACATGCGGCAATGGGATAG
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