mRNA_P-littoralis_Contig1549.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1549.4.1
Unique NamemRNA_P-littoralis_Contig1549.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1549.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1549contigP-littoralis_Contig1549:8024..8624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size601
Hectar predicted targeting categorysignal peptide
Exons1
Cds size357
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789739.5943148-UTR-P-littoralis_Contig1549:8023..81151680789739.5943148-UTR-P-littoralis_Contig1549:8023..8115Pylaiella littoralis U1_48UTRP-littoralis_Contig1549 8024..8115 +
1680789739.6179526-UTR-P-littoralis_Contig1549:8472..86241680789739.6179526-UTR-P-littoralis_Contig1549:8472..8624Pylaiella littoralis U1_48UTRP-littoralis_Contig1549 8473..8624 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789739.6087923-CDS-P-littoralis_Contig1549:8115..84721680789739.6087923-CDS-P-littoralis_Contig1549:8115..8472Pylaiella littoralis U1_48CDSP-littoralis_Contig1549 8116..8472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1549.4.1prot_P-littoralis_Contig1549.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1549 8116..8472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1549.4.1

>prot_P-littoralis_Contig1549.4.1 ID=prot_P-littoralis_Contig1549.4.1|Name=mRNA_P-littoralis_Contig1549.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
MLAVSSCQRFGGAASVCTTFALCAFWAVGQCFWVFCLELFGPKGGALDFF
VFCVFLQLMRGDYTEICIFCLCFFLWVGGRGQLSSNLCISCCSWGKRCFC
TPRHDGWRNGRRVHRHRL*
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mRNA from alignment at P-littoralis_Contig1549:8024..8624+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1549.4.1 ID=mRNA_P-littoralis_Contig1549.4.1|Name=mRNA_P-littoralis_Contig1549.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=601bp|location=Sequence derived from alignment at P-littoralis_Contig1549:8024..8624+ (Pylaiella littoralis U1_48)
TGGCATGTTGAGATTCTTGTCTCTCTCCCCTGGAAATAGTCGTAAGAGGG
CAGCTGTACGTCTTTTTGCCGACGCAAACTTGACTATGTCACATGCTTGC
AGTGAGTTCATGCCAGAGGTTTGGTGGCGCCGCCTCGGTGTGCACGACAT
TTGCTTTGTGTGCCTTTTGGGCAGTTGGACAATGTTTTTGGGTGTTTTGT
TTGGAGTTATTTGGTCCCAAAGGAGGGGCGCTTGATTTTTTTGTGTTCTG
CGTGTTTTTGCAGTTGATGAGGGGAGACTATACTGAGATATGTATTTTTT
GTTTGTGTTTTTTTTTATGGGTGGGGGGACGGGGGCAATTGTCATCAAAT
TTGTGTATATCTTGCTGCAGTTGGGGTAAACGTTGTTTCTGCACACCAAG
GCATGACGGGTGGCGCAATGGTAGACGGGTACACCGGCACCGTTTGTAAT
AACTTGCCTGGGCTCGACCGCATGTAGTATATCTCTGCAATACGGCAAGT
GAACGTTGTTTTTCTCCGTATTTTTTACATAAAAAAAAGCAATCTGATGA
TATTATGTCATACATCAAAACGGCACGAACTCGGATCGTGCACGACGGCA
C
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Coding sequence (CDS) from alignment at P-littoralis_Contig1549:8024..8624+

>mRNA_P-littoralis_Contig1549.4.1 ID=mRNA_P-littoralis_Contig1549.4.1|Name=mRNA_P-littoralis_Contig1549.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig1549:8024..8624+ (Pylaiella littoralis U1_48)
ATGCTTGCAGTGAGTTCATGCCAGAGGTTTGGTGGCGCCGCCTCGGTGTG
CACGACATTTGCTTTGTGTGCCTTTTGGGCAGTTGGACAATGTTTTTGGG
TGTTTTGTTTGGAGTTATTTGGTCCCAAAGGAGGGGCGCTTGATTTTTTT
GTGTTCTGCGTGTTTTTGCAGTTGATGAGGGGAGACTATACTGAGATATG
TATTTTTTGTTTGTGTTTTTTTTTATGGGTGGGGGGACGGGGGCAATTGT
CATCAAATTTGTGTATATCTTGCTGCAGTTGGGGTAAACGTTGTTTCTGC
ACACCAAGGCATGACGGGTGGCGCAATGGTAGACGGGTACACCGGCACCG
TTTGTAA
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