mRNA_P-littoralis_Contig1544.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1544.5.1
Unique NamemRNA_P-littoralis_Contig1544.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1544.5.1 vs. uniprot
Match: O78800_PYLLI (Uncharacterized protein n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=O78800_PYLLI)

HSP 1 Score: 97.4 bits (241), Expect = 2.840e-24
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 3 
Query:  111 MNLETKSSPLQLVVNILYYSLISALSCLVVYVIFSGLNELMNSYYANRLSILEM 272
            MNLETKSSPLQLVVNILYYS ISALSCLVVYVIFSGLNELMNSYYANRLSILEM
Sbjct:    1 MNLETKSSPLQLVVNILYYSFISALSCLVVYVIFSGLNELMNSYYANRLSILEM 54
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BLAST of mRNA_P-littoralis_Contig1544.5.1 vs. uniprot
Match: O78799_PYLLI (Uncharacterized protein n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=O78799_PYLLI)

HSP 1 Score: 73.6 bits (179), Expect = 6.590e-14
Identity = 34/35 (97.14%), Postives = 35/35 (100.00%), Query Frame = 2 
Query:    2 GNVHANNSVKYIKMIFLDVNNEKCRVDSILPPEKL 106
            GNVHANNSVKYIKMIFLDVNN+KCRVDSILPPEKL
Sbjct:  199 GNVHANNSVKYIKMIFLDVNNKKCRVDSILPPEKL 233
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BLAST of mRNA_P-littoralis_Contig1544.5.1 vs. uniprot
Match: O78802_PYLLI (Uncharacterized protein n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=O78802_PYLLI)

HSP 1 Score: 65.5 bits (158), Expect = 6.820e-12
Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 2 
Query:    2 GNVHANNSVKYIKMIFLDVNNEKCRVDSILP 94
            GNVHANNSVKYIKMIFLDVNN+KCRVDSILP
Sbjct:   73 GNVHANNSVKYIKMIFLDVNNKKCRVDSILP 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1544.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
O78800_PYLLI2.840e-2498.15Uncharacterized protein n=1 Tax=Pylaiella littoral... [more]
O78799_PYLLI6.590e-1497.14Uncharacterized protein n=1 Tax=Pylaiella littoral... [more]
O78802_PYLLI6.820e-1296.77Uncharacterized protein n=1 Tax=Pylaiella littoral... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1544contigP-littoralis_Contig1544:6244..6515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size273
Hectar predicted targeting categorysignal anchor
Exons1
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789739.2869608-CDS-P-littoralis_Contig1544:6243..64051680789739.2869608-CDS-P-littoralis_Contig1544:6243..6405Pylaiella littoralis U1_48CDSP-littoralis_Contig1544 6244..6405 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789739.2995808-UTR-P-littoralis_Contig1544:6405..65151680789739.2995808-UTR-P-littoralis_Contig1544:6405..6515Pylaiella littoralis U1_48UTRP-littoralis_Contig1544 6406..6515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1544.5.1prot_P-littoralis_Contig1544.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1544 6244..6405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1544.5.1

>prot_P-littoralis_Contig1544.5.1 ID=prot_P-littoralis_Contig1544.5.1|Name=mRNA_P-littoralis_Contig1544.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=54bp
MNLETKSSPLQLVVNILYYSLISALSCLVVYVIFSGLNELMNSYYANRLS
ILEM
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mRNA from alignment at P-littoralis_Contig1544:6244..6515-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1544.5.1 ID=mRNA_P-littoralis_Contig1544.5.1|Name=mRNA_P-littoralis_Contig1544.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=272bp|location=Sequence derived from alignment at P-littoralis_Contig1544:6244..6515- (Pylaiella littoralis U1_48)
AGGAAATGTTCATGCCAACAACAGCGTTAAATATATAAAAATGATATTTC
TTGACGTGAATAATGAAAAATGCAGAGTAGATTCGATTCTTCCCCCAGAA
AAGCTATAAAATGAATTTAGAAACAAAATCATCCCCTTTACAACTAGTTG
TTAATATTTTGTATTATTCTCTTATTTCGGCTCTTAGTTGCTTGGTTGTT
TATGTGATATTTTCTGGTTTGAATGAGTTGATGAATTCGTATTATGCAAA
TCGTTTAAGTATTCTTGAGATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1544:6244..6515-

>mRNA_P-littoralis_Contig1544.5.1 ID=mRNA_P-littoralis_Contig1544.5.1|Name=mRNA_P-littoralis_Contig1544.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=162bp|location=Sequence derived from alignment at P-littoralis_Contig1544:6244..6515- (Pylaiella littoralis U1_48)
ATGAATTTAGAAACAAAATCATCCCCTTTACAACTAGTTGTTAATATTTT
GTATTATTCTCTTATTTCGGCTCTTAGTTGCTTGGTTGTTTATGTGATAT
TTTCTGGTTTGAATGAGTTGATGAATTCGTATTATGCAAATCGTTTAAGT
ATTCTTGAGATG
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