mRNA_P-littoralis_Contig1544.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1544.2.1
Unique NamemRNA_P-littoralis_Contig1544.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1544.2.1 vs. uniprot
Match: O78799_PYLLI (Uncharacterized protein n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=O78799_PYLLI)

HSP 1 Score: 417 bits (1073), Expect = 5.490e-142
Identity = 214/233 (91.85%), Postives = 224/233 (96.14%), Query Frame = 1 
Query:    1 MLFNYNTLSLTSSNFLFSSSVHSFNALRSLGTRTKRPKFQIDPWILDMFKNEEVMTPVTPTQPLTNYLMTTNGTSLTLFPRTESLLRTQREHHLNAIMKAIFTAGYSDVDFNKVIRVLKVVAVEFMTENSANDEPIRFMINFDHILSESELKKYQEFDYSDQDEVSPLLDADDLKELQVYPELRQLFETQIIGPKNGKGNVHANNSVKYIKMIFLDVNNEKCRVDSILPPEKL 699
            MLFNYNTLSLTSSNFLFSSSVHSFNALR LGTRTK+PKFQ+DP ILDMFKNEEVM PVT TQ LTNYLMTTN TSLTLFPRTE+LLRTQREHHLNAI+KAIFTAGY DVDFNKVIRVLKVVA+EFMTEN AND+PIRF INFDHILSESELKKYQEFDYSDQDEVSPLLDADDLKE++VYPELRQLFE+QIIGPKNGKGNVHANNSVKYIKMIFLDVNN+KCRVDSILPPEKL
Sbjct:    1 MLFNYNTLSLTSSNFLFSSSVHSFNALRYLGTRTKKPKFQMDPQILDMFKNEEVMNPVTTTQALTNYLMTTNETSLTLFPRTETLLRTQREHHLNAIVKAIFTAGYRDVDFNKVIRVLKVVAIEFMTENDANDDPIRFTINFDHILSESELKKYQEFDYSDQDEVSPLLDADDLKEIKVYPELRQLFESQIIGPKNGKGNVHANNSVKYIKMIFLDVNNKKCRVDSILPPEKL 233
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BLAST of mRNA_P-littoralis_Contig1544.2.1 vs. uniprot
Match: O78800_PYLLI (Uncharacterized protein n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=O78800_PYLLI)

HSP 1 Score: 214 bits (544), Expect = 4.090e-64
Identity = 111/118 (94.07%), Postives = 114/118 (96.61%), Query Frame = 2 
Query:  704 MNLETKSSPLQLVVNILYYSLISALSCLVVYVIFSGLNELMNSYYANRLSILEMEYKVKSFSTDVLSSVQNTFQNTIKP--TPEKQGWIAWLKPVWVSLATLSVRYLVSLCCHMLPGA 1051
            MNLETKSSPLQLVVNILYYS ISALSCLVVYVIFSGLNELMNSYYANRLSILEMEYKVKSFSTDVLSSVQNT Q+T+KP  TPEKQGWIAWLKPVWVSLATLSVRY+VSLCCHMLPGA
Sbjct:    1 MNLETKSSPLQLVVNILYYSFISALSCLVVYVIFSGLNELMNSYYANRLSILEMEYKVKSFSTDVLSSVQNTLQSTLKPSPTPEKQGWIAWLKPVWVSLATLSVRYIVSLCCHMLPGA 118
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BLAST of mRNA_P-littoralis_Contig1544.2.1 vs. uniprot
Match: O78801_PYLLI (Uncharacterized protein n=2 Tax=Pylaiella littoralis TaxID=2885 RepID=O78801_PYLLI)

HSP 1 Score: 169 bits (429), Expect = 1.110e-46
Identity = 91/135 (67.41%), Postives = 103/135 (76.30%), Query Frame = 2 
Query: 1049 ALFNMTLLGPCLKLIIHGPEGFFVEPLTPGEIQERFQFLSEAGQSLNNNCVERNQNITAAMNLIGVAMDDMRARIGALESGGSVDAIN-----LNRARTHEESMNEISRMLDGISGSDGGVFRDEENDTTGIFGD 1438
            +LFNMTLLGPCLKLIIHGPEGFFVEPLTPGEIQERFQFLSEAGQSLNNNCVERNQN T +   I  A++ MR +I  LESG S++ IN     L +ART EE  N++S +L GIS S G V  D  ND+TGIF D
Sbjct:   23 SLFNMTLLGPCLKLIIHGPEGFFVEPLTPGEIQERFQFLSEAGQSLNNNCVERNQNTTESFAAIATALELMRDKIRILESGRSINTINNGLGDLPQARTQEELDNQVSDLLSGISRSTGEVVPDAINDSTGIFDD 157
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BLAST of mRNA_P-littoralis_Contig1544.2.1 vs. uniprot
Match: O78802_PYLLI (Uncharacterized protein n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=O78802_PYLLI)

HSP 1 Score: 102 bits (253), Expect = 2.070e-22
Identity = 49/59 (83.05%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:  511 ADDLKELQVYPELRQLFETQIIGPKNGKGNVHANNSVKYIKMIFLDVNNEKCRVDSILP 687
             ++LK  +  PELRQLFE+QIIGPKNGKGNVHANNSVKYIKMIFLDVNN+KCRVDSILP
Sbjct:   45 VENLKNSKSTPELRQLFESQIIGPKNGKGNVHANNSVKYIKMIFLDVNNKKCRVDSILP 103
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1544.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
O78799_PYLLI5.490e-14291.85Uncharacterized protein n=1 Tax=Pylaiella littoral... [more]
O78800_PYLLI4.090e-6494.07Uncharacterized protein n=1 Tax=Pylaiella littoral... [more]
O78801_PYLLI1.110e-4667.41Uncharacterized protein n=2 Tax=Pylaiella littoral... [more]
O78802_PYLLI2.070e-2283.05Uncharacterized protein n=1 Tax=Pylaiella littoral... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1544contigP-littoralis_Contig1544:904..2515 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1612
Hectar predicted targeting categorymitochondrion
Exons1
Cds size702
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789739.243785-UTR-P-littoralis_Contig1544:903..18131680789739.243785-UTR-P-littoralis_Contig1544:903..1813Pylaiella littoralis U1_48UTRP-littoralis_Contig1544 904..1813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789739.259959-CDS-P-littoralis_Contig1544:1813..25151680789739.259959-CDS-P-littoralis_Contig1544:1813..2515Pylaiella littoralis U1_48CDSP-littoralis_Contig1544 1814..2515 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1544.2.1prot_P-littoralis_Contig1544.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1544 1814..2515 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1544.2.1

>prot_P-littoralis_Contig1544.2.1 ID=prot_P-littoralis_Contig1544.2.1|Name=mRNA_P-littoralis_Contig1544.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=234bp
MLFNYNTLSLTSSNFLFSSSVHSFNALRSLGTRTKRPKFQIDPWILDMFK
NEEVMTPVTPTQPLTNYLMTTNGTSLTLFPRTESLLRTQREHHLNAIMKA
IFTAGYSDVDFNKVIRVLKVVAVEFMTENSANDEPIRFMINFDHILSESE
LKKYQEFDYSDQDEVSPLLDADDLKELQVYPELRQLFETQIIGPKNGKGN
VHANNSVKYIKMIFLDVNNEKCRVDSILPPEKL*
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mRNA from alignment at P-littoralis_Contig1544:904..2515-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1544.2.1 ID=mRNA_P-littoralis_Contig1544.2.1|Name=mRNA_P-littoralis_Contig1544.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1612bp|location=Sequence derived from alignment at P-littoralis_Contig1544:904..2515- (Pylaiella littoralis U1_48)
ATGCTATTTAATTACAATACATTATCGCTCACCTCGAGCAACTTCTTATT
TTCTTCTTCGGTGCATTCATTTAATGCTTTAAGATCTCTAGGAACACGGA
CCAAAAGGCCAAAATTCCAGATAGATCCATGGATATTGGACATGTTTAAA
AATGAGGAAGTCATGACCCCCGTGACCCCCACACAACCTTTGACAAACTA
TTTAATGACCACAAATGGTACGAGTTTGACACTTTTCCCTCGCACGGAAA
GCCTGCTAAGAACTCAAAGAGAGCATCATTTGAATGCCATTATGAAAGCA
ATCTTCACGGCCGGGTATAGTGATGTTGATTTTAATAAGGTTATTCGTGT
TTTAAAAGTAGTAGCTGTTGAGTTTATGACGGAAAATTCGGCCAATGATG
AACCGATTCGATTCATGATTAATTTCGATCATATTTTATCGGAATCGGAG
TTAAAAAAATACCAAGAATTTGATTATTCGGACCAAGATGAAGTATCGCC
CTTACTTGATGCCGATGATTTAAAAGAACTCCAAGTCTACCCGGAGTTAC
GTCAATTATTCGAGACTCAAATAATCGGTCCAAAGAATGGCAAAGGAAAT
GTTCATGCCAACAACAGCGTTAAATATATAAAAATGATATTTCTTGACGT
GAATAATGAAAAATGCAGAGTAGATTCGATTCTTCCCCCAGAAAAGCTAT
AAAATGAATTTAGAAACAAAATCATCCCCTTTACAACTAGTTGTTAATAT
TTTGTATTATTCTCTTATTTCGGCTCTTAGTTGCTTGGTTGTTTATGTGA
TATTTTCTGGTTTGAATGAGTTGATGAATTCGTATTATGCAAATCGTTTA
AGTATTCTTGAGATGGAATATAAGGTTAAATCCTTTTCGACAGATGTTTT
AAGCAGTGTTCAAAACACTTTTCAGAACACCATTAAGCCCACTCCCGAGA
AACAGGGGTGGATTGCCTGGCTAAAGCCTGTATGGGTCTCACTTGCTACT
TTAAGCGTAAGATATCTTGTGAGTCTTTGTTGCCATATGTTGCCTGGAGC
CCTTTTTAACATGACTCTTCTGGGACCCTGTTTAAAGCTTATTATACATG
GACCGGAAGGCTTTTTCGTAGAACCTTTGACCCCTGGTGAGATTCAAGAG
AGATTTCAATTTTTAAGCGAAGCAGGCCAATCCCTAAATAACAATTGTGT
TGAGAGAAATCAAAATATTACGGCTGCCATGAACCTTATTGGTGTTGCAA
TGGATGATATGAGAGCAAGAATTGGTGCTTTAGAGTCGGGTGGTTCAGTA
GATGCAATAAATCTAAACAGGGCAAGAACTCATGAAGAAAGCATGAATGA
AATAAGTAGAATGCTCGACGGTATTTCAGGGAGTGACGGTGGGGTGTTCA
GAGATGAAGAAAATGACACCACCGGAATTTTCGGTGATTAAATAAAATGG
AAGATTTCTTAGAACTTCTTAACACCATATCTGAGACCCCTACCTCGGGT
AGTGGTCATACTATTATACAACAAAATCTGTTGGATCAGCCTAATGATTT
CAATACTGAACACAATCTTTTGTCAAATCAGGCTGATAATACTGACTTAA
AGGTCTATGTCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1544:904..2515-

>mRNA_P-littoralis_Contig1544.2.1 ID=mRNA_P-littoralis_Contig1544.2.1|Name=mRNA_P-littoralis_Contig1544.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=702bp|location=Sequence derived from alignment at P-littoralis_Contig1544:904..2515- (Pylaiella littoralis U1_48)
ATGCTATTTAATTACAATACATTATCGCTCACCTCGAGCAACTTCTTATT
TTCTTCTTCGGTGCATTCATTTAATGCTTTAAGATCTCTAGGAACACGGA
CCAAAAGGCCAAAATTCCAGATAGATCCATGGATATTGGACATGTTTAAA
AATGAGGAAGTCATGACCCCCGTGACCCCCACACAACCTTTGACAAACTA
TTTAATGACCACAAATGGTACGAGTTTGACACTTTTCCCTCGCACGGAAA
GCCTGCTAAGAACTCAAAGAGAGCATCATTTGAATGCCATTATGAAAGCA
ATCTTCACGGCCGGGTATAGTGATGTTGATTTTAATAAGGTTATTCGTGT
TTTAAAAGTAGTAGCTGTTGAGTTTATGACGGAAAATTCGGCCAATGATG
AACCGATTCGATTCATGATTAATTTCGATCATATTTTATCGGAATCGGAG
TTAAAAAAATACCAAGAATTTGATTATTCGGACCAAGATGAAGTATCGCC
CTTACTTGATGCCGATGATTTAAAAGAACTCCAAGTCTACCCGGAGTTAC
GTCAATTATTCGAGACTCAAATAATCGGTCCAAAGAATGGCAAAGGAAAT
GTTCATGCCAACAACAGCGTTAAATATATAAAAATGATATTTCTTGACGT
GAATAATGAAAAATGCAGAGTAGATTCGATTCTTCCCCCAGAAAAGCTAT
AA
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