mRNA_P-littoralis_Contig154.110.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig154.110.1
Unique NamemRNA_P-littoralis_Contig154.110.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig154.110.1 vs. uniprot
Match: Q8QNA9_ESV1K (EsV-1-178 n=3 Tax=root TaxID=1 RepID=Q8QNA9_ESV1K)

HSP 1 Score: 381 bits (978), Expect = 2.310e-120
Identity = 246/641 (38.38%), Postives = 357/641 (55.69%), Query Frame = 1
Query:    1 DDFDSIAKRTGFYRRLTSLLSNYILARRIEQGLDLPEINKKFYDQVWSSLTQK------DDEWTLLYEEFVAVCGFRTGDFPCDVKTRTKESVTNEMATVAKTMITGMLESKLRSHVRRRL-EDKSNHFLGLDRNQKERATSLVVRHVLDLGFQSHHYLDIHGDYGNVIRPLRLELSGAYSESVNTGKPLYGVINVKPHLFLKVLSYINNHAEIKSNEQILLKKK-----------------ERSSRSV----KVSSLPPVFDLQPAFVYYSDSVIKVEFR--GHDILSL---MAESFRYDNINMKGYTPYGFRTNGVEIHIAFMTEETERPYISGTKDLNKAGYKITAKNVDVLTQKRGLFEMHQSKTDAKR-VRDPARI-NITSVDPGCSSVVSVRKVHLEKCSSPVDIHQDDAGNTWDLLGKEYSKTSGRTSGQTRERRRTMKCLTYRRAIKKFEGVRRKTSSVQSIIAYCRVVANTLKDLYREKNRKNRRVFWIYKSRRTRSTVDKLANPIAFYKEQRKNVVLFGNGFLKAKKGHASCPRKILVGALASRALVGMLDEYRTSKRCPGGCRGDMKDIEENL-MRRCTADLGNGEDNFC----------CDRDRSATINLCRIGYESLVNNSWPEHLAR 1785
            D  + +++ TG +R +  L SNY++ RR+EQGL  PE+ K FYD+ W+++  +       ++++ L +EF+   GF T  FP  V +R +E+VT EM   AK  I   LE+K++  +R RL  D    F  L    + R    +    L+   +     D+   Y   +  +R  L+  YS   +    +  V+  KPHLFL+++S I+N AE  S+    L+++                 ER  R +    K+ ++ PV+ L P F YYS SV+   F   GHD  S+   ++E F    +N KGY P GFR++G ++ + FMT  +++P + GTKDL K+GY+I  K V + TQ+RGLF + Q++ D+++ V D     N+T VDPGC+SVVSVR   LE C     + +      W++ G EYS  SGRT  + RE++R      Y R   +F  V++KT+   S +AYCRV A T K ++ EK ++ R+    + SR  + TVDKLA+ +A     RKN+VLFGNG  +AKKGHAS PRK LV A+ SR  VGMLDE+RTSK CPGGC G+M D++    +R+CT  +  G +N C           DRD SAT+N C  GY  LV  SWP HL R
Sbjct:   61 DRLERMSRYTGSFRYIVGLFSNYVVIRRLEQGLQPPEVKKVFYDRCWAAINTRISGKNTRNDFSDLLDEFIDQTGFDTSLFPPRVPSRLQETVTREMEVSAKNSIVVHLEAKIKGFLRFRLMNDSQLAFQHLPAKDRSRIIISLSNDCLEREMRG----DLDPGYVPHVLQVRDLLAQVYSTEPDVS--VLKVLKKKPHLFLELISMISNVAEEASDNNRDLREETKTRSDEEKVRKAFYMSERIKRGLVDRPKMCTVLPVWKLAPCFPYYSSSVVGSTFHKEGHDFSSVSRFISEHFDLGRVNRKGYKPSGFRSDGYQVQVTFMTLVSKKPLVPGTKDLAKSGYQIAKKVVSLETQERGLFVLSQARKDSRKIVADRLHAYNLTVVDPGCASVVSVRSCPLEFCRCVGSVREKSTD--WEMKGTEYSAKSGRTMLEGREKKRRSNDE-YGRCFPRFSAVKKKTARKSSFVAYCRVAAETFKVMFAEKMKRARKRSRFHSSRLVQKTVDKLASSMAACPSDRKNIVLFGNGSFRAKKGHASAPRKKLVRAICSRVNVGMLDEFRTSKMCPGGCGGEMTDVQGGQRVRQCTT-VSVGVENPCPLFENAVAFRYDRDASATLNFCLAGYCGLVRKSWPTHLLR 691          
BLAST of mRNA_P-littoralis_Contig154.110.1 vs. uniprot
Match: A0A6H5L4M4_9PHAE (Resolvase/invertase-type recombinase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M4_9PHAE)

HSP 1 Score: 330 bits (846), Expect = 3.060e-96
Identity = 223/608 (36.68%), Postives = 331/608 (54.44%), Query Frame = 1
Query:   70 ILARRIEQGLDLPEINKKFYDQVWSSLTQK------DDEWTLLYEEFVAVCGFRTGDFPCDVKTRTKESVTNEMATVAKTMITGMLESKLRSHVRRRL-EDKSNHFLGLDRNQKERATSLVVRHVLDLGFQSHHYLDIHGDYGNVIRPLRLELSGAYSESVNTGKPLYGVINVKPHLFLKVLSYINNHAEIKSNEQILLKKK-----------------ERSSRSV----KVSSLPPVFDLQPAFVYYSDSVIKVEFR--GHDILSL---MAESFRYDNINMKGYTPYGFRTNGVEIHIAFMTEETERPYISGTKDLNKAGYKITAKNVDVLTQKRGLFEMHQSKTDAKR-VRDPARIN-ITSVDPGCSSVVSVRKVHLEKCSSPVDIHQDDAGNTWDLLGKEYSKTSGRTSGQTRERRRTMKCLTYRRAIKKFEGVRRKTSSVQSIIAYCRVVANTLKDLYREKNRKNRRVFWIYKSRRTRSTVDKLANPIAFYKEQRKNVVLFGNGFLKAKKGHASCPRKILVGALASRALVGMLDEYRTSKRCPGGCRGDMKDIEENL-MRRCTADLGNGEDNFC----------CDRDRSATINLCRIGYESLV 1755
            +  +R+ QGL  PE+ K FYD+ W+++  +       ++++ L +E +   GF T  FP  V  R +E+VT E    AK  I   LE+K++  +R RL  D    F  L    + R    +    L+   +     D+   Y   +  +R  L+  Y+   +   P+  ++  K HLF++++S I+N AE  S+    L+++                 ER  R +    K  ++ PV+ L P F +YS SV+   F   GHD  S+   ++E F    +N KGY P GFR++G ++ + FM   +++P++ GT DL K+GY+I  K V + TQ+RGLF + Q++ D+++ V D    N +T VDPGC+SVVSVR   LE C    +  ++     W++ G EYS  SGRT  + RE++R      Y R   +F  V++KT+   S +AYCRV A T K ++ EK ++ R+    + SR  + TVDKLA+ IA     RKN+VLFGNG  +A KGHAS PRK LV A+ SR  VGMLDE+RTSK CPGGC G+M D++    +R+CT  +  G +N C          CDRD SAT+N C  GY  LV
Sbjct:  711 VQVQRVLQGLQPPEVKKVFYDRCWAAINIRISGKNTRNDFSDLLDEIIDQSGFDTSLFPPKVPCRLQETVTREKEVSAKNSIVVHLEAKIKGFLRFRLMNDSQLAFQHLPAKDRSRIIVSLSNDCLEREMRG----DLDPGYVPHVLQVRDPLAQVYATEPDV--PVLKILKKKTHLFVELISMISNVAEEASDNNRALREETKTRSDEEKVRKAFYMSERIKRGLVDRPKTCTVLPVWKLAPCFPHYSSSVVGSIFHKEGHDFSSVSRFISEHFDLRRVNRKGYKPSGFRSDGYQVQVTFMALVSKKPHVPGTTDLAKSGYQIAKKVVSLETQERGLFVLSQARKDSRKIVADRVHANNLTVVDPGCASVVSVRSCPLEFCRCCRERSRESTD--WEMKGTEYSVKSGRTMLEGREKKRRSNDE-YGRCFPRFSAVKKKTARKSSFLAYCRVAAETFKVMFAEKMKRARKRSRFHSSRLVQKTVDKLASNIAACPSDRKNIVLFGNGSFRAMKGHASAPRKKLVRAICSRVNVGMLDEFRTSKMCPGGCGGEMTDVQGGQRVRQCTT-VCVGVENPCPLFENGVAFRCDRDASATLNFCLAGYCGLV 1308          
BLAST of mRNA_P-littoralis_Contig154.110.1 vs. uniprot
Match: A0A6H5JVT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT4_9PHAE)

HSP 1 Score: 318 bits (814), Expect = 2.760e-91
Identity = 211/569 (37.08%), Postives = 313/569 (55.01%), Query Frame = 1
Query:   79 RRIEQGLDLPEINKKFYDQVWSSLTQK------DDEWTLLYEEFVAVCGFRTGDFPCDVKTRTKESVTNEMATVAKTMITGMLESKLRSHVRRRLEDKSN----HFLGLDRNQ-----KERATSLVVRHVLDLGFQSHHYLDIHGDYGNVIRPLRLELSGAYSESVNTGKPLYGVINVKPHLFLKVLSYINNHAEIKSNEQILLKKK-----------------ERSSRSV----KVSSLPPVFDLQPAFVYYSDSVIKVEFR--GHDILSL---MAESFRYDNINMKGYTPYGFRTNGVEIHIAFMTEETERPYISGTKDLNKAGYKITAKNVDVLTQKRGLFEMHQSKTDAKR-VRDPARI-NITSVDPGCSSVVSVRKVHLEKCSSPVDIHQDDAGNTWDLLGKEYSKTSGRTSGQTRERRRTMKCLTYRRAIKKFEGVRRKTSSVQSIIAYCRVVANTLKDLYREKNRKNRRVFWIYKSRRTRSTVDKLANPIAFYKEQRKNVVLFGNGFLKAKKGHASCPRKILVGALASRALVGMLDEYRTSKRCPGGCRGDMKDIEENLMRR 1656
            ++ ++GL  PE+ K FYD+ W+++  +       ++++ L +EF+   GF T  FP  V  R +E+VT EM   AK  I   LE+K++  +R RL + S     HF   DR++             +R  LD G+  H            +  +R  L+  YS   +   P+  ++  KPHLFL+++S I+  AE  S+    L+++                 ER  R +    K+ ++ PV+ L P F YYS SV+   F   GHD  S+   ++E F    +N KGY P GFR++G ++ + FM   +++P++ GT DL K+GY+I  K V + TQ+RGLF + Q++ D+++ V D     N+T VDPGC+SVVSVR   LE C     + +      W++ G EYS  SGRT  + RE++R      Y R   +F  V++KT+   S +AYCRV A T K ++ EK ++ R+    + SR  + TVDKLA+ IA     RKN+VLFGNG  +A KGHAS PRK LV A+ SR  VGMLDE+RTSK CPGGC G+M D++ +   R
Sbjct:  926 KKEKKGLQPPEVKKVFYDRCWAAINIRISGKNTRNDFSDLLDEFIDQSGFDTSLFPPKVPCRLQETVTREMEVSAKNSIVVHLEAKIKGFLRFRLMNDSQLAFQHFPAKDRSRVIVSLSNDCLEREMREDLDPGYVPH------------VLQVRDLLAQVYSTEPDV--PVLKILKKKPHLFLELISMISRVAEEASDNNRALREETKTRSDEEKVRKAFYISERIKRGLVDRPKMCTVLPVWKLAPCFPYYSSSVVGSIFHKEGHDFSSVSRFISEHFDLRRVNRKGYKPSGFRSDGYQVQVTFMALVSKKPHVPGTTDLAKSGYQIAKKVVSLETQERGLFVLSQARKDSRKIVADRVHAYNLTVVDPGCASVVSVRSCPLEFCRCVGSVREKSTD--WEMKGTEYSVKSGRTMLEGREKKRRSNDE-YGRCFPRFSAVKKKTARKSSFLAYCRVAAETFKVMFAEKMKRARKRSRFHSSRLVQKTVDKLASNIAACPSDRKNIVLFGNGSFRAMKGHASAPRKKLVRAICSRVNVGMLDEFRTSKMCPGGCGGEMTDVQGDCKAR 1477          
BLAST of mRNA_P-littoralis_Contig154.110.1 vs. uniprot
Match: A0A6H5KSF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF5_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 4.110e-44
Identity = 106/256 (41.41%), Postives = 147/256 (57.42%), Query Frame = 1
Query: 1006 TDAKRVRDPAR------------INITSVDPGCSSVVSVRKVHLEKCSSPVDIHQDDAGNTWDLLGKEYSKTSGRTSGQTRERRRTMKCLTYRRAIKKFEGVRRKTSSVQSIIAYCRVVANTLKDLYREKNRKNRRVFWIYKSRRTRSTVDKLANPIAFYKEQRKNVVLFGNGFLKAKKGHASCPRKILVGALASRALVGMLDEYRTSKRCPGGCRGDMKDIE---ENLMRRCTADLGNGEDNFCCDRDRSATINL 1728
            ++ KR RDP R             N+T V PGC+SVVSVR   LE C     + +      W++ G EYS  SGRT  + RE++R      Y R   +F  V++KT+   S +AYCRV A T K ++ EK ++ R+    + SR  + TVDKLA+ IA     RKN+VLFGNG  +A KG+AS PRK LV A+ SR  VGMLDE+RTSK CPGGC G+M D++   +++  +C  ++      FC +   S  +N+
Sbjct:  126 SERKRRRDPTRKXRKIVADRVYAYNLTVVGPGCASVVSVRSCPLEFCRCVGSVREKSTD--WEMKGTEYSVKSGRTMLEGREKKRRSNDE-YGRCFPRFSAVKKKTARKSSFLAYCRVAAKTFKVMFAEKMKRARKRSRFHSSRLVQKTVDKLASNIAACPSDRKNIVLFGNGSFRAMKGYASAPRKKLVRAICSRVNVGMLDEFRTSKMCPGGCGGEMTDVQGGIDSVGEQCR-EIVTSVVAFCTEHRESGMVNV 377          
BLAST of mRNA_P-littoralis_Contig154.110.1 vs. uniprot
Match: Q6XLT6_9PHYC (FirrV-1-M1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT6_9PHYC)

HSP 1 Score: 106 bits (265), Expect = 2.390e-20
Identity = 94/329 (28.57%), Postives = 152/329 (46.20%), Query Frame = 1
Query:  838 FRTNGVEIHIAFMTEETERPYISGTKDLNKAGY----KITAKNVDVLTQKRGLFEMHQSKTDAKRVRDPARINITSVDPGCSSVVSVRKVHLE--KCSSPVDIHQDDAGNTWDLLGKEYSK---TSGRTSGQTRERRRTMKCLTYRRAIKKFEGVRRKTSSVQSIIAYCRVVANTLKDLYREKNRKNRRVFWIYKSRRTRSTVDKLANPIAFYKEQRKNVVLFGNGFLKAKKGHASCPRKILVGALASRALVGMLDEYRTSKRCPGGCRGDMKDIEENLMRRCTADLGNGEDNFC----------CDRDRSATINLCRIGYESLVNNSW 1767
            F T+GV+I +  +T E  R   SG+  LN+ GY    +  A    +L + RG++ +  S  +++ +R    + + S DPG + V++V     E  +   PV I +        + G +Y +    S     +T  RR T    +Y  AI +    +++TS + + I YCR        L  E  +K RR     + R T+S + ++A+    +      V+LFG     AKKG AS PRK L+  +A+R +V M++EY TSK+CPG C  D  + +E  +R C        +  C           DRD   + N+   G+  L+   W
Sbjct:  449 FLTDGVQIKLLLVTLEHTRESFSGSSQLNEEGYSKLPRADAPLETLLEKGRGVYNI-SSLVESESIRGD--LVVMSADPGQAKVINVCSATSETWEKKDPVAILKTSTC----VFGDDYRRETLASHSDEYETLRRRGT----SYGIAIDRLRDEKKRTSCLTTFIQYCRSWCANSSALMNETLQKGRRFLRFGRHRATQSILARIADRFMGHVGDICRVMLFGKASFSAKKGRASAPRKRLIREMAARGVVLMVNEYNTSKQCPG-CLEDTVEDKERRIRSCINFKVGSPEESCRLHPLTPVLEMDRDDVGSTNIGMRGFGQLLGQKW 765          
BLAST of mRNA_P-littoralis_Contig154.110.1 vs. uniprot
Match: A0A6H5JA56_9PHAE (DDE_Tnp_1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA56_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 5.820e-20
Identity = 92/328 (28.05%), Postives = 158/328 (48.17%), Query Frame = 1
Query:  838 FRTNGVEIHIAFMTEETERPYISGTKDLNKAGY-KITAKNVDV---LTQKRGLFEMHQSKTDAKRVRDPARINITSVDPGCSSVVSVRKVHLEKCSSPVDIHQDDAG----NTWDLLGKEYSKTSGRTSGQTRERRRTMKCLTYRRAIKKFEGVRRKTSSVQSIIAYCRVVANTLKDLYREKNRKNRRVFWIYKSRRTRSTVDKLANPIAFYKEQRKNVVLFGNGFLKAKKGHASCPRKILVGALASRALVGMLDEYRTSKRCPGGCRGDMKDIEENLMRRC-TADLGNGEDN---------FCCDRDRSATINLCRIGYESLVNNSW 1767
            F T+GV+I +  +T E  R    G+  LN+AGY K+   +V +   L + RG++ +  S  D+  +R+   + + S DPG + V++V        +      + D G    ++  + G +Y + +  +     E  R  K   Y  AI +    +++TS + + I YC+        L  E  ++ R+     + R T+ T+ K+A+    +      V+LFG    +A+KG AS PRK L+  +ASR +V M++EY TSK+CPG C  D  + +E  +R C    +G+ E++         F  DRD   + N+   G+  L+   W
Sbjct:  479 FLTDGVQIKLLLVTLEHGRKAFPGSTQLNEAGYNKLPRADVQLESLLREGRGVYNI-SSLLDSPSIRED--VVVMSADPGQAKVINVSSATARTWA------RQDPGVILNSSTCVFGDDYRRDTLASRSDKYETFRR-KDQPYGVAIDRLRNEKKRTSCLATFIRYCKSWCANGAALLLETLQEARKFLRFDRFRATQKTLAKIADKYMGHVGDPCRVMLFGKASFRAQKGRASAPRKALIREMASRGVVLMVEEYNTSKKCPG-CGEDTVEDKERRIRSCKNFKIGSPEESCRLHPLTPEFEMDRDDVGSTNIGMRGFGKLLGQEW 795          
BLAST of mRNA_P-littoralis_Contig154.110.1 vs. uniprot
Match: UPI0000161E54 (EsV-1-178/222 paralog 2 n=2 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E54)

HSP 1 Score: 103 bits (258), Expect = 1.700e-19
Identity = 93/328 (28.35%), Postives = 156/328 (47.56%), Query Frame = 1
Query:  838 FRTNGVEIHIAFMTEETERPYISGTKDLNKAGY-KITAKNVDV---LTQKRGLFEMHQSKTDAKRVRDPARINITSVDPGCSSVVSVRKVHLEKCSSPVDIHQDDAG----NTWDLLGKEYSKTSGRTSGQTRERRRTMKCLTYRRAIKKFEGVRRKTSSVQSIIAYCRVVANTLKDLYREKNRKNRRVFWIYKSRRTRSTVDKLANPIAFYKEQRKNVVLFGNGFLKAKKGHASCPRKILVGALASRALVGMLDEYRTSKRCPGGCRGDMKDIEENLMRRC-TADLGNGEDN---------FCCDRDRSATINLCRIGYESLVNNSW 1767
            F T+GV+I +   T E  R   SG+ +LN+ GY K+   +V +   L + RG++ +  S   +  +R+   + + S DPG + V++V        +      + D G     +  + G +Y + +  +     E  R  K   Y  AI +    +++TS + + I YCR        L+RE  +  R+     + R T+ T+  +A+    + E    V+LFG    +A+KG AS PRK L+  +ASR +V M++EY TSK CPG C  D  + +E  +R C    +G+ E++         F  DRD   + N+   G+  L+   W
Sbjct:  440 FLTDGVQIKLLLKTLEHGRKAFSGSSELNEKGYNKLPRADVQLESLLGEGRGVYNI-SSLLKSTSIRED--VVVMSADPGQAKVINVSSATARTWA------KQDPGVILKTSTCVFGDDYRRDTLASRSDEYETFRR-KGQPYGVAIDRLGNEKKRTSCLATFIQYCRRWCVNGPVLFRETLQTGRKFMRFDRFRATQKTLALIADKYMGHVEDTCRVMLFGKASFRAQKGRASAPRKALIREMASRGVVLMVNEYNTSKMCPG-CGEDTVEDKERRIRSCKNFKIGSPEESCRLHRLTPEFEMDRDDVGSTNIGMRGFGKLLGQVW 756          
BLAST of mRNA_P-littoralis_Contig154.110.1 vs. uniprot
Match: A0A835Z9P4_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9P4_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.550e-16
Identity = 80/264 (30.30%), Postives = 127/264 (48.11%), Query Frame = 1
Query:  838 FRTNGVEIHIAFMTEETERPYISGTKDLNKAGYKITAKN---VDVLTQKRGLFEMHQSKTDAKR-VRDPARINITSVDPG-CSSVVSVRKVHLEKCSSPVDIHQDDAGNTWDLLGKEYSKTSGRTSGQTRERRRTMKCLTYRRAIKKFEGVRRKTSSVQSIIAYCRVVANTLKDLYREKNRKNRRVFWIYKSRRTRSTVDKLANPI-AFYKEQRKNVVLFGNGFLKAKKGHASCPRKILVGALASRALVGMLDEYRTSKRCPGG 1611
            F T+G +I ++ MT     P   G + L++AGYK+  KN   +DV+ + RG++  H       R V D A +    VDPG C  + ++  +  +   +    H+  A N   +  +E  K SGR     +E     +   Y  A++     R++TS V  ++ YC          + EK RK R+V    + R  +S    +   + + ++   K +++FGNG  KAKKGH S PRK+++ A A    V M DE  +SK CP G
Sbjct:  430 FETDGHQIKLSLMTSHGTNPGPPGLRYLHEAGYKLRTKNEGIMDVVGRGRGVYNDHGIIFGEDRTVLDDAMLG--GVDPGVCKPLCNIYALGADWDPTAALQHRP-AFNYVVVTEEEVKKLSGRKKTAHQEAVARAQQPKYASALRTVWRYRKRTSDVSELVRYCIAWKRVEDGYWAEKLRKVRKVRAFERFRALQSQAQHIKKTVFSGFRGADKRLIVFGNGSFKAKKGHVSVPRKMIIRACACECSVVMGDERGSSKYCPCG 690          
BLAST of mRNA_P-littoralis_Contig154.110.1 vs. uniprot
Match: A0A835Z2Y3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Y3_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.350e-13
Identity = 76/258 (29.46%), Postives = 123/258 (47.67%), Query Frame = 1
Query:  838 FRTNGVEIHIAFMTEETERPYISGTKDLNKAGYKITAKN---VDVLTQKRGLFEMHQSKTDAKR-VRDPARINITSVDPG-CSSVVSVRKVHLEKCSSPVDIHQDDAGNTWDLLGKEYSKTSGRTSGQTRERRRTMKCLTYRRAIKKFEGVRRKTSSVQSIIAYCRVVANTLKDLYREKNRKNRRVFWIYKSRRTRSTVDKLANPI-AFYKEQRKNVVLFGNGFLKAKKGHASCPRKILVGALASRALVGMLDEYRTS 1593
            F T+G +I ++ MT     P   G + L++AGYK+  KN   +DV+ + RG++  H       R V D A +    VDPG C  + ++  +  +   +    H+  A N   +  +E  K SGR     +E     +   Y  A++     R++TS V  ++ YC          + EK RK R+V    + R  +S    +   + + ++   K +++FGNG  KAKKGH S PRK+++ A A    V M DE  +S
Sbjct:  430 FETDGHQIKLSLMTSHGTNPGPPGLRYLHEAGYKLRTKNEGIMDVVGRGRGVYNDHGIIFGEDRTVLDDAMLG--GVDPGVCKPLCNIYALGADWDPTAALQHRP-AFNYVVVTEEEIKKLSGRKKTAHQEAVVRAQQPKYASALRTVWRYRKRTSDVSELVRYCIAWKRVEHGYWAEKLRKVRKVKAFERFRALQSQAQHIKKVVFSGFQGADKRLIVFGNGSFKAKKGHVSVPRKMIIRACACECSVVMGDERGSS 684          
BLAST of mRNA_P-littoralis_Contig154.110.1 vs. uniprot
Match: A0A836CAY1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAY1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.570e-5
Identity = 30/70 (42.86%), Postives = 42/70 (60.00%), Query Frame = 1
Query: 1459 RKNVVLFGNGFLKAKKGHASCPRKILVGALASRALVGMLDEYRTSKRCPG-GCRGDMKDIEENLMRRCTA 1665
            R+ ++ FG    KA+KGHASCPRK ++   A RA+V M  E+ ++ RCPG G R  M    +   R CT+
Sbjct:  297 RQRIIFFGAASFKARKGHASCPRKKVIRVFACRAIVAMTSEWGSTCRCPGCGARTTMG--PDYRTRECTS 364          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig154.110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
Q8QNA9_ESV1K2.310e-12038.38EsV-1-178 n=3 Tax=root TaxID=1 RepID=Q8QNA9_ESV1K[more]
A0A6H5L4M4_9PHAE3.060e-9636.68Resolvase/invertase-type recombinase catalytic dom... [more]
A0A6H5JVT4_9PHAE2.760e-9137.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSF5_9PHAE4.110e-4441.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q6XLT6_9PHYC2.390e-2028.57FirrV-1-M1 n=1 Tax=Feldmannia irregularis virus a ... [more]
A0A6H5JA56_9PHAE5.820e-2028.05DDE_Tnp_1 domain-containing protein n=1 Tax=Ectoca... [more]
UPI0000161E541.700e-1928.35EsV-1-178/222 paralog 2 n=2 Tax=Ectocarpus silicul... [more]
A0A835Z9P4_9STRA2.550e-1630.30Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835Z2Y3_9STRA4.350e-1329.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAY1_9STRA1.570e-542.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig154contigP-littoralis_Contig154:412973..414802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1800
Hectar predicted targeting categoryother localisation
Exons2
Cds size1800
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789738.8628972-CDS-P-littoralis_Contig154:412972..4131021680789738.8628972-CDS-P-littoralis_Contig154:412972..413102Pylaiella littoralis U1_48CDSP-littoralis_Contig154 412973..413102 -
1680789738.8792715-CDS-P-littoralis_Contig154:413132..4148021680789738.8792715-CDS-P-littoralis_Contig154:413132..414802Pylaiella littoralis U1_48CDSP-littoralis_Contig154 413133..414802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig154.110.1prot_P-littoralis_Contig154.110.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig154 412973..414802 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig154.110.1

>prot_P-littoralis_Contig154.110.1 ID=prot_P-littoralis_Contig154.110.1|Name=mRNA_P-littoralis_Contig154.110.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=600bp
DDFDSIAKRTGFYRRLTSLLSNYILARRIEQGLDLPEINKKFYDQVWSSL
TQKDDEWTLLYEEFVAVCGFRTGDFPCDVKTRTKESVTNEMATVAKTMIT
GMLESKLRSHVRRRLEDKSNHFLGLDRNQKERATSLVVRHVLDLGFQSHH
YLDIHGDYGNVIRPLRLELSGAYSESVNTGKPLYGVINVKPHLFLKVLSY
INNHAEIKSNEQILLKKKERSSRSVKVSSLPPVFDLQPAFVYYSDSVIKV
EFRGHDILSLMAESFRYDNINMKGYTPYGFRTNGVEIHIAFMTEETERPY
ISGTKDLNKAGYKITAKNVDVLTQKRGLFEMHQSKTDAKRVRDPARINIT
SVDPGCSSVVSVRKVHLEKCSSPVDIHQDDAGNTWDLLGKEYSKTSGRTS
GQTRERRRTMKCLTYRRAIKKFEGVRRKTSSVQSIIAYCRVVANTLKDLY
REKNRKNRRVFWIYKSRRTRSTVDKLANPIAFYKEQRKNVVLFGNGFLKA
KKGHASCPRKILVGALASRALVGMLDEYRTSKRCPGGCRGDMKDIEENLM
RRCTADLGNGEDNFCCDRDRSATINLCRIGYESLVNNSWPEHLARATGS*
back to top

mRNA from alignment at P-littoralis_Contig154:412973..414802-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig154.110.1 ID=mRNA_P-littoralis_Contig154.110.1|Name=mRNA_P-littoralis_Contig154.110.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1830bp|location=Sequence derived from alignment at P-littoralis_Contig154:412973..414802- (Pylaiella littoralis U1_48)
GACGATTTCGATTCTATCGCTAAAAGAACCGGGTTCTACCGAAGGCTCAC CAGTCTCCTCTCCAACTACATCCTAGCCCGGAGGATCGAACAAGGACTGG ACCTTCCGGAAATAAACAAAAAGTTCTACGACCAGGTTTGGTCTTCCTTG ACCCAGAAAGACGACGAGTGGACTCTTCTGTACGAGGAGTTCGTGGCGGT ATGCGGCTTTAGAACGGGGGACTTTCCCTGTGATGTCAAGACGAGAACGA AGGAGTCCGTGACTAATGAAATGGCCACGGTTGCCAAGACGATGATCACG GGAATGCTAGAGTCCAAGCTGAGGTCTCATGTAAGACGGCGTCTCGAGGA CAAATCAAATCACTTCTTAGGCCTCGACCGAAACCAAAAAGAGAGAGCAA CGAGTCTTGTTGTAAGACACGTCCTGGATCTGGGATTTCAGAGTCATCAT TACCTGGACATCCACGGGGACTACGGGAACGTCATAAGGCCTCTGAGACT CGAGTTGTCAGGGGCGTACTCCGAGAGCGTCAACACGGGTAAACCCCTTT ACGGGGTCATCAACGTCAAACCTCACCTGTTCTTGAAAGTCCTCAGCTAC ATCAACAATCACGCCGAGATAAAGTCGAACGAACAAATACTTCTCAAGAA AAAAGAGAGGAGCAGCAGAAGCGTAAAGGTGTCGTCTCTCCCCCCCGTCT TCGATCTACAACCGGCCTTTGTTTATTATTCTGATTCGGTGATCAAGGTG GAATTTCGGGGGCACGACATCCTGAGTTTAATGGCGGAGAGCTTCAGGTA CGACAACATCAACATGAAGGGGTACACACCGTATGGTTTCAGAACAAACG GCGTCGAGATCCACATAGCTTTTATGACTGAAGAGACGGAGAGACCGTAC ATAAGCGGGACAAAGGATCTGAACAAGGCCGGCTACAAGATCACTGCCAA GAACGTCGATGTTCTGACTCAGAAGAGAGGTCTGTTCGAGATGCATCAGA GCAAAACGGACGCCAAGAGAGTTCGCGATCCTGCACGGATCAACATCACG AGTGTTGACCCCGGGTGTTCTTCGGTTGTCTCTGTGAGAAAAGTACACCT GGAAAAATGCTCCAGTCCAGTCGACATCCACCAAGACGATGCCGGTAATA CCTGGGACTTGTTGGGGAAGGAGTACTCCAAAACGTCGGGGAGGACTTCC GGTCAAACACGAGAAAGGAGAAGGACGATGAAGTGCCTTACTTACAGGAG AGCGATCAAGAAGTTCGAGGGAGTCCGCCGAAAGACCTCTTCTGTACAAT CCATTATCGCGTATTGCAGAGTCGTGGCAAACACGCTGAAAGATCTATAC AGGGAGAAGAACAGAAAGAACCGGAGAGTTTTTTGGATATACAAGAGCAG GAGGACCAGGAGCACGGTCGACAAGCTGGCGAACCCAATCGCCTTCTACA AGGAACAGAGAAAGAACGTCGTCTTGTTTGGGAACGGTTTTCTCAAGGCG AAGAAGGGACACGCGTCGTGTCCCCGAAAGATTCTTGTCGGAGCCCTGGC TTCTCGTGCTTTGGTTGGCATGCTGGATGAATACCGAACATCAAAAAGAT GCCCAGGGGGGTGTCGGGGAGACATGAAGGATATCGAGGAGAATCTTATG AGACGGTGTACAGCCGATCTGTGCGATTCTCATTGTTAGCTTTCATCGAG TGGTAACGGTGAAGATAACTTTTGTTGCGACAGAGATCGGTCGGCTACGA TCAATTTATGTAGAATAGGTTATGAATCGTTGGTAAACAACAGTTGGCCT GAGCACTTGGCTCGGGCAACAGGAAGTTAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig154:412973..414802-

>mRNA_P-littoralis_Contig154.110.1 ID=mRNA_P-littoralis_Contig154.110.1|Name=mRNA_P-littoralis_Contig154.110.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1800bp|location=Sequence derived from alignment at P-littoralis_Contig154:412973..414802- (Pylaiella littoralis U1_48)
GACGATTTCGATTCTATCGCTAAAAGAACCGGGTTCTACCGAAGGCTCAC
CAGTCTCCTCTCCAACTACATCCTAGCCCGGAGGATCGAACAAGGACTGG
ACCTTCCGGAAATAAACAAAAAGTTCTACGACCAGGTTTGGTCTTCCTTG
ACCCAGAAAGACGACGAGTGGACTCTTCTGTACGAGGAGTTCGTGGCGGT
ATGCGGCTTTAGAACGGGGGACTTTCCCTGTGATGTCAAGACGAGAACGA
AGGAGTCCGTGACTAATGAAATGGCCACGGTTGCCAAGACGATGATCACG
GGAATGCTAGAGTCCAAGCTGAGGTCTCATGTAAGACGGCGTCTCGAGGA
CAAATCAAATCACTTCTTAGGCCTCGACCGAAACCAAAAAGAGAGAGCAA
CGAGTCTTGTTGTAAGACACGTCCTGGATCTGGGATTTCAGAGTCATCAT
TACCTGGACATCCACGGGGACTACGGGAACGTCATAAGGCCTCTGAGACT
CGAGTTGTCAGGGGCGTACTCCGAGAGCGTCAACACGGGTAAACCCCTTT
ACGGGGTCATCAACGTCAAACCTCACCTGTTCTTGAAAGTCCTCAGCTAC
ATCAACAATCACGCCGAGATAAAGTCGAACGAACAAATACTTCTCAAGAA
AAAAGAGAGGAGCAGCAGAAGCGTAAAGGTGTCGTCTCTCCCCCCCGTCT
TCGATCTACAACCGGCCTTTGTTTATTATTCTGATTCGGTGATCAAGGTG
GAATTTCGGGGGCACGACATCCTGAGTTTAATGGCGGAGAGCTTCAGGTA
CGACAACATCAACATGAAGGGGTACACACCGTATGGTTTCAGAACAAACG
GCGTCGAGATCCACATAGCTTTTATGACTGAAGAGACGGAGAGACCGTAC
ATAAGCGGGACAAAGGATCTGAACAAGGCCGGCTACAAGATCACTGCCAA
GAACGTCGATGTTCTGACTCAGAAGAGAGGTCTGTTCGAGATGCATCAGA
GCAAAACGGACGCCAAGAGAGTTCGCGATCCTGCACGGATCAACATCACG
AGTGTTGACCCCGGGTGTTCTTCGGTTGTCTCTGTGAGAAAAGTACACCT
GGAAAAATGCTCCAGTCCAGTCGACATCCACCAAGACGATGCCGGTAATA
CCTGGGACTTGTTGGGGAAGGAGTACTCCAAAACGTCGGGGAGGACTTCC
GGTCAAACACGAGAAAGGAGAAGGACGATGAAGTGCCTTACTTACAGGAG
AGCGATCAAGAAGTTCGAGGGAGTCCGCCGAAAGACCTCTTCTGTACAAT
CCATTATCGCGTATTGCAGAGTCGTGGCAAACACGCTGAAAGATCTATAC
AGGGAGAAGAACAGAAAGAACCGGAGAGTTTTTTGGATATACAAGAGCAG
GAGGACCAGGAGCACGGTCGACAAGCTGGCGAACCCAATCGCCTTCTACA
AGGAACAGAGAAAGAACGTCGTCTTGTTTGGGAACGGTTTTCTCAAGGCG
AAGAAGGGACACGCGTCGTGTCCCCGAAAGATTCTTGTCGGAGCCCTGGC
TTCTCGTGCTTTGGTTGGCATGCTGGATGAATACCGAACATCAAAAAGAT
GCCCAGGGGGGTGTCGGGGAGACATGAAGGATATCGAGGAGAATCTTATG
AGACGGTGTACAGCCGATCTTGGTAACGGTGAAGATAACTTTTGTTGCGA
CAGAGATCGGTCGGCTACGATCAATTTATGTAGAATAGGTTATGAATCGT
TGGTAAACAACAGTTGGCCTGAGCACTTGGCTCGGGCAACAGGAAGTTAG
back to top