mRNA_P-littoralis_Contig154.100.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig154.100.1
Unique NamemRNA_P-littoralis_Contig154.100.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig154.100.1 vs. uniprot
Match: Q1ZZT1_9PHYC (DNA adenine methyltranferase n=1 Tax=Feldmannia species virus TaxID=39420 RepID=Q1ZZT1_9PHYC)

HSP 1 Score: 297 bits (760), Expect = 4.450e-94
Identity = 171/370 (46.22%), Postives = 223/370 (60.27%), Query Frame = 3
Query:  114 DTYTVTKAATLVGGWGFKFHSVYQVLDVAKYPWMEKK----KATRKPRAPPITLPHWWATPAADTLTPSRPTSE*LWLAVKGDPSKLFTSVSLA---INRPDLGKKSRSKKLNASDKWATERLSEFLEEIMRHLTPDAKVLNVFASSINPSVDSWGPGIPGGYLSSMKANSGVVGAANKVLRSLKKTQLHELNLKLHKVLNKEDGVVLEKIPTWPPIEAAMSAMAQNPG---YDFRDDDESTKDWVVKLVHTLSQANMADFTKLHSKKKKRKATVDSNP-DRQRHGIASKSVVSKELAEFLGLAEGEIIARTQVISLLNKYIAAQSLKDPVKKNKINLDEKLKALLSPAEDFGVITFFNICRLLKPHFPQ 1190
            D Y V     LV  WGFKFHSV+Q +DV  YPWM  K    K TRKPRAPPI  P WW+TP      P+RPT+E L LA KGDPS  F   + A   +N P+LGKKSR+KK N      ++R  +FLE ++ HLTPDAKVLN+F+S+I+   DSWGP +PGG+L+    N+G+VG  N+ + ++KK+QL  L    H          + K     P+   +S M    G   Y+ RD      +WV  L   L++ N+    KL S +KKRK    S    R RHGIA  SVVSKELAEFLG+   E IART V+S LN+YI    L++P  K ++ LDE L+ LL+P EDFG +T+FN+C+L+  HFP+
Sbjct:   55 DAYAVADTIDLVKAWGFKFHSVFQTMDVGTYPWMAPKNDDNKKTRKPRAPPIADPVWWSTPPELDNAPTRPTTESLLLATKGDPSPHFNKTTTAFSVLNMPELGKKSRAKK-NGDPSMCSDRPLQFLENVLGHLTPDAKVLNLFSSNIHDRADSWGPAVPGGFLTGFGKNTGLVGKINQAMLTMKKSQLKALG---H----------VSKQSKGDPLAKTLSVMESFKGPMVYELRDGAGVINEWVYSLTCILARKNLE---KLDSARKKRKVRQSSGETSRPRHGIACASVVSKELAEFLGIGPDEKIARTTVVSKLNEYITTHGLQNPEHKIEVLLDEPLRKLLNPPEDFGKVTYFNLCKLVGSHFPK 407          
BLAST of mRNA_P-littoralis_Contig154.100.1 vs. uniprot
Match: Q6XM07_9PHYC (FirrV-1-B29 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM07_9PHYC)

HSP 1 Score: 254 bits (649), Expect = 2.490e-77
Identity = 150/375 (40.00%), Postives = 217/375 (57.87%), Query Frame = 3
Query:  114 DTYTVTKAATLVGGWGFKFHSVYQVLDVAKYPWMEKK-------KAT--RKPRAPPITLPHWWATPAADTLTPSRPTSE*LWLAVKGDPSKLFTS---VSLAINRPDLGKKSRSKKLNASDKWATERLSEFLEEIMRHLTPDAKVLNVFASSINPSVDSWGPGIPGGYLSSMKANSGVVGAANKVLRSLKKTQLHELNLKLHKVLNKEDGVVLEKIPT-WPPIEAAMSAMAQNPGYDFRDDDESTKDWVVKLVHTLSQANMADFTKLHSKKKKRKATVDSNPDRQR---HGIASKSVVSKELAEFLGLAEGEIIARTQVISLLNKYIAAQSLKDPVKKNKINLDEKLKALLSPAEDFGVITFFNICRLLKPHFPQ 1190
            D Y V K + L+  WGF FHSV+Q LD+A YPWM KK       K T  RKPRA  I  P WW+     T+ PS PT+E LWLA KGDPS+LF     +   IN P+LGKK  S K  AS+    +R  +FL+ ++ HLT D +VLN++ + ++  VDSWGP IPG ++++   ++G+VG  N  +RS+ K  L ++        +   G   EK+ + +  IE+    M     Y   D     + W  +L+  L++ N++     H KKK++ A    N D  +   HGIA  ++VS ++A+FLG+   E IART V+S LN+YI    L++P  K ++ LDE L  LL+P +DFG IT+FN+C+L+  HFP+
Sbjct:   56 DPYAVAKTSQLIKDWGFTFHSVFQTLDIASYPWMMKKTPASSSSKPTPVRKPRASAIKPPTWWSEAPDSTINPSYPTTEQLWLATKGDPSQLFKKSGPMFSVINIPELGKKPGSSK-RASETMG-DRPLQFLQNVLDHLTDDLRVLNLYTTDLHDQVDSWGPDIPGSFVTAFAKSTGLVGRINDAMRSMTKKDLKQIISANSSSSSSGSGE--EKLQSLYSIIESFNGPMV----YHLLDGKGQVQPWATRLLQVLARKNLSVLPSAHKKKKRKSADSLKNSDGTKKPCHGIARAALVSPQMADFLGIPHDEKIARTTVVSRLNEYIVKNKLQNPEHKVEVMLDEPLLKLLNPPDDFGKITYFNLCKLVGVHFPK 422          
BLAST of mRNA_P-littoralis_Contig154.100.1 vs. uniprot
Match: D8LPF5_ECTSI (EsV-1-129 n=2 Tax=root TaxID=1 RepID=D8LPF5_ECTSI)

HSP 1 Score: 237 bits (604), Expect = 1.270e-69
Identity = 156/422 (36.97%), Postives = 212/422 (50.24%), Query Frame = 3
Query:  114 DTYTVTKAATLVGGWGFKFHSVYQVLDVAKYPWMEKKKAT--------------------------------------------RKPRAPPITLPHWWATPAADTLTPSRPTSE*LWLAVKGDPS---KLFTSVS-----LAINRPDLGKKSRS---KKLNASDKWATERLSEFLEEIMRHLTPDAKVLNVFASSINPSVDSWGPGIPGGYLSSMKANSGVVGAANKVLRSLKKTQLHELNLKLHKVLNKEDGVVLEKIP-------TWPPIEAAMSAMAQNPGYDFRDDD-ESTKDWVVKLVHTLSQANMADFTKLHSKKKKRKATVDSNPDRQRHGIASKSVVSKELAEFLGLAEGEIIARTQVISLLNKYIAAQSLKDPVKKNKINLDEKLKALLSPAEDFGVITFFNICRLLKPHFPQ 1190
            DTY++  A  L    GFKFHSVYQ+ DVA YP   + KA                                             +K R PP++LP +W +      T  RPT+E L L  KG      KL    S       +++PDLGKKSRS   K +N   +W  +R  EFL+  + HL P  K+L VF S++    DS GP +PGG+  +  +N+G+    NKV+RS+KK QL  L   L K+   +D     K+        +W  I  A++ M     YD+   D +   +W+   V + +Q NMADF  L  K+K+RK   DS   R  HGIA   VVSK+L +FLGL EG +++RT  + LLN Y+ A  L++P KK +I  DE L  LL P  DFG IT+F +C LL PHFP+
Sbjct:   56 DTYSIKFATELFKLQGFKFHSVYQICDVATYPPAPEPKAAGEAVPTSVADVMHGSDKDTDGPVDSPAEAAVVDKAIVKTTTKRAKKQRCPPLSLPKYWKSVTHRGST--RPTAEFLLLGHKGGRDVLDKLMNEKSGTLPYQVVHKPDLGKKSRSVPKKNINLDPEWVCDRPEEFLDTAISHLKPSVKILEVFGSTLKRMTDSVGPNVPGGFCPAYGSNAGLANCLNKVMRSMKKVQLQGLCSALSKIAQADDADRATKVKEFRAVDASWTAIVTALTDMKSPVAYDWSSKDADLPAEWLRLAVLSFAQKNMADFGDLRRKRKRRKTNKDS--PRACHGIAKPVVVSKQLTDFLGLEEGHMVSRTHTVKLLNNYVKANGLQNPAKKIQIVPDEALLKLLCPPADFGPITYFKMCSLLGPHFPK 473          
BLAST of mRNA_P-littoralis_Contig154.100.1 vs. uniprot
Match: A0A836CLG3_9STRA (SWIB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLG3_9STRA)

HSP 1 Score: 138 bits (348), Expect = 7.810e-33
Identity = 122/405 (30.12%), Postives = 183/405 (45.19%), Query Frame = 3
Query:  114 DTYTVTKAATLVGGWGFKFHSVYQVLDVAKYP-----------------------------WMEKKKATRKPRAPP------ITLPHWWATPAADTLTPSRPTSE*LWLAVKGDPSKLFTSVSLA----INRPDLGKK-SRSKKLNAS--DKWATERLSE--FLEEIMRHLTPDAKVLNVFASSINPSVDSWGPGIPGGYLSSMKANSGVVGAANKVLRSLKKTQLHELNLKLHKVLNKEDGVVLEKIPTWPPIEAAMSAMAQNPGYD-FRDDDESTKDWVVKLVHTLSQANMADFTKLHSKKKKRKATVDSNPDRQRHGIASKSVVSKELAEFLGLAEGEIIARTQVISLLNKYIAAQSLKDPVKKNKINLDEKLKALLSPAEDFGVITFFNICRLLKPHFPQV 1193
            D+ T      ++  WGF FHSV  +L++A  P                               ++ KA R            I  P WW+  A    T  R  +E LW+ VKG  + L     LA    I+  D  KK S+++K +A+   +W   R SE  F E ++    P AK + +F  SI   VD++GPGIP  ++ ++    G VG     L  L K  +  +  KLHKVL+  D           P E  +     + G D +   D+ST    V ++  ++ + +A +  L  KKK ++A   ++ +R RHGI     VSK+L EF G  +G ++A T V+  +N+YI +Q+ KD        LDEKLK LL   E      +F++  LL PHF +V
Sbjct:   91 DSATAGITTKVMRKWGFTFHSVASILNIAAPPAPLEPVEPAALEPEDEATESGAQTDMEVDGSDRAKAPRXXXXXXXXXIKSIHPPAWWSAVAEGAAT--RACTEQLWVGVKGAGAALCPKAKLAPFQVIDTADFPKKASKARKASATCPPEWYCTRPSELNFFETVLSQYGPSAKAIELFGDSIRNKVDAFGPGIPSMFVPALSGTDGDVGVIKGALEGLGKVTVRSVCAKLHKVLHSSDKSA--------PEEKVVQDFIASIGDDKWAAKDKST----VTIISNVADSFLAAY--LQRKKKAKRARDAASGERPRHGIVCPGPVSKDLLEFFGEPDGTLVASTDVVKRINEYIKSQNPKDG---KFFKLDEKLKKLLGDIEKSN---YFDLHALLSPHFLKV 473          
BLAST of mRNA_P-littoralis_Contig154.100.1 vs. uniprot
Match: A0A835Z0E7_9STRA (SWIB/MDM2 domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0E7_9STRA)

HSP 1 Score: 135 bits (340), Expect = 8.450e-32
Identity = 110/403 (27.30%), Postives = 179/403 (44.42%), Query Frame = 3
Query:  114 DTYTVTKAATLVGGWGFKFHSVYQVLDVAKYPWMEKKKATRKPRAPPITLPH----------------------------------WWATPAADTLTPSRPTSE*LWLAVKGDPSKLFTSVSL----AINRPDLGKKSRSKKLNASD---KWATERLSEFLEEIMRHLTPDAKVLNVFASSINPSVDSWGPGIPGGYLSSMKANSGVVGAANKVLRSLKKTQLHELNLKLHKVLNKEDGVVLEKIPTWPPIEAAMSAMAQNPGYDFRDDDE--STKDWVVKLVHTLSQANMADFTKLHSKKKKRKATVDSNPDRQRHGIASKSVVSKELAEFLGLAEGEIIARTQVISLLNKYIAAQSLKDPVKKNKINLDEKLKALLSPAEDFGVITFFNICRLLKPHFPQV 1193
            D+ T      ++  WGF FHSV  +L++A+ P  E           P+  P                                   WW+ P    LT  R  +E LW+ V+G+ + +   V          PD  KK+   +  +S    +W   R SEF EE++       K + +F  S+  ++D++GPGIP  ++ ++    G VG     L  L K  +  +  KLHK L+  D   L+       ++  ++A+         DDD+  +T    V ++ +++ + +A + +   KKK ++    ++ ++ RHGIA    VSKEL EF G  +G ++ART V+  +N+YI    LKD        LD+KLK LL   E      +F++  LL PHF +V
Sbjct:   87 DSVTAGVTTKIMRKWGFTFHSVASILNIAETP-TEAPAXXXXXXXXPVPAPDANASGTDMDVDSAPTPKAXXXXXXXXIKNIHPPTWWS-PNEGALT--RSCTEQLWVGVRGEGAPVAPKVKANPFQVKTLPDFPKKATKARKGSSSCPPEWYCTRPSEFFEEVLAQFPASVKTIELFGDSLRQNIDAFGPGIPSMFVPALSGTDGDVGTIKAALGGLGKVAVRSVCAKLHKALHSTDKDALQD----KGVQEFITAI---------DDDKWAATDKQTVTVISSVADSFLAAYPQ--RKKKTKRVRDPASGEKARHGIACPGPVSKELLEFFGEPDGTLVARTDVVKRINQYIKTNVLKDG---KFFKLDDKLKKLLGDVEKSS---YFDLHALLSPHFNKV 464          
BLAST of mRNA_P-littoralis_Contig154.100.1 vs. uniprot
Match: A0A835Z5E6_9STRA (SWIB/MDM2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5E6_9STRA)

HSP 1 Score: 125 bits (314), Expect = 5.050e-28
Identity = 109/337 (32.34%), Postives = 152/337 (45.10%), Query Frame = 3
Query:  219 KKKATRKPRAPPITLPHWWATPAADTLTPSRPTSE*LWLAVKGDPSKLFTSVS---LAINRPDLGKKSRSKKLNASDK-----WATERLSEFLEEIMRHLTPDAKVLNVFASSINPSVDSWGPGIPGGYLSSMKANSGVVGAANKVLRSLKKTQLHELNLKLHKVLNKEDGVVLEKIPTWPPIEAAMSAMAQNPGYDFRDDDESTKDWVVKLVHTL---SQANMADFTKLHSKKKKRKATVDSNPD---RQRHGIASKSVVSKELAEFLGLAEGEIIARTQVISLLNKYIAAQSLKDPVKKNKINLDEKLKALLSPAEDFGVITFFNICRLLKPHFP 1187
            K K  R PR   +  P+ W       +   R  +E LW+A +G  + L   V      +N  +L    RS KL          W   R SEF   I++ L+PD   + +F  S+   VDS+GPGIP  ++ ++   SG VG   + L  + K  +  L  KLHK L + +G + E  P    +  A+ A+A+  G        S   WV     TL   S+   + FT+   +KKK             ++RHGIA    VS  L EF G   G  IART V+S +N YI   +L+         LDEKL+ L   AE  G   +FN+  LL PHFP
Sbjct:  169 KPKTPRAPRIKTLHPPNHWMDMEGMLV---RLCTEQLWMATRGAGAPLAAKVKPLPYQVNT-NLEYAKRSCKLRKPSATCPPDWFCTRPSEFFTNILKQLSPDVTAIEMFGDSVQQDVDSFGPGIPQFFVPALGGFSGDVGMVKEALDGMGKVAVRTLCAKLHKALAQLEGALDE--PCVVDLFIAIRAIAKKAG-------GSVDKWVPDNPTTLLVVSKVVDSFFTEYPQRKKKXXXXXXXXXXXXXKERHGIAKPGPVSAALVEFFGEPAGTEIARTDVVSRINAYIRLHNLRAG---KHFKLDEKLQKLFGKAEGEGEFGYFNLHELLAPHFP 489          
BLAST of mRNA_P-littoralis_Contig154.100.1 vs. uniprot
Match: A0A5B8IDZ7_9VIRU (SWIB/MDM2 domain-containing protein n=1 Tax=Mimiviridae sp. ChoanoV1 TaxID=2596887 RepID=A0A5B8IDZ7_9VIRU)

HSP 1 Score: 91.7 bits (226), Expect = 8.990e-18
Identity = 58/142 (40.85%), Postives = 78/142 (54.93%), Query Frame = 3
Query:  798 DESTKDWVVKL--VHTLSQANMADFTKLH---------SKKKKRKATVDSNPDRQRHGIASKSVVSKELAEFLGLAEGEIIARTQVISLLNKYIAAQSLKDPVKKNKINLDEKLKALLSPAEDFGVITFFNICRLLKPHFPQ 1190
            D+  KD V +L    TLSQ+ MAD  KL          S KK+RK  ++S+  R   G A  +++S  L +FLG+  G  +ART+V   L KYI A  L+D   K  IN D  L  LL+  E    +T+FN+ R +KPHFPQ
Sbjct:   64 DDQFKDIVTRLQQFRTLSQSLMADVRKLQKNVTRQVRESSKKQRKRKLNSDVKRPPSGFAKPTLISDSLCQFLGVESGTHMARTEVTKHLTKYIKAHELQDEANKRIINCDSALAGLLN-VEPSDEVTYFNLQRYMKPHFPQ 204          
BLAST of mRNA_P-littoralis_Contig154.100.1 vs. uniprot
Match: A0A2D4ZES9_9BACT (SWIB/MDM2 domain-containing protein n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2D4ZES9_9BACT)

HSP 1 Score: 78.2 bits (191), Expect = 7.160e-14
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 3
Query:  822 VKLVHTLSQANMADFTKLHSKKKKRKATVDSNPDRQR---HGIASKSVVSKELAEFLGLAEGEIIARTQVISLLNKYIAAQSLKDPVKKNKINLDEKLKALLSPAEDFGVITFFNICRLLKPHF 1184
            ++   T  +A++   TKL  K K  +   D      R   +G   K  V+ +L +FLGLAEGE+++R++V   +NKYI  + LK P    ++ LDE+LK LL P  D  V+T+ N+ + L PH+
Sbjct:    6 IQAEITALRADVKSLTKLVRKVKNTQEDPDGTKAAARAANNGFNRKQEVTPKLRDFLGLAEGELVSRSEVTKAINKYITEKGLKHPENGRQLILDERLKDLLQPPADV-VVTYLNLQKYLSPHY 128          
BLAST of mRNA_P-littoralis_Contig154.100.1 vs. uniprot
Match: A0A0P0CR99_9PHYC (SWIB/MDM2 domain-containing protein n=4 Tax=unclassified Prasinovirus TaxID=880158 RepID=A0A0P0CR99_9PHYC)

HSP 1 Score: 78.2 bits (191), Expect = 7.160e-14
Identity = 47/124 (37.90%), Postives = 69/124 (55.65%), Query Frame = 3
Query:  822 VKLVHTLSQANMADFTKLHSKKKKRKATVDSNPDRQR---HGIASKSVVSKELAEFLGLAEGEIIARTQVISLLNKYIAAQSLKDPVKKNKINLDEKLKALLSPAEDFGVITFFNICRLLKPHF 1184
            ++   T  +A++   TKL  K K  +   D      R   +G   K  V+ +L EFLGLAEGE+++R++V   +NKYI  + LK P    ++ LDEKLK LL P  D  V T+ N+ + L PH+
Sbjct:    6 IQAEITALRADVKALTKLVRKVKNTQEDPDGTKAAARAANNGFNRKQEVTPKLREFLGLAEGELVSRSEVTKAINKYITEKGLKHPENGRQLILDEKLKDLLQPPADVTV-TYLNLQKYLSPHY 128          
BLAST of mRNA_P-littoralis_Contig154.100.1 vs. uniprot
Match: A0A6C0CTL4_9ZZZZ (SWIB/MDM2 domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CTL4_9ZZZZ)

HSP 1 Score: 79.0 bits (193), Expect = 3.150e-13
Identity = 45/121 (37.19%), Postives = 68/121 (56.20%), Query Frame = 3
Query:  822 VKLVHTLSQANMADFTKLHSKKKKRKATVDSNPDRQRHGIASKSVVSKELAEFLGLAEGEIIARTQVISLLNKYIAAQSLKDPVKKNKINLDEKLKALLSPAEDFGVITFFNICRLLKPHF 1184
            VK +  + +    DF  +     K+K     +  ++  G A  S++S EL +FLG+ EGE++ RT V  +LNKYI A  L++   K KI  DEKLK +L+  +D  V  +FN+ + LK HF
Sbjct:   95 VKELQAMGKTLEKDFNNVIKVMSKQKNXXXXSESKRASGFAMPSLLSTELYQFLGIKEGELVPRTDVTKMLNKYIVANGLRNEKDKRKILPDEKLKKILNCTDDDDV-HYFNLQQFLKHHF 214          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig154.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q1ZZT1_9PHYC4.450e-9446.22DNA adenine methyltranferase n=1 Tax=Feldmannia sp... [more]
Q6XM07_9PHYC2.490e-7740.00FirrV-1-B29 n=1 Tax=Feldmannia irregularis virus a... [more]
D8LPF5_ECTSI1.270e-6936.97EsV-1-129 n=2 Tax=root TaxID=1 RepID=D8LPF5_ECTSI[more]
A0A836CLG3_9STRA7.810e-3330.12SWIB domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835Z0E7_9STRA8.450e-3227.30SWIB/MDM2 domain-containing protein n=2 Tax=Tribon... [more]
A0A835Z5E6_9STRA5.050e-2832.34SWIB/MDM2 domain-containing protein n=1 Tax=Tribon... [more]
A0A5B8IDZ7_9VIRU8.990e-1840.85SWIB/MDM2 domain-containing protein n=1 Tax=Mimivi... [more]
A0A2D4ZES9_9BACT7.160e-1436.29SWIB/MDM2 domain-containing protein n=1 Tax=Verruc... [more]
A0A0P0CR99_9PHYC7.160e-1437.90SWIB/MDM2 domain-containing protein n=4 Tax=unclas... [more]
A0A6C0CTL4_9ZZZZ3.150e-1337.19SWIB/MDM2 domain-containing protein n=1 Tax=viral ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig154contigP-littoralis_Contig154:377898..379195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog130081.XP_005709165.1
PFAMsDEK_C,SWIB
Model size1196
Max annot lvl2759|Eukaryota
KEGG koko:K15223,ko:K22381
Hectar predicted targeting categoryother localisation
GOsGO:0000120,GO:0000226,GO:0000278,GO:0000280,GO:0000500,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0005730,GO:0006355,GO:0006356,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045943,GO:0048285,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051225,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070925,GO:0071840,GO:0080090,GO:0090307,GO:0140014,GO:1902680,GO:1902850,GO:1903047,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons2
Evalue2.11e-06
EggNOG OGsCOG5531@1|root,KOG1946@2759|Eukaryota
EC2.3.2.27
Descriptionregulation of transcription by RNA polymerase I
Cds size714
COG categoryB
BRITEko00000,ko01000,ko03021,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789738.7363005-CDS-P-littoralis_Contig154:377897..3786111680789738.7363005-CDS-P-littoralis_Contig154:377897..378611Pylaiella littoralis U1_48CDSP-littoralis_Contig154 377898..378611 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789738.7512472-UTR-P-littoralis_Contig154:378611..3788721680789738.7512472-UTR-P-littoralis_Contig154:378611..378872Pylaiella littoralis U1_48UTRP-littoralis_Contig154 378612..378872 -
1680789738.761915-UTR-P-littoralis_Contig154:378974..3791951680789738.761915-UTR-P-littoralis_Contig154:378974..379195Pylaiella littoralis U1_48UTRP-littoralis_Contig154 378975..379195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig154.100.1prot_P-littoralis_Contig154.100.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig154 377898..378611 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig154.100.1

>prot_P-littoralis_Contig154.100.1 ID=prot_P-littoralis_Contig154.100.1|Name=mRNA_P-littoralis_Contig154.100.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=238bp
MRHLTPDAKVLNVFASSINPSVDSWGPGIPGGYLSSMKANSGVVGAANKV
LRSLKKTQLHELNLKLHKVLNKEDGVVLEKIPTWPPIEAAMSAMAQNPGY
DFRDDDESTKDWVVKLVHTLSQANMADFTKLHSKKKKRKATVDSNPDRQR
HGIASKSVVSKELAEFLGLAEGEIIARTQVISLLNKYIAAQSLKDPVKKN
KINLDEKLKALLSPAEDFGVITFFNICRLLKPHFPQV*
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mRNA from alignment at P-littoralis_Contig154:377898..379195-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig154.100.1 ID=mRNA_P-littoralis_Contig154.100.1|Name=mRNA_P-littoralis_Contig154.100.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1298bp|location=Sequence derived from alignment at P-littoralis_Contig154:377898..379195- (Pylaiella littoralis U1_48)
AAGTACAACGTGCTCTACGTCAACACACCATGGGGTGCCTTGGACGAATC GACGCTGTCTAAGTTCCCGGCCTCCAGCATCACCCCGGAAAATGCAGCCC TCTTCACGTGGTGGACACGTACACTGTCACGAAAGCCGCGACGCTCGTGG GGGGATGGGGATTCAAGTTCCACTCTGTCTACCAAGTCCTGGACGTGGCC AAGTATCCCTGGATGGAAAAGGTCGCTTCAACTGCAAGCGAGGAGGAAGC AGGCCAGGCAAAGCCTGGGCCTACGGAAGGGTTAGACCAAGGGTCGGAAA AGCAAGCGACGAAATAACCGAAGAAAAAGGCTACAAGGAAGCCACGCGCT CCCCCTATCACTCTACCCCACTGGTGGGCCACGCCTGCCGCAGACACGCT CACACCGTCGCGACCCACAAGCGAATAACTCTGGTTGGCAGTGAAAGGCG ACCCATCCAAGCTCTTCACCAGCGTGAGTCTGGCGATCAACCGGCCCGAT CTGGGCAAGAAGAGCCGATCGAAGAAGCTCAACGCGTCCGACAAATGGGC TACAGAGCGTCTCAGCGAGTTTCTGGAGGAGATCATGCGACACCTGACCC CTGATGCTAAGGTGCTCAACGTCTTCGCCTCTTCGATCAACCCTTCTGTG GATTCCTGGGGTCCTGGCATTCCCGGAGGCTACCTGTCGTCGATGAAGGC CAACTCTGGTGTGGTCGGCGCCGCCAATAAGGTTCTACGTTCTCTGAAGA AGACGCAGCTGCACGAACTCAACTTGAAGCTACACAAGGTTCTTAACAAA GAAGACGGCGTGGTCCTAGAGAAAATTCCCACTTGGCCTCCTATCGAAGC AGCAATGTCTGCGATGGCGCAAAACCCGGGCTACGATTTTAGGGACGACG ATGAATCCACCAAGGACTGGGTGGTGAAGCTGGTACACACCTTGTCTCAG GCCAACATGGCCGACTTCACCAAGCTTCACTCCAAGAAGAAGAAGAGGAA GGCCACCGTGGACTCAAACCCCGACCGCCAGCGCCACGGTATCGCAAGCA AGTCGGTAGTGAGCAAAGAGCTAGCTGAGTTCCTGGGTCTGGCGGAAGGA GAGATCATAGCCCGCACGCAGGTGATTTCGCTGCTCAACAAGTACATCGC GGCCCAGAGCCTGAAGGACCCCGTCAAAAAGAACAAGATCAACCTGGACG AGAAGCTTAAGGCGCTTTTATCACCCGCTGAAGACTTTGGAGTTATCACG TTTTTCAACATATGCAGGCTGTTGAAGCCTCATTTCCCCCAAGTCTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig154:377898..379195-

>mRNA_P-littoralis_Contig154.100.1 ID=mRNA_P-littoralis_Contig154.100.1|Name=mRNA_P-littoralis_Contig154.100.1|organism=Pylaiella littoralis U1_48|type=CDS|length=714bp|location=Sequence derived from alignment at P-littoralis_Contig154:377898..379195- (Pylaiella littoralis U1_48)
ATGCGACACCTGACCCCTGATGCTAAGGTGCTCAACGTCTTCGCCTCTTC
GATCAACCCTTCTGTGGATTCCTGGGGTCCTGGCATTCCCGGAGGCTACC
TGTCGTCGATGAAGGCCAACTCTGGTGTGGTCGGCGCCGCCAATAAGGTT
CTACGTTCTCTGAAGAAGACGCAGCTGCACGAACTCAACTTGAAGCTACA
CAAGGTTCTTAACAAAGAAGACGGCGTGGTCCTAGAGAAAATTCCCACTT
GGCCTCCTATCGAAGCAGCAATGTCTGCGATGGCGCAAAACCCGGGCTAC
GATTTTAGGGACGACGATGAATCCACCAAGGACTGGGTGGTGAAGCTGGT
ACACACCTTGTCTCAGGCCAACATGGCCGACTTCACCAAGCTTCACTCCA
AGAAGAAGAAGAGGAAGGCCACCGTGGACTCAAACCCCGACCGCCAGCGC
CACGGTATCGCAAGCAAGTCGGTAGTGAGCAAAGAGCTAGCTGAGTTCCT
GGGTCTGGCGGAAGGAGAGATCATAGCCCGCACGCAGGTGATTTCGCTGC
TCAACAAGTACATCGCGGCCCAGAGCCTGAAGGACCCCGTCAAAAAGAAC
AAGATCAACCTGGACGAGAAGCTTAAGGCGCTTTTATCACCCGCTGAAGA
CTTTGGAGTTATCACGTTTTTCAACATATGCAGGCTGTTGAAGCCTCATT
TCCCCCAAGTCTAA
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